Expression of 1-1-2.2.2.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.998550.858
27DAP/17DAP0.879820.708
39DAP/27DAP1.352650.354
41DAP/39DAP0.730480.16
42DAP/41DAP1.016141
43DAP/42DAP0.87790.583
47DAP/43DAP0.9040.671
52DAP/47DAP0.817740.513
57DAP/52DAP1.663510.524

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.040580.928
17DAP/reference0.897290.138
27DAP/reference0.738960.012
39DAP/reference1.024270.871
41DAP/reference0.851530.026
42DAP/reference1.584440.001
43DAP/reference1.255880.04
47DAP/reference1.141380.11
52DAP/reference0.877330.21
57DAP/reference1.247430.063

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.237740.142
27DAP/17DAP1.063920.885
39DAP/27DAP0.867770.179
41DAP/39DAP1.141380.579
42DAP/41DAP0.908050.267
43DAP/42DAP0.764510.026
47DAP/43DAP1.138490.448
52DAP/47DAP0.739990.078
57DAP/52DAP0.89540.403
57DAP/7DAP0.766431

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.143290.209
17DAP/reference1.040110.822
27DAP/reference0.844640.071
39DAP/reference1.620190.006
41DAP/reference1.195450.029
42DAP/reference1.259240.233
43DAP/reference0.824310.049
47DAP/reference0.922840.383
52DAP/reference1.087520.886
57DAP/reference1.028720.966

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931610.386
17DAP/reference1.087130.69
27DAP/reference1.081750.67
39DAP/reference1.071060.502
41DAP/reference1.243360.034
42DAP/reference1.595560.017
43DAP/reference1.365840.235
47DAP/reference1.821540.008
52DAP/reference0.973550.5
57DAP/reference1.146050.494

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.225310.481
17DAP/reference1.406890.085
27DAP/reference2.368690.075
39DAP/reference5.771980.218
41DAP/reference1.369410.411
42DAP/reference0.914390.552
43DAP/reference1.041460.961
47DAP/reference0.972810.478
52DAP/reference0.813130.376
57DAP/reference1.200950.214

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.118460.966
26DAP/20DAP1.284060.785
34DAP/26DAP0.991070.945
51DAP/34DAP0.982270.844
52DAP/51DAP0.983671
53DAP/52DAP0.960740.824
55DAP/53DAP1.04090.991
57DAP/55DAP1.736160.11
62DAP/57DAP0.874180.681
68DAP/62DAP1.296250.398
68DAP/14DAP2.016330.039

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.672390.035

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.474450.03
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.78572

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.13432
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.26864
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.99581
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.05671
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.015971
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.105381
IL12-4/WTpooled0.957540.581
IL1-4/WTpooled0.924891
WT/WTpooled1.020771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.994391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.984761
DC3000/delta hrp 6h1.102331
DC3000/delta hrp 12h1.11387
DC3000/delta hrp 24h0.759010.098

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.780820.059
DC3000 delta B/DC3000 delta AB0.646090.025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.911241
Exp 36h0.787640.539
Exp 60h0.641980.258

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.950871
Var 0h1.310541
Var 12h I row2-row10.814130.344
Var 12h NI row2-row11.050181
Var 36h I row2-row10.993161
Var 36h NI row2-row11.174021
Var 60h I row2-row11.126550.543
Var 60h NI row2-row10.990611
Time course 0hI-0hNI0.91240.454
Time course 12hI-12hNI0.966270.739
Time course 36hI-36hNI1.068060.355
Time course 60hI-60hNI0.338550.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.316560.571
transgenic ySAMdc/azygous control (breaker)2.223490.162
transgenic ySAMdc/azygous control (red)1.086370.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.025380.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.039010.223

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)9.810610.083
Manapal/WT (break)9.162450.123
Manapal/WT (red)1.140820.413