Expression of 1-1-2.2.17.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.129760.725
27DAP/17DAP1.232040.841
39DAP/27DAP1.056560.972
41DAP/39DAP1.2740.58
42DAP/41DAP1.046131
43DAP/42DAP0.855650.708
47DAP/43DAP1.054630.95
52DAP/47DAP0.839460.586
57DAP/52DAP1.058310.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.033450.814
17DAP/reference1.218220.492
27DAP/reference1.171360.322
39DAP/reference0.947660.68
41DAP/reference1.067190.808
42DAP/reference1.08730.587
43DAP/reference0.828840.113
47DAP/reference1.032521
52DAP/reference0.841880.183
57DAP/reference1.068321

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.882020.376
27DAP/17DAP0.983490.919
39DAP/27DAP1.076180.581
41DAP/39DAP1.057490.883
42DAP/41DAP0.998830.876
43DAP/42DAP0.937410.482
47DAP/43DAP0.945120.774
52DAP/47DAP1.056570.789
57DAP/52DAP1.066420.74
57DAP/7DAP1.434891

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.73280.08
17DAP/reference0.863950.167
27DAP/reference1.005191
39DAP/reference0.785710.023
41DAP/reference0.807370.03
42DAP/reference0.851610.058
43DAP/reference0.905180.183
47DAP/reference0.822840.293
52DAP/reference0.813760.028
57DAP/reference0.932830.176

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959430.669
17DAP/reference1.102981
27DAP/reference0.647070.007
39DAP/reference1.070560.603
41DAP/reference0.79633
42DAP/reference0.921240.189
43DAP/reference1.187470.453
47DAP/reference1.245330.965
52DAP/reference0.856230.22
57DAP/reference1.080980.523

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.792540.05
17DAP/reference0.942930.528
27DAP/reference0.878150.069
39DAP/reference0.902330.163
41DAP/reference1.073530.84
42DAP/reference0.975970.671
43DAP/reference0.870430.267
47DAP/reference0.736930.004
52DAP/reference0.854040.36
57DAP/reference1.435430.332

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.1963
26DAP/20DAP1.320230.315
34DAP/26DAP1.177910.819
51DAP/34DAP1.027530.988
52DAP/51DAP1.032440.888
53DAP/52DAP1.160680.594
55DAP/53DAP0.845220.544
57DAP/55DAP1.178740.898
62DAP/57DAP0.885130.681
68DAP/62DAP1.194220.936
68DAP/14DAP1.24380.915

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.728170.079

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.298310.209
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.270441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.028481
12-2/M82N/AN/A
12-4/M820.83433
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.98233
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.06223
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.08755
7-2/M82N/AN/A
9-3-2/M821.30545

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.980691
IL2-6/WTpooled1.068731
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.828730.31
IL12-4/WTpooled0.972591
IL1-4/WTpooled1.133631
WT/WTpooled0.936581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.946730.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.985891
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.829951
DC3000/delta hrp 24h0.941570.629

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB2.3908

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.056961
Var 0h0.483341
Var 12h I row2-row11.213060.406
Var 12h NI row2-row11.137371
Var 36h I row2-row11.008421
Var 36h NI row2-row10.867690.706
Var 60h I row2-row10.886990.832
Var 60h NI row2-row10.846760.756
Time course 0hI-0hNI0.981320.943
Time course 12hI-12hNI1.023060.811
Time course 36hI-36hNI0.936810.171
Time course 60hI-60hNI1.020140.673

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.301120.082

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.376450.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.768970.181