Expression of 1-1-2.2.18.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.604740.031
27DAP/17DAP1.06570.973
39DAP/27DAP1.595140.28
41DAP/39DAP0.935080.694
42DAP/41DAP0.758850.774
43DAP/42DAP0.757980.665
47DAP/43DAP0.783480.35
52DAP/47DAP1.735330.256
57DAP/52DAP0.855370.844

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.143340.218
17DAP/reference1.101590.318
27DAP/reference1.066290.375
39DAP/reference0.983530.828
41DAP/reference1.013340.963
42DAP/reference0.984980.398
43DAP/reference0.993470.861
47DAP/reference0.916310.09
52DAP/reference0.97430.504
57DAP/reference0.932470.21

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.964630.679
27DAP/17DAP0.962070.878
39DAP/27DAP0.958680.747
41DAP/39DAP1.559920.026
42DAP/41DAP0.884920.326
43DAP/42DAP0.770230.065
47DAP/43DAP0.942020.781
52DAP/47DAP1.189780.73
57DAP/52DAP1.041141
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.156430.097
17DAP/reference1.207960.007
27DAP/reference1.110960.16
39DAP/reference1.568540.006
41DAP/reference1.386750.05
42DAP/reference1.770050.007
43DAP/reference1.411950.066
47DAP/reference1.258560.145
52DAP/reference1.458610.018
57DAP/reference1.302150.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.849410.204
17DAP/reference1.125220.628
27DAP/reference1.096030.745
39DAP/reference1.39520.132
41DAP/reference1.187140.209
42DAP/reference1.144540.281
43DAP/reference0.93650.385
47DAP/reference1.236210.19
52DAP/reference1.090320.393
57DAP/reference1.662590.398

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.948830.362
17DAP/reference0.963670.537
27DAP/reference1.168260.051
39DAP/reference1.011991
41DAP/reference1.200410.108
42DAP/reference1.231050.347
43DAP/reference1.046020.84
47DAP/reference0.967410.465
52DAP/reference0.975090.763
57DAP/reference1.251090.071

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.62367
26DAP/20DAP0.960861
34DAP/26DAP0.978021
51DAP/34DAP1.362790.854
52DAP/51DAP0.989841
53DAP/52DAP0.772920.455
55DAP/53DAP0.802230.735
57DAP/55DAP0.582990.019
62DAP/57DAP1.264770.902
68DAP/62DAP1.349130.31
68DAP/14DAP1.466950.038

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.163560.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.244930.062
Mature Green Tomato/Ripe Tomato1.095191
Immature Eggplant/Mature Eggplant2.466210.05
Ripe Pepper/Ripe Tomato3.960271
Mature Eggplant/Ripe Tomato1.91480.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.93271
IL2-6/WTpooled0.871671
IL7-5/WTpooled0.785591
IL7-3/WTpooled1.112750.362
IL12-4/WTpooled1.136290.695
IL1-4/WTpooled0.971971
WT/WTpooled1.130240.789

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.178830.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.059690.715
DC3000/delta hrp 6h1.106261
DC3000/delta hrp 12h0.864671
DC3000/delta hrp 24h4.689780.028

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.390980.042
DC3000 delta B/DC3000 delta AB1.24880.177

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.207871
Exp 36h1.031461
Exp 60h1.106270.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.06411
Var 0h0.975021
Var 12h I row2-row11.20280.348
Var 12h NI row2-row11.128281
Var 36h I row2-row10.83261
Var 36h NI row2-row11.019551
Var 60h I row2-row10.796630.306
Var 60h NI row2-row10.7660.301
Time course 0hI-0hNI1.09040.486
Time course 12hI-12hNI1.142120.213
Time course 36hI-36hNI1.376950.009
Time course 60hI-60hNI2.274370.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.846510.314
transgenic ySAMdc/azygous control (breaker)0.819880.173
transgenic ySAMdc/azygous control (red)1.247471

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.977230.5

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.888570.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.880121
Manapal/WT (break)0.876481
Manapal/WT (red)0.960340.863