Expression of 1-1-2.2.17.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.88090.05
27DAP/17DAP2.556720.066
39DAP/27DAP2.784770.064
41DAP/39DAP1.709640.288
42DAP/41DAP3.022320.029
43DAP/42DAP3.554020.334
47DAP/43DAP0.488450.05
52DAP/47DAP0.974080.843
57DAP/52DAP1.539360.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.082470.685
17DAP/reference1.148510.427
27DAP/reference1.08480.612
39DAP/reference0.923850.298
41DAP/reference1.275120.145
42DAP/reference1.114070.398
43DAP/reference1.043080.787
47DAP/reference1.223520.017
52DAP/reference1.197480.43
57DAP/reference1.20990.202

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.236720.406
27DAP/17DAP1.588340.032
39DAP/27DAP3.886830.034
41DAP/39DAP0.348690.013
42DAP/41DAP3.977620.002
43DAP/42DAP4.8340.013
47DAP/43DAP0.6480.013
52DAP/47DAP2.300750.048
57DAP/52DAP1.393370.421
57DAP/7DAP6.793250.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.362670.051
17DAP/reference0.477590.011
27DAP/reference0.540880.01
39DAP/reference0.600760.011
41DAP/reference0.606640.019
42DAP/reference0.911190.235
43DAP/reference0.882340.192
47DAP/reference0.741990.128
52DAP/reference0.451130.01
57DAP/reference0.472230.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.975870.639
17DAP/reference0.727480.009
27DAP/reference1.022660.663
39DAP/reference1.082071
41DAP/reference0.991850.493
42DAP/reference1.009921
43DAP/reference0.733980.147
47DAP/reference0.897370.277
52DAP/reference0.926760.302
57DAP/reference0.859460.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.361220.019
17DAP/reference0.518820.064
27DAP/reference0.474180.022
39DAP/reference0.693420.043
41DAP/reference0.781090.058
42DAP/reference1.862860.014
43DAP/reference2.187580.008
47DAP/reference1.298210.994
52DAP/reference1.283330.592
57DAP/reference1.145420.592

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.945121
26DAP/20DAP0.29995
34DAP/26DAP1.666831
51DAP/34DAP1.089880.829
52DAP/51DAP1.259350.708
53DAP/52DAP1.117620.909
55DAP/53DAP1.118590.939
57DAP/55DAP1.506980.256
62DAP/57DAP0.885890.681
68DAP/62DAP1.365230.866
68DAP/14DAP0.41871

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker50.42980.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.169970.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.16509
Mature Eggplant/Ripe Tomato0.168370.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.3174
1-1-2/M822.074271
12-2/M82N/AN/A
12-4/M821.583311
1-3/M82N/AN/A
2-1-1/M821.1230.232
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.52144
4-3-2/M820.75014
4-3/M821.052791
5-3/M820.645030.395
6-2/M821.95887
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.9129
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.058331
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.232150.362
IL12-4/WTpooled0.844260.71
IL1-4/WTpooled0.847320.699
WT/WTpooled0.91041

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.845370.139

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.642821
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.434621
DC3000/delta hrp 24h2.05010.03

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02155
Var 0h1.241280.98
Var 12h I row2-row10.921130.856
Var 12h NI row2-row10.996551
Var 36h I row2-row11.246120.601
Var 36h NI row2-row10.631741
Var 60h I row2-row10.659940.439
Var 60h NI row2-row10.648551
Time course 0hI-0hNI1.239220.764
Time course 12hI-12hNI1.11350.816
Time course 36hI-36hNI2.323890.006
Time course 60hI-60hNI4.051940.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.341020.109

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.592560.228

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.02881
Manapal/WT (red)0.746170.424