Expression of 1-1-2.2.17.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.326490.534
27DAP/17DAP0.835990.522
39DAP/27DAP1.454920.201
41DAP/39DAP1.896580.185
42DAP/41DAP1.287270.712
43DAP/42DAP1.820930.123
47DAP/43DAP2.494560.233
52DAP/47DAP1.560020.418
57DAP/52DAP1.103010.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.266270.078
17DAP/reference1.360380.117
27DAP/reference1.254090.211
39DAP/reference1.074250.722
41DAP/reference1.335370.122
42DAP/reference1.33340.003
43DAP/reference1.025590.928
47DAP/reference1.284350.011
52DAP/reference1.136010.229
57DAP/reference1.166590.332

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.097450.687
27DAP/17DAP1.373780.3
39DAP/27DAP2.76310.039
41DAP/39DAP0.28430.013
42DAP/41DAP6.654040.001
43DAP/42DAP4.133050.013
47DAP/43DAP0.949380.757
52DAP/47DAP1.321030.474
57DAP/52DAP1.125030.906
57DAP/7DAP9.228830.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.451780.039
17DAP/reference0.521970.012
27DAP/reference0.706730.012
39DAP/reference1.162640.186
41DAP/reference0.822020.247
42DAP/reference1.074031
43DAP/reference1.006920.48
47DAP/reference1.754690.02
52DAP/reference0.94650.435
57DAP/reference0.414360.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.824680.329
17DAP/reference1.237950.484
27DAP/reference1.234770.471
39DAP/reference1.406690.17
41DAP/reference1.288640.041
42DAP/reference1.527580.009
43DAP/reference1.155570.662
47DAP/reference1.320210.071
52DAP/reference1.315130.079
57DAP/reference1.270350.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.546020.057
17DAP/reference0.930790.381
27DAP/reference0.500810.031
39DAP/reference0.768520.029
41DAP/reference0.747740.077
42DAP/reference2.068510.008
43DAP/reference1.809250.022
47DAP/reference1.130540.48
52DAP/reference1.471140.473
57DAP/reference1.351770.304

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.732380.006
26DAP/20DAP0.651570.205
34DAP/26DAP1.035710.972
51DAP/34DAP5.234930.019
52DAP/51DAP0.676460.151
53DAP/52DAP11.37080.016
55DAP/53DAP1.007150.939
57DAP/55DAP0.803950.249
62DAP/57DAP0.701280.28
68DAP/62DAP1.521150.831
68DAP/14DAP1.031980.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker6.201930.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.1390.014
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.24242
Mature Eggplant/Ripe Tomato0.229910.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.992031
1-1-2/M821.280831
12-2/M821.321420.61
12-4/M820.985461
1-3/M820.821441
2-1-1/M820.829940.465
2-1/M820.984171
2-6/M821.14950.594
3-2/M820.072940.428
4-1-1/M821.018911
4-1/M821.340351
4-3-2/M820.881541
4-3/M820.938251
5-3/M820.890241
6-2/M821.016821
6-3/M820.966581
7-1/M820.99308
7-2/M820.947620.796
9-3-2/M821.35129

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.11792
IL2-6/WTpooled0.924981
IL7-5/WTpooled1.22331
IL7-3/WTpooled1.059281
IL12-4/WTpooled0.907810.71
IL1-4/WTpooled1.077380.426
WT/WTpooled0.969681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.530611

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.009241
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.890981
DC3000/delta hrp 24h0.830380.092

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.46554
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.028451
Var 0h1.01261
Var 12h I row2-row11.34610.272
Var 12h NI row2-row11.028881
Var 36h I row2-row11.118270.298
Var 36h NI row2-row11.06861
Var 60h I row2-row10.639120.287
Var 60h NI row2-row11.060061
Time course 0hI-0hNI1.077370.63
Time course 12hI-12hNI0.935980.352
Time course 36hI-36hNI1.053470.799
Time course 60hI-60hNI2.487110.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.65681

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.138950.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.4890.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.09580.381
Manapal/WT (red)0.861540.315