Expression of 1-1-2.2.18.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.60474 | 0.031 |
27DAP/17DAP | 1.0657 | 0.973 |
39DAP/27DAP | 1.59514 | 0.28 |
41DAP/39DAP | 0.93508 | 0.694 |
42DAP/41DAP | 0.75885 | 0.774 |
43DAP/42DAP | 0.75798 | 0.665 |
47DAP/43DAP | 0.78348 | 0.35 |
52DAP/47DAP | 1.73533 | 0.256 |
57DAP/52DAP | 0.85537 | 0.844 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14334 | 0.218 |
17DAP/reference | 1.10159 | 0.318 |
27DAP/reference | 1.06629 | 0.375 |
39DAP/reference | 0.98353 | 0.828 |
41DAP/reference | 1.01334 | 0.963 |
42DAP/reference | 0.98498 | 0.398 |
43DAP/reference | 0.99347 | 0.861 |
47DAP/reference | 0.91631 | 0.09 |
52DAP/reference | 0.9743 | 0.504 |
57DAP/reference | 0.93247 | 0.21 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96463 | 0.679 |
27DAP/17DAP | 0.96207 | 0.878 |
39DAP/27DAP | 0.95868 | 0.747 |
41DAP/39DAP | 1.55992 | 0.026 |
42DAP/41DAP | 0.88492 | 0.326 |
43DAP/42DAP | 0.77023 | 0.065 |
47DAP/43DAP | 0.94202 | 0.781 |
52DAP/47DAP | 1.18978 | 0.73 |
57DAP/52DAP | 1.04114 | 1 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15643 | 0.097 |
17DAP/reference | 1.20796 | 0.007 |
27DAP/reference | 1.11096 | 0.16 |
39DAP/reference | 1.56854 | 0.006 |
41DAP/reference | 1.38675 | 0.05 |
42DAP/reference | 1.77005 | 0.007 |
43DAP/reference | 1.41195 | 0.066 |
47DAP/reference | 1.25856 | 0.145 |
52DAP/reference | 1.45861 | 0.018 |
57DAP/reference | 1.30215 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84941 | 0.204 |
17DAP/reference | 1.12522 | 0.628 |
27DAP/reference | 1.09603 | 0.745 |
39DAP/reference | 1.3952 | 0.132 |
41DAP/reference | 1.18714 | 0.209 |
42DAP/reference | 1.14454 | 0.281 |
43DAP/reference | 0.9365 | 0.385 |
47DAP/reference | 1.23621 | 0.19 |
52DAP/reference | 1.09032 | 0.393 |
57DAP/reference | 1.66259 | 0.398 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94883 | 0.362 |
17DAP/reference | 0.96367 | 0.537 |
27DAP/reference | 1.16826 | 0.051 |
39DAP/reference | 1.01199 | 1 |
41DAP/reference | 1.20041 | 0.108 |
42DAP/reference | 1.23105 | 0.347 |
43DAP/reference | 1.04602 | 0.84 |
47DAP/reference | 0.96741 | 0.465 |
52DAP/reference | 0.97509 | 0.763 |
57DAP/reference | 1.25109 | 0.071 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.62367 | |
26DAP/20DAP | 0.96086 | 1 |
34DAP/26DAP | 0.97802 | 1 |
51DAP/34DAP | 1.36279 | 0.854 |
52DAP/51DAP | 0.98984 | 1 |
53DAP/52DAP | 0.77292 | 0.455 |
55DAP/53DAP | 0.80223 | 0.735 |
57DAP/55DAP | 0.58299 | 0.019 |
62DAP/57DAP | 1.26477 | 0.902 |
68DAP/62DAP | 1.34913 | 0.31 |
68DAP/14DAP | 1.46695 | 0.038 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.16356 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.24493 | 0.062 |
Mature Green Tomato/Ripe Tomato | 1.09519 | 1 |
Immature Eggplant/Mature Eggplant | 2.46621 | 0.05 |
Ripe Pepper/Ripe Tomato | 3.96027 | 1 |
Mature Eggplant/Ripe Tomato | 1.9148 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9327 | 1 |
IL2-6/WTpooled | 0.87167 | 1 |
IL7-5/WTpooled | 0.78559 | 1 |
IL7-3/WTpooled | 1.11275 | 0.362 |
IL12-4/WTpooled | 1.13629 | 0.695 |
IL1-4/WTpooled | 0.97197 | 1 |
WT/WTpooled | 1.13024 | 0.789 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17883 | 0.193 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05969 | 0.715 |
DC3000/delta hrp 6h | 1.10626 | 1 |
DC3000/delta hrp 12h | 0.86467 | 1 |
DC3000/delta hrp 24h | 4.68978 | 0.028 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.39098 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.2488 | 0.177 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.20787 | 1 |
Exp 36h | 1.03146 | 1 |
Exp 60h | 1.10627 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0641 | 1 |
Var 0h | 0.97502 | 1 |
Var 12h I row2-row1 | 1.2028 | 0.348 |
Var 12h NI row2-row1 | 1.12828 | 1 |
Var 36h I row2-row1 | 0.8326 | 1 |
Var 36h NI row2-row1 | 1.01955 | 1 |
Var 60h I row2-row1 | 0.79663 | 0.306 |
Var 60h NI row2-row1 | 0.766 | 0.301 |
Time course 0hI-0hNI | 1.0904 | 0.486 |
Time course 12hI-12hNI | 1.14212 | 0.213 |
Time course 36hI-36hNI | 1.37695 | 0.009 |
Time course 60hI-60hNI | 2.27437 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.84651 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 0.81988 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.24747 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97723 | 0.5 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.88857 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88012 | 1 |
Manapal/WT (break) | 0.87648 | 1 |
Manapal/WT (red) | 0.96034 | 0.863 |
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