Expression of 1-1-2.2.17.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.8809 | 0.05 |
27DAP/17DAP | 2.55672 | 0.066 |
39DAP/27DAP | 2.78477 | 0.064 |
41DAP/39DAP | 1.70964 | 0.288 |
42DAP/41DAP | 3.02232 | 0.029 |
43DAP/42DAP | 3.55402 | 0.334 |
47DAP/43DAP | 0.48845 | 0.05 |
52DAP/47DAP | 0.97408 | 0.843 |
57DAP/52DAP | 1.53936 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08247 | 0.685 |
17DAP/reference | 1.14851 | 0.427 |
27DAP/reference | 1.0848 | 0.612 |
39DAP/reference | 0.92385 | 0.298 |
41DAP/reference | 1.27512 | 0.145 |
42DAP/reference | 1.11407 | 0.398 |
43DAP/reference | 1.04308 | 0.787 |
47DAP/reference | 1.22352 | 0.017 |
52DAP/reference | 1.19748 | 0.43 |
57DAP/reference | 1.2099 | 0.202 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23672 | 0.406 |
27DAP/17DAP | 1.58834 | 0.032 |
39DAP/27DAP | 3.88683 | 0.034 |
41DAP/39DAP | 0.34869 | 0.013 |
42DAP/41DAP | 3.97762 | 0.002 |
43DAP/42DAP | 4.834 | 0.013 |
47DAP/43DAP | 0.648 | 0.013 |
52DAP/47DAP | 2.30075 | 0.048 |
57DAP/52DAP | 1.39337 | 0.421 |
57DAP/7DAP | 6.79325 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.36267 | 0.051 |
17DAP/reference | 0.47759 | 0.011 |
27DAP/reference | 0.54088 | 0.01 |
39DAP/reference | 0.60076 | 0.011 |
41DAP/reference | 0.60664 | 0.019 |
42DAP/reference | 0.91119 | 0.235 |
43DAP/reference | 0.88234 | 0.192 |
47DAP/reference | 0.74199 | 0.128 |
52DAP/reference | 0.45113 | 0.01 |
57DAP/reference | 0.47223 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97587 | 0.639 |
17DAP/reference | 0.72748 | 0.009 |
27DAP/reference | 1.02266 | 0.663 |
39DAP/reference | 1.08207 | 1 |
41DAP/reference | 0.99185 | 0.493 |
42DAP/reference | 1.00992 | 1 |
43DAP/reference | 0.73398 | 0.147 |
47DAP/reference | 0.89737 | 0.277 |
52DAP/reference | 0.92676 | 0.302 |
57DAP/reference | 0.85946 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.36122 | 0.019 |
17DAP/reference | 0.51882 | 0.064 |
27DAP/reference | 0.47418 | 0.022 |
39DAP/reference | 0.69342 | 0.043 |
41DAP/reference | 0.78109 | 0.058 |
42DAP/reference | 1.86286 | 0.014 |
43DAP/reference | 2.18758 | 0.008 |
47DAP/reference | 1.29821 | 0.994 |
52DAP/reference | 1.28333 | 0.592 |
57DAP/reference | 1.14542 | 0.592 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94512 | 1 |
26DAP/20DAP | 0.29995 | |
34DAP/26DAP | 1.66683 | 1 |
51DAP/34DAP | 1.08988 | 0.829 |
52DAP/51DAP | 1.25935 | 0.708 |
53DAP/52DAP | 1.11762 | 0.909 |
55DAP/53DAP | 1.11859 | 0.939 |
57DAP/55DAP | 1.50698 | 0.256 |
62DAP/57DAP | 0.88589 | 0.681 |
68DAP/62DAP | 1.36523 | 0.866 |
68DAP/14DAP | 0.41871 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 50.4298 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.16997 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.16509 | |
Mature Eggplant/Ripe Tomato | 0.16837 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.3174 | |
1-1-2/M82 | 2.07427 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.58331 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.123 | 0.232 |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.52144 | |
4-3-2/M82 | 0.75014 | |
4-3/M82 | 1.05279 | 1 |
5-3/M82 | 0.64503 | 0.395 |
6-2/M82 | 1.95887 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.9129 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.05833 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.23215 | 0.362 |
IL12-4/WTpooled | 0.84426 | 0.71 |
IL1-4/WTpooled | 0.84732 | 0.699 |
WT/WTpooled | 0.9104 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.84537 | 0.139 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.64282 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.43462 | 1 |
DC3000/delta hrp 24h | 2.0501 | 0.03 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02155 | |
Var 0h | 1.24128 | 0.98 |
Var 12h I row2-row1 | 0.92113 | 0.856 |
Var 12h NI row2-row1 | 0.99655 | 1 |
Var 36h I row2-row1 | 1.24612 | 0.601 |
Var 36h NI row2-row1 | 0.63174 | 1 |
Var 60h I row2-row1 | 0.65994 | 0.439 |
Var 60h NI row2-row1 | 0.64855 | 1 |
Time course 0hI-0hNI | 1.23922 | 0.764 |
Time course 12hI-12hNI | 1.1135 | 0.816 |
Time course 36hI-36hNI | 2.32389 | 0.006 |
Time course 60hI-60hNI | 4.05194 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.34102 | 0.109 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.59256 | 0.228 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.0288 | 1 |
Manapal/WT (red) | 0.74617 | 0.424 |
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