Expression of 1-1-2.2.2.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99855 | 0.858 |
27DAP/17DAP | 0.87982 | 0.708 |
39DAP/27DAP | 1.35265 | 0.354 |
41DAP/39DAP | 0.73048 | 0.16 |
42DAP/41DAP | 1.01614 | 1 |
43DAP/42DAP | 0.8779 | 0.583 |
47DAP/43DAP | 0.904 | 0.671 |
52DAP/47DAP | 0.81774 | 0.513 |
57DAP/52DAP | 1.66351 | 0.524 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04058 | 0.928 |
17DAP/reference | 0.89729 | 0.138 |
27DAP/reference | 0.73896 | 0.012 |
39DAP/reference | 1.02427 | 0.871 |
41DAP/reference | 0.85153 | 0.026 |
42DAP/reference | 1.58444 | 0.001 |
43DAP/reference | 1.25588 | 0.04 |
47DAP/reference | 1.14138 | 0.11 |
52DAP/reference | 0.87733 | 0.21 |
57DAP/reference | 1.24743 | 0.063 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23774 | 0.142 |
27DAP/17DAP | 1.06392 | 0.885 |
39DAP/27DAP | 0.86777 | 0.179 |
41DAP/39DAP | 1.14138 | 0.579 |
42DAP/41DAP | 0.90805 | 0.267 |
43DAP/42DAP | 0.76451 | 0.026 |
47DAP/43DAP | 1.13849 | 0.448 |
52DAP/47DAP | 0.73999 | 0.078 |
57DAP/52DAP | 0.8954 | 0.403 |
57DAP/7DAP | 0.76643 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14329 | 0.209 |
17DAP/reference | 1.04011 | 0.822 |
27DAP/reference | 0.84464 | 0.071 |
39DAP/reference | 1.62019 | 0.006 |
41DAP/reference | 1.19545 | 0.029 |
42DAP/reference | 1.25924 | 0.233 |
43DAP/reference | 0.82431 | 0.049 |
47DAP/reference | 0.92284 | 0.383 |
52DAP/reference | 1.08752 | 0.886 |
57DAP/reference | 1.02872 | 0.966 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93161 | 0.386 |
17DAP/reference | 1.08713 | 0.69 |
27DAP/reference | 1.08175 | 0.67 |
39DAP/reference | 1.07106 | 0.502 |
41DAP/reference | 1.24336 | 0.034 |
42DAP/reference | 1.59556 | 0.017 |
43DAP/reference | 1.36584 | 0.235 |
47DAP/reference | 1.82154 | 0.008 |
52DAP/reference | 0.97355 | 0.5 |
57DAP/reference | 1.14605 | 0.494 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22531 | 0.481 |
17DAP/reference | 1.40689 | 0.085 |
27DAP/reference | 2.36869 | 0.075 |
39DAP/reference | 5.77198 | 0.218 |
41DAP/reference | 1.36941 | 0.411 |
42DAP/reference | 0.91439 | 0.552 |
43DAP/reference | 1.04146 | 0.961 |
47DAP/reference | 0.97281 | 0.478 |
52DAP/reference | 0.81313 | 0.376 |
57DAP/reference | 1.20095 | 0.214 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11846 | 0.966 |
26DAP/20DAP | 1.28406 | 0.785 |
34DAP/26DAP | 0.99107 | 0.945 |
51DAP/34DAP | 0.98227 | 0.844 |
52DAP/51DAP | 0.98367 | 1 |
53DAP/52DAP | 0.96074 | 0.824 |
55DAP/53DAP | 1.0409 | 0.991 |
57DAP/55DAP | 1.73616 | 0.11 |
62DAP/57DAP | 0.87418 | 0.681 |
68DAP/62DAP | 1.29625 | 0.398 |
68DAP/14DAP | 2.01633 | 0.039 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.67239 | 0.035 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.47445 | 0.03 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.78572 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.13432 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.26864 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.9958 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.05671 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.01597 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.10538 | 1 |
IL12-4/WTpooled | 0.95754 | 0.581 |
IL1-4/WTpooled | 0.92489 | 1 |
WT/WTpooled | 1.02077 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99439 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98476 | 1 |
DC3000/delta hrp 6h | 1.10233 | 1 |
DC3000/delta hrp 12h | 1.11387 | |
DC3000/delta hrp 24h | 0.75901 | 0.098 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.78082 | 0.059 |
DC3000 delta B/DC3000 delta AB | 0.64609 | 0.025 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91124 | 1 |
Exp 36h | 0.78764 | 0.539 |
Exp 60h | 0.64198 | 0.258 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95087 | 1 |
Var 0h | 1.31054 | 1 |
Var 12h I row2-row1 | 0.81413 | 0.344 |
Var 12h NI row2-row1 | 1.05018 | 1 |
Var 36h I row2-row1 | 0.99316 | 1 |
Var 36h NI row2-row1 | 1.17402 | 1 |
Var 60h I row2-row1 | 1.12655 | 0.543 |
Var 60h NI row2-row1 | 0.99061 | 1 |
Time course 0hI-0hNI | 0.9124 | 0.454 |
Time course 12hI-12hNI | 0.96627 | 0.739 |
Time course 36hI-36hNI | 1.06806 | 0.355 |
Time course 60hI-60hNI | 0.33855 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.31656 | 0.571 |
transgenic ySAMdc/azygous control (breaker) | 2.22349 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.08637 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02538 | 0.35 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.03901 | 0.223 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 9.81061 | 0.083 |
Manapal/WT (break) | 9.16245 | 0.123 |
Manapal/WT (red) | 1.14082 | 0.413 |
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