Expression of 1-1-2.2.2.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.847840.364
27DAP/17DAP1.107670.847
39DAP/27DAP1.668550.179
41DAP/39DAP0.840130.449
42DAP/41DAP1.042590.978
43DAP/42DAP2.267520.726
47DAP/43DAP0.971460.835
52DAP/47DAP1.214590.75
57DAP/52DAP1.203830.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.982020.589
17DAP/reference1.117250.412
27DAP/reference1.247130.082
39DAP/reference1.082070.453
41DAP/reference1.024190.714
42DAP/reference0.942430.041
43DAP/reference1.067560.252
47DAP/reference1.149490.042
52DAP/reference1.264030.011
57DAP/reference1.189730.118

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.273330.124
27DAP/17DAP1.082140.9
39DAP/27DAP0.996330.997
41DAP/39DAP1.036880.861
42DAP/41DAP1.055610.836
43DAP/42DAP0.967730.684
47DAP/43DAP1.019360.948
52DAP/47DAP1.092820.742
57DAP/52DAP1.106210.479
57DAP/7DAP0.897181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.272950.144
17DAP/reference1.205820.18
27DAP/reference1.260230.088
39DAP/reference1.304310.133
41DAP/reference1.227550.165
42DAP/reference1.681850.012
43DAP/reference1.1920.344
47DAP/reference1.159540.337
52DAP/reference1.171690.121
57DAP/reference1.138170.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.043610.823
17DAP/reference0.928120.182
27DAP/reference0.981230.554
39DAP/reference1.072850.389
41DAP/reference0.969490.393
42DAP/reference0.872230.089
43DAP/reference0.818710.082
47DAP/reference0.852180.027
52DAP/reference1.021610.882
57DAP/reference0.936610.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.472850.048
17DAP/reference0.997190.792
27DAP/reference1.135390.188
39DAP/reference1.129260.227
41DAP/reference1.193310.188
42DAP/reference1.111170.347
43DAP/reference1.020210.993
47DAP/reference1.078990.133
52DAP/reference1.017150.946
57DAP/reference1.169920.153

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.317510.966
26DAP/20DAP1.466770.121
34DAP/26DAP0.72610.286
51DAP/34DAP1.159720.627
52DAP/51DAP0.806980.079
53DAP/52DAP1.335270.552
55DAP/53DAP1.061730.79
57DAP/55DAP1.152540.793
62DAP/57DAP1.431150.393
68DAP/62DAP1.0690.939
68DAP/14DAP1.073760.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.51480.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.806650.261
Mature Green Tomato/Ripe Tomato1.16520.881
Immature Eggplant/Mature Eggplant0.842520.069
Ripe Pepper/Ripe Tomato1.90951
Mature Eggplant/Ripe Tomato1.768490.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M822.05183
1-1-2/M820.972961
12-2/M820.626720.678
12-4/M820.972721
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M820.67987
2-6/M820.94986
3-2/M820.990661
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.862040.72
5-3/M821.332261
6-2/M82N/AN/A
6-3/M821.117281
7-1/M82N/AN/A
7-2/M820.236750.599
9-3-2/M820.916931

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.739430.247
IL2-6/WTpooled1.056210.659
IL7-5/WTpooled1.363410.792
IL7-3/WTpooled1.070561
IL12-4/WTpooled1.035920.839
IL1-4/WTpooled0.934450.834
WT/WTpooled1.007211

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.90040.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.880291
DC3000/delta hrp 6h1.036720.95
DC3000/delta hrp 12h0.858921
DC3000/delta hrp 24h0.799640.212

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.528260.05
DC3000 delta B/DC3000 delta AB0.911210.369

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.030231
Exp 36h0.912560.589
Exp 60h0.882280.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.943121
Var 0h1.019891
Var 12h I row2-row10.982291
Var 12h NI row2-row11.021041
Var 36h I row2-row11.155450.305
Var 36h NI row2-row10.887420.549
Var 60h I row2-row10.944630.582
Var 60h NI row2-row11.085990.904
Time course 0hI-0hNI0.930270.327
Time course 12hI-12hNI0.944890.519
Time course 36hI-36hNI1.039980.453
Time course 60hI-60hNI1.127350.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.001981
transgenic ySAMdc/azygous control (breaker)1.077891
transgenic ySAMdc/azygous control (red)0.975411

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.056020.287

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.062681

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.265810.096
Manapal/WT (break)1.331060.14
Manapal/WT (red)1.300781