Expression of 1-1-2.2.19.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.06910.798
27DAP/17DAP1.307610.744
39DAP/27DAP0.97120.749
41DAP/39DAP1.010280.89
42DAP/41DAP1.022131
43DAP/42DAP1.00210.937
47DAP/43DAP1.115110.825
52DAP/47DAP0.886420.67
57DAP/52DAP1.168950.958

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.980680.402
17DAP/reference1.048270.104
27DAP/reference1.007450.925
39DAP/reference1.007560.734
41DAP/reference0.891440.154
42DAP/reference1.030740.656
43DAP/reference0.993520.82
47DAP/reference1.053760.353
52DAP/reference1.010650.991
57DAP/reference0.974480.415

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.990310.782
27DAP/17DAP0.984560.878
39DAP/27DAP1.017580.718
41DAP/39DAP1.00410.909
42DAP/41DAP1.005351
43DAP/42DAP1.04740.382
47DAP/43DAP0.994940.989
52DAP/47DAP0.993860.962
57DAP/52DAP0.948360.532
57DAP/7DAP0.997731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.954880.168
17DAP/reference0.923130.039
27DAP/reference0.952630.033
39DAP/reference0.97650.095
41DAP/reference0.873260.022
42DAP/reference0.782570.015
43DAP/reference0.983560.48
47DAP/reference0.904710.293
52DAP/reference0.911370.213
57DAP/reference0.911910.083

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.035210.724
17DAP/reference0.969350.461
27DAP/reference1.011221
39DAP/reference0.975190.227
41DAP/reference0.974430.459
42DAP/reference0.901640.046
43DAP/reference0.95860.43
47DAP/reference0.943650.145
52DAP/reference1.045990.343
57DAP/reference1.053780.108

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.972510.268
17DAP/reference1.033920.522
27DAP/reference0.984950.442
39DAP/reference0.998960.889
41DAP/reference0.996840.826
42DAP/reference0.966770.361
43DAP/reference0.945120.206
47DAP/reference0.963410.396
52DAP/reference0.956270.596
57DAP/reference0.872910.048

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.978611
26DAP/20DAP1.075450.806
34DAP/26DAP1.045860.542
51DAP/34DAP1.08120.581
52DAP/51DAP1.044990.565
53DAP/52DAP1.036780.83
55DAP/53DAP0.984630.838
57DAP/55DAP1.057110.854
62DAP/57DAP0.843190.088
68DAP/62DAP0.948540.787
68DAP/14DAP0.975971

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.985880.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.744490.207
Mature Green Tomato/Ripe Tomato1.216940.814
Immature Eggplant/Mature Eggplant1.406870.051
Ripe Pepper/Ripe Tomato1.716541
Mature Eggplant/Ripe Tomato0.957231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.089060.877
1-1-2/M821.039011
12-2/M821.11179
12-4/M821.050191
1-3/M821.029761
2-1-1/M821.020751
2-1/M82N/AN/A
2-6/M820.971061
3-2/M821.05583
4-1-1/M821.074211
4-1/M821.05761
4-3-2/M820.97897
4-3/M820.979741
5-3/M820.99011
6-2/M821.01161
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.018371
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.784110.247
IL2-6/WTpooled0.829210.383
IL7-5/WTpooled1.108840.792
IL7-3/WTpooled0.785140.298
IL12-4/WTpooled0.992391
IL1-4/WTpooled0.976891
WT/WTpooled0.94121

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.731330.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.974731
DC3000/delta hrp 6h0.973590.95
DC3000/delta hrp 12h0.968581
DC3000/delta hrp 24h1.096820.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.152460.06
DC3000 delta B/DC3000 delta AB1.116080.318

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.789160.328
Exp 36h1.03931
Exp 60h0.820130.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002991
Var 0h0.611221
Var 12h I row2-row11.093710.324
Var 12h NI row2-row10.909230.713
Var 36h I row2-row11.01841
Var 36h NI row2-row10.893450.478
Var 60h I row2-row11.133890.562
Var 60h NI row2-row10.906490.69
Time course 0hI-0hNI0.972090.843
Time course 12hI-12hNI1.044240.693
Time course 36hI-36hNI0.902550.095
Time course 60hI-60hNI0.763680.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.992940.862
transgenic ySAMdc/azygous control (breaker)0.905730.49
transgenic ySAMdc/azygous control (red)1.020490.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.947210.153

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.57460.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.019721
Manapal/WT (red)1.324280.222