Expression of 1-1-2.2.2.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90048 | 0.551 |
27DAP/17DAP | 0.96975 | 0.941 |
39DAP/27DAP | 1.31072 | 0.553 |
41DAP/39DAP | 0.81575 | 0.281 |
42DAP/41DAP | 1.03171 | 0.994 |
43DAP/42DAP | 1.06263 | 1 |
47DAP/43DAP | 0.85627 | 0.546 |
52DAP/47DAP | 1.10398 | 0.869 |
57DAP/52DAP | 1.37237 | 0.843 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95947 | 0.455 |
17DAP/reference | 0.90278 | 0.12 |
27DAP/reference | 0.98244 | 0.668 |
39DAP/reference | 0.95771 | 0.513 |
41DAP/reference | 0.92672 | 0.085 |
42DAP/reference | 0.93332 | 0.095 |
43DAP/reference | 1.00628 | 1 |
47DAP/reference | 1.01249 | 1 |
52DAP/reference | 1.14046 | 0.195 |
57DAP/reference | 1.35373 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07363 | 0.881 |
27DAP/17DAP | 0.91837 | 0.748 |
39DAP/27DAP | 1.0098 | 1 |
41DAP/39DAP | 0.90873 | 0.53 |
42DAP/41DAP | 1.064 | 0.916 |
43DAP/42DAP | 0.99761 | 0.991 |
47DAP/43DAP | 1.09887 | 0.448 |
52DAP/47DAP | 0.94279 | 0.739 |
57DAP/52DAP | 1.18772 | 0.293 |
57DAP/7DAP | 1.46797 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21846 | 0.664 |
17DAP/reference | 1.51264 | 0.123 |
27DAP/reference | 1.20785 | 0.018 |
39DAP/reference | 1.10717 | 0.57 |
41DAP/reference | 0.95061 | 0.449 |
42DAP/reference | 0.94081 | 0.415 |
43DAP/reference | 0.71925 | 0.095 |
47DAP/reference | 1.11608 | 0.514 |
52DAP/reference | 0.92494 | 0.398 |
57DAP/reference | 1.0834 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82743 | 0.049 |
17DAP/reference | 0.7791 | 0.011 |
27DAP/reference | 0.97706 | 0.537 |
39DAP/reference | 0.96377 | 0.314 |
41DAP/reference | 0.92357 | 0.127 |
42DAP/reference | 1.16747 | 0.17 |
43DAP/reference | 0.98831 | 0.633 |
47DAP/reference | 1.0143 | 1 |
52DAP/reference | 1.0948 | 0.417 |
57DAP/reference | 0.89331 | 0.243 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10438 | 0.984 |
17DAP/reference | 1.17342 | 0.728 |
27DAP/reference | 1.14365 | 0.105 |
39DAP/reference | 0.98189 | 0.643 |
41DAP/reference | 1.09061 | 0.343 |
42DAP/reference | 1.08001 | 0.73 |
43DAP/reference | 1.02325 | 1 |
47DAP/reference | 1.01206 | 1 |
52DAP/reference | 1.00187 | 0.763 |
57DAP/reference | 1.31354 | 0.01 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03829 | 1 |
26DAP/20DAP | 1.61998 | 0.39 |
34DAP/26DAP | 0.87864 | 0.771 |
51DAP/34DAP | 1.12696 | 0.869 |
52DAP/51DAP | 0.79632 | 0.151 |
53DAP/52DAP | 0.96301 | 0.862 |
55DAP/53DAP | 0.69159 | 0.094 |
57DAP/55DAP | 1.06811 | 0.955 |
62DAP/57DAP | 0.74466 | 0.681 |
68DAP/62DAP | 1.41086 | 0.174 |
68DAP/14DAP | 2.08987 | 0.029 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.42557 | 0.03 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.0198 | 0.805 |
Mature Green Tomato/Ripe Tomato | 1.09663 | 0.752 |
Immature Eggplant/Mature Eggplant | 1.37238 | 0.055 |
Ripe Pepper/Ripe Tomato | 0.67901 | 0.224 |
Mature Eggplant/Ripe Tomato | 2.31325 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.8714 | |
1-1-2/M82 | 1.05684 | 1 |
12-2/M82 | 0.97439 | 1 |
12-4/M82 | 0.68935 | 0.358 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.74584 | 0.501 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.05468 | |
4-3-2/M82 | 0.9402 | |
4-3/M82 | 0.79416 | |
5-3/M82 | 1.54989 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.79677 | 0.803 |
7-2/M82 | 0.92926 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.7576 | 0.243 |
IL2-6/WTpooled | 1.06023 | 1 |
IL7-5/WTpooled | 0.63439 | 1 |
IL7-3/WTpooled | 0.99625 | 1 |
IL12-4/WTpooled | 1.09514 | 0.525 |
IL1-4/WTpooled | 0.95589 | 0.699 |
WT/WTpooled | 1.0285 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07471 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11073 | 0.75 |
DC3000/delta hrp 6h | 1.10206 | 1 |
DC3000/delta hrp 12h | 1.0059 | 1 |
DC3000/delta hrp 24h | 0.94153 | 0.725 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.23945 | 0.06 |
DC3000 delta B/DC3000 delta AB | 1.20343 | 0.345 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99439 | 1 |
Exp 36h | 1.19176 | 0.693 |
Exp 60h | 1.22021 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00201 | 1 |
Var 0h | 1.25607 | 0.98 |
Var 12h I row2-row1 | 1.15114 | 0.654 |
Var 12h NI row2-row1 | 1.09345 | 1 |
Var 36h I row2-row1 | 1.00042 | 1 |
Var 36h NI row2-row1 | 0.90074 | 0.645 |
Var 60h I row2-row1 | 0.78751 | 0.285 |
Var 60h NI row2-row1 | 1.02994 | 0.904 |
Time course 0hI-0hNI | 0.91793 | 0.513 |
Time course 12hI-12hNI | 0.97259 | 0.82 |
Time course 36hI-36hNI | 1.2329 | 0.063 |
Time course 60hI-60hNI | 2.23872 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03223 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.01335 | 1 |
transgenic ySAMdc/azygous control (red) | 0.88074 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05848 | 0.086 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87122 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86493 | 0.172 |
Manapal/WT (break) | 1.0553 | 1 |
Manapal/WT (red) | 0.88088 | 0.315 |
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