Expression of 1-1-2.2.17.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12976 | 0.725 |
27DAP/17DAP | 1.23204 | 0.841 |
39DAP/27DAP | 1.05656 | 0.972 |
41DAP/39DAP | 1.274 | 0.58 |
42DAP/41DAP | 1.04613 | 1 |
43DAP/42DAP | 0.85565 | 0.708 |
47DAP/43DAP | 1.05463 | 0.95 |
52DAP/47DAP | 0.83946 | 0.586 |
57DAP/52DAP | 1.05831 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03345 | 0.814 |
17DAP/reference | 1.21822 | 0.492 |
27DAP/reference | 1.17136 | 0.322 |
39DAP/reference | 0.94766 | 0.68 |
41DAP/reference | 1.06719 | 0.808 |
42DAP/reference | 1.0873 | 0.587 |
43DAP/reference | 0.82884 | 0.113 |
47DAP/reference | 1.03252 | 1 |
52DAP/reference | 0.84188 | 0.183 |
57DAP/reference | 1.06832 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88202 | 0.376 |
27DAP/17DAP | 0.98349 | 0.919 |
39DAP/27DAP | 1.07618 | 0.581 |
41DAP/39DAP | 1.05749 | 0.883 |
42DAP/41DAP | 0.99883 | 0.876 |
43DAP/42DAP | 0.93741 | 0.482 |
47DAP/43DAP | 0.94512 | 0.774 |
52DAP/47DAP | 1.05657 | 0.789 |
57DAP/52DAP | 1.06642 | 0.74 |
57DAP/7DAP | 1.43489 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7328 | 0.08 |
17DAP/reference | 0.86395 | 0.167 |
27DAP/reference | 1.00519 | 1 |
39DAP/reference | 0.78571 | 0.023 |
41DAP/reference | 0.80737 | 0.03 |
42DAP/reference | 0.85161 | 0.058 |
43DAP/reference | 0.90518 | 0.183 |
47DAP/reference | 0.82284 | 0.293 |
52DAP/reference | 0.81376 | 0.028 |
57DAP/reference | 0.93283 | 0.176 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95943 | 0.669 |
17DAP/reference | 1.10298 | 1 |
27DAP/reference | 0.64707 | 0.007 |
39DAP/reference | 1.07056 | 0.603 |
41DAP/reference | 0.79633 | |
42DAP/reference | 0.92124 | 0.189 |
43DAP/reference | 1.18747 | 0.453 |
47DAP/reference | 1.24533 | 0.965 |
52DAP/reference | 0.85623 | 0.22 |
57DAP/reference | 1.08098 | 0.523 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79254 | 0.05 |
17DAP/reference | 0.94293 | 0.528 |
27DAP/reference | 0.87815 | 0.069 |
39DAP/reference | 0.90233 | 0.163 |
41DAP/reference | 1.07353 | 0.84 |
42DAP/reference | 0.97597 | 0.671 |
43DAP/reference | 0.87043 | 0.267 |
47DAP/reference | 0.73693 | 0.004 |
52DAP/reference | 0.85404 | 0.36 |
57DAP/reference | 1.43543 | 0.332 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1963 | |
26DAP/20DAP | 1.32023 | 0.315 |
34DAP/26DAP | 1.17791 | 0.819 |
51DAP/34DAP | 1.02753 | 0.988 |
52DAP/51DAP | 1.03244 | 0.888 |
53DAP/52DAP | 1.16068 | 0.594 |
55DAP/53DAP | 0.84522 | 0.544 |
57DAP/55DAP | 1.17874 | 0.898 |
62DAP/57DAP | 0.88513 | 0.681 |
68DAP/62DAP | 1.19422 | 0.936 |
68DAP/14DAP | 1.2438 | 0.915 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.72817 | 0.079 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.29831 | 0.209 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.27044 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.02848 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.83433 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.98233 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.06223 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.08755 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.30545 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98069 | 1 |
IL2-6/WTpooled | 1.06873 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.82873 | 0.31 |
IL12-4/WTpooled | 0.97259 | 1 |
IL1-4/WTpooled | 1.13363 | 1 |
WT/WTpooled | 0.93658 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94673 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98589 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.82995 | 1 |
DC3000/delta hrp 24h | 0.94157 | 0.629 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 2.3908 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05696 | 1 |
Var 0h | 0.48334 | 1 |
Var 12h I row2-row1 | 1.21306 | 0.406 |
Var 12h NI row2-row1 | 1.13737 | 1 |
Var 36h I row2-row1 | 1.00842 | 1 |
Var 36h NI row2-row1 | 0.86769 | 0.706 |
Var 60h I row2-row1 | 0.88699 | 0.832 |
Var 60h NI row2-row1 | 0.84676 | 0.756 |
Time course 0hI-0hNI | 0.98132 | 0.943 |
Time course 12hI-12hNI | 1.02306 | 0.811 |
Time course 36hI-36hNI | 0.93681 | 0.171 |
Time course 60hI-60hNI | 1.02014 | 0.673 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.30112 | 0.082 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.37645 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.76897 | 0.181 |
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