Tomato Functional Genomics Database (TFGD)

Expression of 1-1-2.2.3.13

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.00577	0.76
27DAP/17DAP	1.02961	1
39DAP/27DAP	0.9858	0.769
41DAP/39DAP	1.05675	0.859
42DAP/41DAP	2.80783	0.587
43DAP/42DAP	1.2356	0.793
47DAP/43DAP	0.79371	0.366
52DAP/47DAP	0.83571	0.55
57DAP/52DAP	0.94511	0.923

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.77565	0.177
17DAP/reference	0.87211	0.12
27DAP/reference	0.95757	0.484
39DAP/reference	0.98275	0.874
41DAP/reference	0.76711	0.341
42DAP/reference	2.96475	0.002
43DAP/reference	1.19503	1
47DAP/reference	1.17004
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.84257
27DAP/17DAP	4.70425	0.264
39DAP/27DAP	2.84131
41DAP/39DAP	N/A	N/A
42DAP/41DAP	2.50163	0.067
43DAP/42DAP	0.58927	0.157
47DAP/43DAP	0.87141
52DAP/47DAP	0.78684	0.603
57DAP/52DAP	0.49313	0.061
57DAP/7DAP	1.99939

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.97096	0.495
17DAP/reference	0.91762	0.039
27DAP/reference	0.85954	0.048
39DAP/reference	1.69706	0.126
41DAP/reference	1.99408	0.008
42DAP/reference	2.64622	0.007
43DAP/reference	1.68459	0.212
47DAP/reference	1.57252	0.158
52DAP/reference	1.11352	1
57DAP/reference	0.97079	0.411

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.26149	0.852
17DAP/reference	1.43533	0.017
27DAP/reference	1.13145	0.715
39DAP/reference	1.20011	0.164
41DAP/reference	1.03746	0.96
42DAP/reference	1.01364
43DAP/reference	0.87953	0.292
47DAP/reference	0.97875	0.66
52DAP/reference	1.39958	0.596
57DAP/reference	0.83079	0.318

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.83616	0.127
17DAP/reference	1.01068	0.886
27DAP/reference	1.0934	0.621
39DAP/reference	0.94996	0.393
41DAP/reference	0.91515	0.417
42DAP/reference	1.15162	0.556
43DAP/reference	1.50045	0.27
47DAP/reference	1.54812	0.017
52DAP/reference	1.19902	0.583
57DAP/reference	1.23625	0.324

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	N/A	N/A
26DAP/20DAP	0.26971
34DAP/26DAP	0.88157
51DAP/34DAP	1.42436	0.535
52DAP/51DAP	0.63512	1
53DAP/52DAP	1.2833	0.99
55DAP/53DAP	1.07295	0.939
57DAP/55DAP	0.78007
62DAP/57DAP	0.13935
68DAP/62DAP	1.62989
68DAP/14DAP	1.25874	0.311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	2.34572	0.198

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	1.20098	0.752
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.99129	1
IL2-6/WTpooled	1.15154	1
IL7-5/WTpooled	1.14081	0.792
IL7-3/WTpooled	0.98	1
IL12-4/WTpooled	1.00404	1
IL1-4/WTpooled	1.05541	1
WT/WTpooled	0.98749	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A