Expression of 1-1-2.2.18.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87592 | 0.436 |
27DAP/17DAP | 1.39946 | 0.881 |
39DAP/27DAP | 1.081 | 0.83 |
41DAP/39DAP | 1.01729 | 0.922 |
42DAP/41DAP | 1.08054 | 0.899 |
43DAP/42DAP | 1.01686 | 1 |
47DAP/43DAP | 1.63252 | 0.384 |
52DAP/47DAP | 0.94925 | 0.711 |
57DAP/52DAP | 1.43884 | 0.565 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85809 | 0.075 |
17DAP/reference | 0.93704 | 0.474 |
27DAP/reference | 1.00663 | 1 |
39DAP/reference | 0.9681 | 0.663 |
41DAP/reference | 0.82678 | 0.065 |
42DAP/reference | 0.88764 | 0.037 |
43DAP/reference | 0.95656 | 0.555 |
47DAP/reference | 1.05491 | 0.463 |
52DAP/reference | 1.15322 | 0.167 |
57DAP/reference | 1.1159 | 0.405 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97391 | 0.716 |
27DAP/17DAP | 1.34012 | 0.161 |
39DAP/27DAP | 1.07926 | 0.558 |
41DAP/39DAP | 1.05803 | 0.883 |
42DAP/41DAP | 1.03716 | 0.904 |
43DAP/42DAP | 0.82939 | 0.054 |
47DAP/43DAP | 1.17205 | 0.475 |
52DAP/47DAP | 0.85164 | 0.316 |
57DAP/52DAP | 1.15308 | 0.405 |
57DAP/7DAP | 0.70447 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22874 | 0.173 |
17DAP/reference | 0.95445 | 0.295 |
27DAP/reference | 0.8573 | 0.185 |
39DAP/reference | 0.9716 | 0.354 |
41DAP/reference | 0.94637 | 0.357 |
42DAP/reference | 1.06152 | 0.534 |
43DAP/reference | 1.19545 | 0.07 |
47DAP/reference | 1.05911 | 0.732 |
52DAP/reference | 1.18126 | 0.055 |
57DAP/reference | 1.13583 | 0.108 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07173 | 0.612 |
17DAP/reference | 0.71507 | 0.009 |
27DAP/reference | 0.76791 | 0.045 |
39DAP/reference | 0.87091 | 0.129 |
41DAP/reference | 0.83579 | 0.035 |
42DAP/reference | 0.8026 | 0.035 |
43DAP/reference | 0.796 | 0.062 |
47DAP/reference | 0.8015 | 0.016 |
52DAP/reference | 0.63647 | 0.004 |
57DAP/reference | 0.88263 | 0.156 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05098 | 0.723 |
17DAP/reference | 1.00637 | 0.839 |
27DAP/reference | 1.0932 | 0.284 |
39DAP/reference | 1.10048 | 0.377 |
41DAP/reference | 1.0154 | 0.826 |
42DAP/reference | 0.95619 | 0.552 |
43DAP/reference | 0.81288 | 0.256 |
47DAP/reference | 0.86908 | 0.048 |
52DAP/reference | 1.5173 | 0.073 |
57DAP/reference | 1.20601 | 0.291 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04494 | 1 |
26DAP/20DAP | 1.40288 | 0.116 |
34DAP/26DAP | 0.89174 | 0.816 |
51DAP/34DAP | 1.6332 | 0.036 |
52DAP/51DAP | 0.92509 | 1 |
53DAP/52DAP | 1.24743 | 0.517 |
55DAP/53DAP | 0.95874 | 0.775 |
57DAP/55DAP | 1.05263 | 0.915 |
62DAP/57DAP | 0.70207 | 0.088 |
68DAP/62DAP | 1.18761 | 0.616 |
68DAP/14DAP | 0.94308 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.51737 | 0.037 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.7784 | 0.232 |
Mature Green Tomato/Ripe Tomato | 1.08876 | 0.632 |
Immature Eggplant/Mature Eggplant | 1.38963 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.94476 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.29658 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08181 | 1 |
1-1-2/M82 | 1.05972 | 1 |
12-2/M82 | 1.11049 | |
12-4/M82 | 0.73967 | 0.619 |
1-3/M82 | 1.00971 | |
2-1-1/M82 | 0.79768 | 0.683 |
2-1/M82 | 1.04095 | 1 |
2-6/M82 | 0.71621 | |
3-2/M82 | 1.14558 | 0.84 |
4-1-1/M82 | 0.64305 | |
4-1/M82 | 0.89941 | 1 |
4-3-2/M82 | 0.75761 | |
4-3/M82 | 0.66903 | 0.421 |
5-3/M82 | 1.05952 | 1 |
6-2/M82 | 0.58849 | 0.481 |
6-3/M82 | 1.06475 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.79324 | 0.417 |
9-3-2/M82 | 0.91066 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.95841 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.84076 | 0.31 |
IL12-4/WTpooled | 1.21175 | 0.538 |
IL1-4/WTpooled | 1.11882 | 1 |
WT/WTpooled | 1.05371 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17626 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04635 | 0.921 |
DC3000/delta hrp 6h | 0.9896 | 0.95 |
DC3000/delta hrp 12h | 1.05313 | 1 |
DC3000/delta hrp 24h | 0.90103 | 0.236 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.17431 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.23027 | 0.212 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15564 | 0.228 |
Exp 36h | 0.94012 | 0.419 |
Exp 60h | 1.06526 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00043 | 1 |
Var 0h | 0.4805 | 1 |
Var 12h I row2-row1 | 0.86701 | 0.338 |
Var 12h NI row2-row1 | 1.05409 | 0.649 |
Var 36h I row2-row1 | 1.30358 | 0.298 |
Var 36h NI row2-row1 | 1.03842 | 1 |
Var 60h I row2-row1 | 0.71156 | 0.306 |
Var 60h NI row2-row1 | 0.92937 | 1 |
Time course 0hI-0hNI | 0.94476 | 0.631 |
Time course 12hI-12hNI | 0.93026 | 0.451 |
Time course 36hI-36hNI | 1.05688 | 0.453 |
Time course 60hI-60hNI | 1.24495 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04772 | 0.482 |
transgenic ySAMdc/azygous control (breaker) | 1.16594 | 1 |
transgenic ySAMdc/azygous control (red) | 1.08754 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.39132 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.88427 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.95077 | 0.503 |
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