Expression of 1-1-2.2.19.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0691 | 0.798 |
27DAP/17DAP | 1.30761 | 0.744 |
39DAP/27DAP | 0.9712 | 0.749 |
41DAP/39DAP | 1.01028 | 0.89 |
42DAP/41DAP | 1.02213 | 1 |
43DAP/42DAP | 1.0021 | 0.937 |
47DAP/43DAP | 1.11511 | 0.825 |
52DAP/47DAP | 0.88642 | 0.67 |
57DAP/52DAP | 1.16895 | 0.958 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98068 | 0.402 |
17DAP/reference | 1.04827 | 0.104 |
27DAP/reference | 1.00745 | 0.925 |
39DAP/reference | 1.00756 | 0.734 |
41DAP/reference | 0.89144 | 0.154 |
42DAP/reference | 1.03074 | 0.656 |
43DAP/reference | 0.99352 | 0.82 |
47DAP/reference | 1.05376 | 0.353 |
52DAP/reference | 1.01065 | 0.991 |
57DAP/reference | 0.97448 | 0.415 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99031 | 0.782 |
27DAP/17DAP | 0.98456 | 0.878 |
39DAP/27DAP | 1.01758 | 0.718 |
41DAP/39DAP | 1.0041 | 0.909 |
42DAP/41DAP | 1.00535 | 1 |
43DAP/42DAP | 1.0474 | 0.382 |
47DAP/43DAP | 0.99494 | 0.989 |
52DAP/47DAP | 0.99386 | 0.962 |
57DAP/52DAP | 0.94836 | 0.532 |
57DAP/7DAP | 0.99773 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95488 | 0.168 |
17DAP/reference | 0.92313 | 0.039 |
27DAP/reference | 0.95263 | 0.033 |
39DAP/reference | 0.9765 | 0.095 |
41DAP/reference | 0.87326 | 0.022 |
42DAP/reference | 0.78257 | 0.015 |
43DAP/reference | 0.98356 | 0.48 |
47DAP/reference | 0.90471 | 0.293 |
52DAP/reference | 0.91137 | 0.213 |
57DAP/reference | 0.91191 | 0.083 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03521 | 0.724 |
17DAP/reference | 0.96935 | 0.461 |
27DAP/reference | 1.01122 | 1 |
39DAP/reference | 0.97519 | 0.227 |
41DAP/reference | 0.97443 | 0.459 |
42DAP/reference | 0.90164 | 0.046 |
43DAP/reference | 0.9586 | 0.43 |
47DAP/reference | 0.94365 | 0.145 |
52DAP/reference | 1.04599 | 0.343 |
57DAP/reference | 1.05378 | 0.108 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97251 | 0.268 |
17DAP/reference | 1.03392 | 0.522 |
27DAP/reference | 0.98495 | 0.442 |
39DAP/reference | 0.99896 | 0.889 |
41DAP/reference | 0.99684 | 0.826 |
42DAP/reference | 0.96677 | 0.361 |
43DAP/reference | 0.94512 | 0.206 |
47DAP/reference | 0.96341 | 0.396 |
52DAP/reference | 0.95627 | 0.596 |
57DAP/reference | 0.87291 | 0.048 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97861 | 1 |
26DAP/20DAP | 1.07545 | 0.806 |
34DAP/26DAP | 1.04586 | 0.542 |
51DAP/34DAP | 1.0812 | 0.581 |
52DAP/51DAP | 1.04499 | 0.565 |
53DAP/52DAP | 1.03678 | 0.83 |
55DAP/53DAP | 0.98463 | 0.838 |
57DAP/55DAP | 1.05711 | 0.854 |
62DAP/57DAP | 0.84319 | 0.088 |
68DAP/62DAP | 0.94854 | 0.787 |
68DAP/14DAP | 0.97597 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98588 | 0.696 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.74449 | 0.207 |
Mature Green Tomato/Ripe Tomato | 1.21694 | 0.814 |
Immature Eggplant/Mature Eggplant | 1.40687 | 0.051 |
Ripe Pepper/Ripe Tomato | 1.71654 | 1 |
Mature Eggplant/Ripe Tomato | 0.95723 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08906 | 0.877 |
1-1-2/M82 | 1.03901 | 1 |
12-2/M82 | 1.11179 | |
12-4/M82 | 1.05019 | 1 |
1-3/M82 | 1.02976 | 1 |
2-1-1/M82 | 1.02075 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.97106 | 1 |
3-2/M82 | 1.05583 | |
4-1-1/M82 | 1.07421 | 1 |
4-1/M82 | 1.05761 | |
4-3-2/M82 | 0.97897 | |
4-3/M82 | 0.97974 | 1 |
5-3/M82 | 0.9901 | 1 |
6-2/M82 | 1.0116 | 1 |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.01837 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.78411 | 0.247 |
IL2-6/WTpooled | 0.82921 | 0.383 |
IL7-5/WTpooled | 1.10884 | 0.792 |
IL7-3/WTpooled | 0.78514 | 0.298 |
IL12-4/WTpooled | 0.99239 | 1 |
IL1-4/WTpooled | 0.97689 | 1 |
WT/WTpooled | 0.9412 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.73133 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97473 | 1 |
DC3000/delta hrp 6h | 0.97359 | 0.95 |
DC3000/delta hrp 12h | 0.96858 | 1 |
DC3000/delta hrp 24h | 1.09682 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15246 | 0.06 |
DC3000 delta B/DC3000 delta AB | 1.11608 | 0.318 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.78916 | 0.328 |
Exp 36h | 1.0393 | 1 |
Exp 60h | 0.82013 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00299 | 1 |
Var 0h | 0.61122 | 1 |
Var 12h I row2-row1 | 1.09371 | 0.324 |
Var 12h NI row2-row1 | 0.90923 | 0.713 |
Var 36h I row2-row1 | 1.0184 | 1 |
Var 36h NI row2-row1 | 0.89345 | 0.478 |
Var 60h I row2-row1 | 1.13389 | 0.562 |
Var 60h NI row2-row1 | 0.90649 | 0.69 |
Time course 0hI-0hNI | 0.97209 | 0.843 |
Time course 12hI-12hNI | 1.04424 | 0.693 |
Time course 36hI-36hNI | 0.90255 | 0.095 |
Time course 60hI-60hNI | 0.76368 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99294 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.90573 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.02049 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94721 | 0.153 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.5746 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.01972 | 1 |
Manapal/WT (red) | 1.32428 | 0.222 |
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