Expression of 1-1-2.2.2.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84784 | 0.364 |
27DAP/17DAP | 1.10767 | 0.847 |
39DAP/27DAP | 1.66855 | 0.179 |
41DAP/39DAP | 0.84013 | 0.449 |
42DAP/41DAP | 1.04259 | 0.978 |
43DAP/42DAP | 2.26752 | 0.726 |
47DAP/43DAP | 0.97146 | 0.835 |
52DAP/47DAP | 1.21459 | 0.75 |
57DAP/52DAP | 1.20383 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98202 | 0.589 |
17DAP/reference | 1.11725 | 0.412 |
27DAP/reference | 1.24713 | 0.082 |
39DAP/reference | 1.08207 | 0.453 |
41DAP/reference | 1.02419 | 0.714 |
42DAP/reference | 0.94243 | 0.041 |
43DAP/reference | 1.06756 | 0.252 |
47DAP/reference | 1.14949 | 0.042 |
52DAP/reference | 1.26403 | 0.011 |
57DAP/reference | 1.18973 | 0.118 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.27333 | 0.124 |
27DAP/17DAP | 1.08214 | 0.9 |
39DAP/27DAP | 0.99633 | 0.997 |
41DAP/39DAP | 1.03688 | 0.861 |
42DAP/41DAP | 1.05561 | 0.836 |
43DAP/42DAP | 0.96773 | 0.684 |
47DAP/43DAP | 1.01936 | 0.948 |
52DAP/47DAP | 1.09282 | 0.742 |
57DAP/52DAP | 1.10621 | 0.479 |
57DAP/7DAP | 0.89718 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27295 | 0.144 |
17DAP/reference | 1.20582 | 0.18 |
27DAP/reference | 1.26023 | 0.088 |
39DAP/reference | 1.30431 | 0.133 |
41DAP/reference | 1.22755 | 0.165 |
42DAP/reference | 1.68185 | 0.012 |
43DAP/reference | 1.192 | 0.344 |
47DAP/reference | 1.15954 | 0.337 |
52DAP/reference | 1.17169 | 0.121 |
57DAP/reference | 1.13817 | 0.25 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04361 | 0.823 |
17DAP/reference | 0.92812 | 0.182 |
27DAP/reference | 0.98123 | 0.554 |
39DAP/reference | 1.07285 | 0.389 |
41DAP/reference | 0.96949 | 0.393 |
42DAP/reference | 0.87223 | 0.089 |
43DAP/reference | 0.81871 | 0.082 |
47DAP/reference | 0.85218 | 0.027 |
52DAP/reference | 1.02161 | 0.882 |
57DAP/reference | 0.93661 | 0.298 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47285 | 0.048 |
17DAP/reference | 0.99719 | 0.792 |
27DAP/reference | 1.13539 | 0.188 |
39DAP/reference | 1.12926 | 0.227 |
41DAP/reference | 1.19331 | 0.188 |
42DAP/reference | 1.11117 | 0.347 |
43DAP/reference | 1.02021 | 0.993 |
47DAP/reference | 1.07899 | 0.133 |
52DAP/reference | 1.01715 | 0.946 |
57DAP/reference | 1.16992 | 0.153 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.31751 | 0.966 |
26DAP/20DAP | 1.46677 | 0.121 |
34DAP/26DAP | 0.7261 | 0.286 |
51DAP/34DAP | 1.15972 | 0.627 |
52DAP/51DAP | 0.80698 | 0.079 |
53DAP/52DAP | 1.33527 | 0.552 |
55DAP/53DAP | 1.06173 | 0.79 |
57DAP/55DAP | 1.15254 | 0.793 |
62DAP/57DAP | 1.43115 | 0.393 |
68DAP/62DAP | 1.069 | 0.939 |
68DAP/14DAP | 1.07376 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.5148 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.80665 | 0.261 |
Mature Green Tomato/Ripe Tomato | 1.1652 | 0.881 |
Immature Eggplant/Mature Eggplant | 0.84252 | 0.069 |
Ripe Pepper/Ripe Tomato | 1.9095 | 1 |
Mature Eggplant/Ripe Tomato | 1.76849 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 2.05183 | |
1-1-2/M82 | 0.97296 | 1 |
12-2/M82 | 0.62672 | 0.678 |
12-4/M82 | 0.97272 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 0.67987 | |
2-6/M82 | 0.94986 | |
3-2/M82 | 0.99066 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.86204 | 0.72 |
5-3/M82 | 1.33226 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.11728 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.23675 | 0.599 |
9-3-2/M82 | 0.91693 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.73943 | 0.247 |
IL2-6/WTpooled | 1.05621 | 0.659 |
IL7-5/WTpooled | 1.36341 | 0.792 |
IL7-3/WTpooled | 1.07056 | 1 |
IL12-4/WTpooled | 1.03592 | 0.839 |
IL1-4/WTpooled | 0.93445 | 0.834 |
WT/WTpooled | 1.00721 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9004 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.88029 | 1 |
DC3000/delta hrp 6h | 1.03672 | 0.95 |
DC3000/delta hrp 12h | 0.85892 | 1 |
DC3000/delta hrp 24h | 0.79964 | 0.212 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.52826 | 0.05 |
DC3000 delta B/DC3000 delta AB | 0.91121 | 0.369 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03023 | 1 |
Exp 36h | 0.91256 | 0.589 |
Exp 60h | 0.88228 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94312 | 1 |
Var 0h | 1.01989 | 1 |
Var 12h I row2-row1 | 0.98229 | 1 |
Var 12h NI row2-row1 | 1.02104 | 1 |
Var 36h I row2-row1 | 1.15545 | 0.305 |
Var 36h NI row2-row1 | 0.88742 | 0.549 |
Var 60h I row2-row1 | 0.94463 | 0.582 |
Var 60h NI row2-row1 | 1.08599 | 0.904 |
Time course 0hI-0hNI | 0.93027 | 0.327 |
Time course 12hI-12hNI | 0.94489 | 0.519 |
Time course 36hI-36hNI | 1.03998 | 0.453 |
Time course 60hI-60hNI | 1.12735 | 0.08 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00198 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.07789 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97541 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05602 | 0.287 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06268 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.26581 | 0.096 |
Manapal/WT (break) | 1.33106 | 0.14 |
Manapal/WT (red) | 1.30078 | 1 |
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