Expression of 1-1-2.2.3.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.978 | 0.77 |
27DAP/17DAP | 1.01437 | 1 |
39DAP/27DAP | 1.4728 | 0.312 |
41DAP/39DAP | 1.03741 | 0.701 |
42DAP/41DAP | 1.24618 | 0.806 |
43DAP/42DAP | 1.24498 | 0.861 |
47DAP/43DAP | 1.17171 | 0.727 |
52DAP/47DAP | 0.84905 | 0.618 |
57DAP/52DAP | 0.90461 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76341 | 0.064 |
17DAP/reference | 0.70711 | 0.035 |
27DAP/reference | 0.78384 | 0.048 |
39DAP/reference | 0.49821 | 0.005 |
41DAP/reference | 0.52337 | 0.009 |
42DAP/reference | 0.70563 | 0.001 |
43DAP/reference | 0.70839 | |
47DAP/reference | 0.69652 | 0.004 |
52DAP/reference | 1.07903 | 0.607 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07053 | 0.91 |
27DAP/17DAP | 1.15295 | 0.719 |
39DAP/27DAP | 0.91867 | 0.712 |
41DAP/39DAP | 0.92054 | 0.893 |
42DAP/41DAP | 1.32043 | 0.622 |
43DAP/42DAP | 0.93538 | 0.597 |
47DAP/43DAP | 0.9665 | 0.877 |
52DAP/47DAP | 1.24421 | 0.573 |
57DAP/52DAP | 1.52791 | 0.175 |
57DAP/7DAP | 4.13107 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38345 | 0.115 |
17DAP/reference | 1.50125 | 0.008 |
27DAP/reference | 1.47242 | 0.041 |
39DAP/reference | 1.77157 | 0.006 |
41DAP/reference | 1.41646 | 0.083 |
42DAP/reference | 1.66013 | 0.007 |
43DAP/reference | 1.82475 | 0.011 |
47DAP/reference | 1.02821 | 0.901 |
52DAP/reference | 1.39122 | 0.076 |
57DAP/reference | 1.41817 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80401 | 0.072 |
17DAP/reference | 0.61571 | 0.004 |
27DAP/reference | 0.98496 | 0.554 |
39DAP/reference | 1.04641 | 1 |
41DAP/reference | 1.04308 | 0.91 |
42DAP/reference | 0.85759 | 0.067 |
43DAP/reference | 0.67534 | 0.028 |
47DAP/reference | 0.79834 | 0.017 |
52DAP/reference | 0.97796 | 0.5 |
57DAP/reference | 0.78739 | 0.05 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35367 | 0.079 |
17DAP/reference | 1.12205 | 0.854 |
27DAP/reference | 1.43062 | 0.039 |
39DAP/reference | 1.5591 | 0.078 |
41DAP/reference | 1.64373 | 0.027 |
42DAP/reference | 1.63719 | 0.013 |
43DAP/reference | 1.31716 | 0.037 |
47DAP/reference | 0.95766 | 0.434 |
52DAP/reference | 1.51498 | 0.144 |
57DAP/reference | 1.75961 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0938 | 1 |
26DAP/20DAP | 0.84018 | 1 |
34DAP/26DAP | 0.60032 | 0.078 |
51DAP/34DAP | 0.95893 | 0.77 |
52DAP/51DAP | 1.58377 | |
53DAP/52DAP | 0.99076 | 0.902 |
55DAP/53DAP | 0.58035 | 0.233 |
57DAP/55DAP | 0.75555 | 0.133 |
62DAP/57DAP | 17.4483 | 0.445 |
68DAP/62DAP | 1.94515 | 0.027 |
68DAP/14DAP | 3.14275 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.26447 | 0.558 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.00046 | |
Immature Eggplant/Mature Eggplant | 1.1607 | 0.348 |
Ripe Pepper/Ripe Tomato | 0.8489 | 0.293 |
Mature Eggplant/Ripe Tomato | 2.32733 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.15113 | |
IL2-6/WTpooled | 1.11753 | 0.531 |
IL7-5/WTpooled | 1.18978 | |
IL7-3/WTpooled | 1.19268 | 0.362 |
IL12-4/WTpooled | 1.02686 | 0.891 |
IL1-4/WTpooled | 0.81401 | 0.457 |
WT/WTpooled | 0.97563 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.79388 | 0.256 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.78009 | 0.642 |
DC3000/delta hrp 6h | 1.18379 | 1 |
DC3000/delta hrp 12h | 0.81914 | |
DC3000/delta hrp 24h | 0.13724 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.66218 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.46252 | 0.022 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87055 | 0.24 |
Exp 36h | 1.117 | 1 |
Exp 60h | 0.83449 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.53787 | 0.98 |
Var 12h I row2-row1 | 0.78529 | 0.338 |
Var 12h NI row2-row1 | 0.48511 | 1 |
Var 36h I row2-row1 | 0.87434 | 1 |
Var 36h NI row2-row1 | 1.43955 | 0.482 |
Var 60h I row2-row1 | 1.02668 | |
Var 60h NI row2-row1 | 1.24367 | 0.691 |
Time course 0hI-0hNI | 1.03992 | 0.833 |
Time course 12hI-12hNI | 0.95565 | 0.687 |
Time course 36hI-36hNI | 0.7825 | 0.03 |
Time course 60hI-60hNI | 0.11944 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10424 | 0.292 |
transgenic ySAMdc/azygous control (breaker) | 0.87123 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.98355 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.49078 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0321 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.90536 | 1 |
Manapal/WT (break) | 1.0534 | 1 |
Manapal/WT (red) | 1.48171 | 0.133 |
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