Expression of 1-1-2.2.3.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.9780.77
27DAP/17DAP1.014371
39DAP/27DAP1.47280.312
41DAP/39DAP1.037410.701
42DAP/41DAP1.246180.806
43DAP/42DAP1.244980.861
47DAP/43DAP1.171710.727
52DAP/47DAP0.849050.618
57DAP/52DAP0.904610.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.763410.064
17DAP/reference0.707110.035
27DAP/reference0.783840.048
39DAP/reference0.498210.005
41DAP/reference0.523370.009
42DAP/reference0.705630.001
43DAP/reference0.70839
47DAP/reference0.696520.004
52DAP/reference1.079030.607
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.070530.91
27DAP/17DAP1.152950.719
39DAP/27DAP0.918670.712
41DAP/39DAP0.920540.893
42DAP/41DAP1.320430.622
43DAP/42DAP0.935380.597
47DAP/43DAP0.96650.877
52DAP/47DAP1.244210.573
57DAP/52DAP1.527910.175
57DAP/7DAP4.13107

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.383450.115
17DAP/reference1.501250.008
27DAP/reference1.472420.041
39DAP/reference1.771570.006
41DAP/reference1.416460.083
42DAP/reference1.660130.007
43DAP/reference1.824750.011
47DAP/reference1.028210.901
52DAP/reference1.391220.076
57DAP/reference1.418170.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.804010.072
17DAP/reference0.615710.004
27DAP/reference0.984960.554
39DAP/reference1.046411
41DAP/reference1.043080.91
42DAP/reference0.857590.067
43DAP/reference0.675340.028
47DAP/reference0.798340.017
52DAP/reference0.977960.5
57DAP/reference0.787390.05

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.353670.079
17DAP/reference1.122050.854
27DAP/reference1.430620.039
39DAP/reference1.55910.078
41DAP/reference1.643730.027
42DAP/reference1.637190.013
43DAP/reference1.317160.037
47DAP/reference0.957660.434
52DAP/reference1.514980.144
57DAP/reference1.759610.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.09381
26DAP/20DAP0.840181
34DAP/26DAP0.600320.078
51DAP/34DAP0.958930.77
52DAP/51DAP1.58377
53DAP/52DAP0.990760.902
55DAP/53DAP0.580350.233
57DAP/55DAP0.755550.133
62DAP/57DAP17.44830.445
68DAP/62DAP1.945150.027
68DAP/14DAP3.142750.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.264470.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.00046
Immature Eggplant/Mature Eggplant1.16070.348
Ripe Pepper/Ripe Tomato0.84890.293
Mature Eggplant/Ripe Tomato2.327330.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.15113
IL2-6/WTpooled1.117530.531
IL7-5/WTpooled1.18978
IL7-3/WTpooled1.192680.362
IL12-4/WTpooled1.026860.891
IL1-4/WTpooled0.814010.457
WT/WTpooled0.975631

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.793880.256

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.780090.642
DC3000/delta hrp 6h1.183791
DC3000/delta hrp 12h0.81914
DC3000/delta hrp 24h0.137240.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.662180.024
DC3000 delta B/DC3000 delta AB0.462520.022

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.870550.24
Exp 36h1.1171
Exp 60h0.834490.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.537870.98
Var 12h I row2-row10.785290.338
Var 12h NI row2-row10.485111
Var 36h I row2-row10.874341
Var 36h NI row2-row11.439550.482
Var 60h I row2-row11.02668
Var 60h NI row2-row11.243670.691
Time course 0hI-0hNI1.039920.833
Time course 12hI-12hNI0.955650.687
Time course 36hI-36hNI0.78250.03
Time course 60hI-60hNI0.119440.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.104240.292
transgenic ySAMdc/azygous control (breaker)0.871230.251
transgenic ySAMdc/azygous control (red)0.983551

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.490780.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.03211

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.905361
Manapal/WT (break)1.05341
Manapal/WT (red)1.481710.133