Expression of 1-1-2.2.18.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92604 | 0.551 |
27DAP/17DAP | 1.27828 | 0.742 |
39DAP/27DAP | 0.91131 | 0.652 |
41DAP/39DAP | 1.365 | 0.422 |
42DAP/41DAP | 1.06417 | 0.938 |
43DAP/42DAP | 0.86514 | 0.684 |
47DAP/43DAP | 1.1058 | 0.442 |
52DAP/47DAP | 1.07506 | 0.976 |
57DAP/52DAP | 0.898 | 0.643 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97238 | 0.422 |
17DAP/reference | 1.04112 | 0.166 |
27DAP/reference | 0.99064 | 0.741 |
39DAP/reference | 1.00928 | 0.654 |
41DAP/reference | 0.95636 | 0.434 |
42DAP/reference | 0.96622 | 0.085 |
43DAP/reference | 1.02484 | 0.866 |
47DAP/reference | 0.92841 | 0.008 |
52DAP/reference | 0.92484 | 0.118 |
57DAP/reference | 0.87115 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98475 | 0.763 |
27DAP/17DAP | 1.00219 | 1 |
39DAP/27DAP | 1.01774 | 0.799 |
41DAP/39DAP | 0.98866 | 0.997 |
42DAP/41DAP | 1.08457 | 0.622 |
43DAP/42DAP | 1.02534 | 0.788 |
47DAP/43DAP | 1.00591 | 1 |
52DAP/47DAP | 1.02304 | 0.956 |
57DAP/52DAP | 1.02199 | 0.933 |
57DAP/7DAP | 1.12441 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87854 | 0.122 |
17DAP/reference | 0.8532 | 0.014 |
27DAP/reference | 0.86171 | 0.012 |
39DAP/reference | 0.94456 | 0.049 |
41DAP/reference | 0.93552 | 0.146 |
42DAP/reference | 0.95742 | 0.222 |
43DAP/reference | 0.89251 | 0.015 |
47DAP/reference | 0.93323 | 0.222 |
52DAP/reference | 0.93888 | 0.03 |
57DAP/reference | 0.91812 | 0.097 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04046 | 0.55 |
17DAP/reference | 0.96144 | 0.422 |
27DAP/reference | 0.8757 | 0.16 |
39DAP/reference | 0.85239 | 0.095 |
41DAP/reference | 0.82424 | 0.038 |
42DAP/reference | 0.87683 | 0.017 |
43DAP/reference | 0.93673 | 0.43 |
47DAP/reference | 0.91786 | 0.051 |
52DAP/reference | 0.9741 | 0.38 |
57DAP/reference | 1.14274 | 0.244 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88391 | 0.057 |
17DAP/reference | 1.00805 | 1 |
27DAP/reference | 0.88366 | 0.102 |
39DAP/reference | 0.93132 | 0.163 |
41DAP/reference | 0.96546 | 0.512 |
42DAP/reference | 0.85755 | 0.22 |
43DAP/reference | 0.78926 | 0.081 |
47DAP/reference | 0.97957 | 0.525 |
52DAP/reference | 0.84765 | 0.25 |
57DAP/reference | 0.53746 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05941 | 0.85 |
26DAP/20DAP | 0.87952 | 0.512 |
34DAP/26DAP | 0.89972 | 0.61 |
51DAP/34DAP | 0.97617 | 0.807 |
52DAP/51DAP | 1.02728 | 0.783 |
53DAP/52DAP | 1.03518 | 0.797 |
55DAP/53DAP | 1.01531 | 1 |
57DAP/55DAP | 0.98826 | 0.902 |
62DAP/57DAP | 1.00006 | 1 |
68DAP/62DAP | 0.97275 | 0.834 |
68DAP/14DAP | 0.96122 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.8686 | 0.253 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.81136 | 0.317 |
Immature Eggplant/Mature Eggplant | 1.22628 | |
Ripe Pepper/Ripe Tomato | 1.38477 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.88804 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94588 | 0.907 |
1-1-2/M82 | 0.87502 | 0.958 |
12-2/M82 | 1.15881 | |
12-4/M82 | 1.1908 | 1 |
1-3/M82 | 0.94708 | 1 |
2-1-1/M82 | 1.29661 | 0.457 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04161 | 1 |
3-2/M82 | 0.93986 | |
4-1-1/M82 | 0.9777 | 1 |
4-1/M82 | 1.11881 | |
4-3-2/M82 | 1.03418 | |
4-3/M82 | 1.00506 | |
5-3/M82 | 0.98618 | 1 |
6-2/M82 | 0.88852 | 0.481 |
6-3/M82 | 0.97331 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.91994 | 0.599 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03453 | 0.493 |
IL2-6/WTpooled | 0.96524 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.06782 | 1 |
IL12-4/WTpooled | 0.9888 | 1 |
IL1-4/WTpooled | 1.08748 | 1 |
WT/WTpooled | 1.00025 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.35544 | 0.092 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01394 | 1 |
DC3000/delta hrp 6h | 0.83596 | 0.95 |
DC3000/delta hrp 12h | 1.10395 | 1 |
DC3000/delta hrp 24h | 1.0438 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05053 | 0.27 |
DC3000 delta B/DC3000 delta AB | 1.09823 | 0.429 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.78041 | 0.374 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96427 | 1 |
Var 0h | 0.84536 | 0.933 |
Var 12h I row2-row1 | 1.14496 | 0.228 |
Var 12h NI row2-row1 | 0.85063 | 0.466 |
Var 36h I row2-row1 | 0.97234 | 1 |
Var 36h NI row2-row1 | 0.91928 | 0.706 |
Var 60h I row2-row1 | 1.30333 | 0.562 |
Var 60h NI row2-row1 | 1.03013 | 1 |
Time course 0hI-0hNI | 1.06721 | 0.833 |
Time course 12hI-12hNI | 1.03713 | 0.798 |
Time course 36hI-36hNI | 0.94692 | 0.269 |
Time course 60hI-60hNI | 1.17727 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.944 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 0.86869 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.95883 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00107 | 0.958 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.11161 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.11315 | 0.413 |
|
|