Expression of 1-1-2.2.2.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.900480.551
27DAP/17DAP0.969750.941
39DAP/27DAP1.310720.553
41DAP/39DAP0.815750.281
42DAP/41DAP1.031710.994
43DAP/42DAP1.062631
47DAP/43DAP0.856270.546
52DAP/47DAP1.103980.869
57DAP/52DAP1.372370.843

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.959470.455
17DAP/reference0.902780.12
27DAP/reference0.982440.668
39DAP/reference0.957710.513
41DAP/reference0.926720.085
42DAP/reference0.933320.095
43DAP/reference1.006281
47DAP/reference1.012491
52DAP/reference1.140460.195
57DAP/reference1.353730.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.073630.881
27DAP/17DAP0.918370.748
39DAP/27DAP1.00981
41DAP/39DAP0.908730.53
42DAP/41DAP1.0640.916
43DAP/42DAP0.997610.991
47DAP/43DAP1.098870.448
52DAP/47DAP0.942790.739
57DAP/52DAP1.187720.293
57DAP/7DAP1.467970.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.218460.664
17DAP/reference1.512640.123
27DAP/reference1.207850.018
39DAP/reference1.107170.57
41DAP/reference0.950610.449
42DAP/reference0.940810.415
43DAP/reference0.719250.095
47DAP/reference1.116080.514
52DAP/reference0.924940.398
57DAP/reference1.08340.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.827430.049
17DAP/reference0.77910.011
27DAP/reference0.977060.537
39DAP/reference0.963770.314
41DAP/reference0.923570.127
42DAP/reference1.167470.17
43DAP/reference0.988310.633
47DAP/reference1.01431
52DAP/reference1.09480.417
57DAP/reference0.893310.243

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.104380.984
17DAP/reference1.173420.728
27DAP/reference1.143650.105
39DAP/reference0.981890.643
41DAP/reference1.090610.343
42DAP/reference1.080010.73
43DAP/reference1.023251
47DAP/reference1.012061
52DAP/reference1.001870.763
57DAP/reference1.313540.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.038291
26DAP/20DAP1.619980.39
34DAP/26DAP0.878640.771
51DAP/34DAP1.126960.869
52DAP/51DAP0.796320.151
53DAP/52DAP0.963010.862
55DAP/53DAP0.691590.094
57DAP/55DAP1.068110.955
62DAP/57DAP0.744660.681
68DAP/62DAP1.410860.174
68DAP/14DAP2.089870.029

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.425570.03

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.01980.805
Mature Green Tomato/Ripe Tomato1.096630.752
Immature Eggplant/Mature Eggplant1.372380.055
Ripe Pepper/Ripe Tomato0.679010.224
Mature Eggplant/Ripe Tomato2.313250.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.8714
1-1-2/M821.056841
12-2/M820.974391
12-4/M820.689350.358
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.745840.501
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.05468
4-3-2/M820.9402
4-3/M820.79416
5-3/M821.549890.572
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.796770.803
7-2/M820.92926
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.75760.243
IL2-6/WTpooled1.060231
IL7-5/WTpooled0.634391
IL7-3/WTpooled0.996251
IL12-4/WTpooled1.095140.525
IL1-4/WTpooled0.955890.699
WT/WTpooled1.02851

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.074710.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.110730.75
DC3000/delta hrp 6h1.102061
DC3000/delta hrp 12h1.00591
DC3000/delta hrp 24h0.941530.725

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.239450.06
DC3000 delta B/DC3000 delta AB1.203430.345

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.994391
Exp 36h1.191760.693
Exp 60h1.220210.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002011
Var 0h1.256070.98
Var 12h I row2-row11.151140.654
Var 12h NI row2-row11.093451
Var 36h I row2-row11.000421
Var 36h NI row2-row10.900740.645
Var 60h I row2-row10.787510.285
Var 60h NI row2-row11.029940.904
Time course 0hI-0hNI0.917930.513
Time course 12hI-12hNI0.972590.82
Time course 36hI-36hNI1.23290.063
Time course 60hI-60hNI2.238720.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.032230.748
transgenic ySAMdc/azygous control (breaker)1.013351
transgenic ySAMdc/azygous control (red)0.880741

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.058480.086

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.871220.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.864930.172
Manapal/WT (break)1.05531
Manapal/WT (red)0.880880.315