Expression of 1-1-2.2.18.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.875920.436
27DAP/17DAP1.399460.881
39DAP/27DAP1.0810.83
41DAP/39DAP1.017290.922
42DAP/41DAP1.080540.899
43DAP/42DAP1.016861
47DAP/43DAP1.632520.384
52DAP/47DAP0.949250.711
57DAP/52DAP1.438840.565

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.858090.075
17DAP/reference0.937040.474
27DAP/reference1.006631
39DAP/reference0.96810.663
41DAP/reference0.826780.065
42DAP/reference0.887640.037
43DAP/reference0.956560.555
47DAP/reference1.054910.463
52DAP/reference1.153220.167
57DAP/reference1.11590.405

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.973910.716
27DAP/17DAP1.340120.161
39DAP/27DAP1.079260.558
41DAP/39DAP1.058030.883
42DAP/41DAP1.037160.904
43DAP/42DAP0.829390.054
47DAP/43DAP1.172050.475
52DAP/47DAP0.851640.316
57DAP/52DAP1.153080.405
57DAP/7DAP0.704471

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.228740.173
17DAP/reference0.954450.295
27DAP/reference0.85730.185
39DAP/reference0.97160.354
41DAP/reference0.946370.357
42DAP/reference1.061520.534
43DAP/reference1.195450.07
47DAP/reference1.059110.732
52DAP/reference1.181260.055
57DAP/reference1.135830.108

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.071730.612
17DAP/reference0.715070.009
27DAP/reference0.767910.045
39DAP/reference0.870910.129
41DAP/reference0.835790.035
42DAP/reference0.80260.035
43DAP/reference0.7960.062
47DAP/reference0.80150.016
52DAP/reference0.636470.004
57DAP/reference0.882630.156

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.050980.723
17DAP/reference1.006370.839
27DAP/reference1.09320.284
39DAP/reference1.100480.377
41DAP/reference1.01540.826
42DAP/reference0.956190.552
43DAP/reference0.812880.256
47DAP/reference0.869080.048
52DAP/reference1.51730.073
57DAP/reference1.206010.291

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.044941
26DAP/20DAP1.402880.116
34DAP/26DAP0.891740.816
51DAP/34DAP1.63320.036
52DAP/51DAP0.925091
53DAP/52DAP1.247430.517
55DAP/53DAP0.958740.775
57DAP/55DAP1.052630.915
62DAP/57DAP0.702070.088
68DAP/62DAP1.187610.616
68DAP/14DAP0.943081

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.517370.037

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.77840.232
Mature Green Tomato/Ripe Tomato1.088760.632
Immature Eggplant/Mature Eggplant1.389630.05
Ripe Pepper/Ripe Tomato2.944760.256
Mature Eggplant/Ripe Tomato1.296581

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.081811
1-1-2/M821.059721
12-2/M821.11049
12-4/M820.739670.619
1-3/M821.00971
2-1-1/M820.797680.683
2-1/M821.040951
2-6/M820.71621
3-2/M821.145580.84
4-1-1/M820.64305
4-1/M820.899411
4-3-2/M820.75761
4-3/M820.669030.421
5-3/M821.059521
6-2/M820.588490.481
6-3/M821.064751
7-1/M82N/AN/A
7-2/M820.793240.417
9-3-2/M820.91066

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.958411
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.840760.31
IL12-4/WTpooled1.211750.538
IL1-4/WTpooled1.118821
WT/WTpooled1.053711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.176261

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.046350.921
DC3000/delta hrp 6h0.98960.95
DC3000/delta hrp 12h1.053131
DC3000/delta hrp 24h0.901030.236

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.174310.355
DC3000 delta B/DC3000 delta AB1.230270.212

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.155640.228
Exp 36h0.940120.419
Exp 60h1.065261

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000431
Var 0h0.48051
Var 12h I row2-row10.867010.338
Var 12h NI row2-row11.054090.649
Var 36h I row2-row11.303580.298
Var 36h NI row2-row11.038421
Var 60h I row2-row10.711560.306
Var 60h NI row2-row10.929371
Time course 0hI-0hNI0.944760.631
Time course 12hI-12hNI0.930260.451
Time course 36hI-36hNI1.056880.453
Time course 60hI-60hNI1.244950.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.047720.482
transgenic ySAMdc/azygous control (breaker)1.165941
transgenic ySAMdc/azygous control (red)1.087540.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.391320.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.884270.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.950770.503