Expression of 1-1-2.2.4.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05295 | 0.709 |
27DAP/17DAP | 1.25428 | 0.833 |
39DAP/27DAP | 0.91651 | 0.544 |
41DAP/39DAP | 1.15356 | 0.372 |
42DAP/41DAP | 1.05451 | 0.937 |
43DAP/42DAP | 1.10281 | 0.88 |
47DAP/43DAP | 1.08662 | 0.481 |
52DAP/47DAP | 0.84743 | 0.587 |
57DAP/52DAP | 1.07069 | 0.948 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91338 | 0.115 |
17DAP/reference | 0.96004 | 0.321 |
27DAP/reference | 0.98711 | 0.552 |
39DAP/reference | 1.00866 | 0.842 |
41DAP/reference | 1.04277 | 0.516 |
42DAP/reference | 1.18083 | 0.001 |
43DAP/reference | 1.17718 | 0.008 |
47DAP/reference | 1.12219 | 0.04 |
52DAP/reference | 1.03288 | 0.498 |
57DAP/reference | 1.09083 | 0.044 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9674 | 0.595 |
27DAP/17DAP | 1.10999 | 0.621 |
39DAP/27DAP | 1.10484 | 0.483 |
41DAP/39DAP | 0.86294 | 0.015 |
42DAP/41DAP | 1.15398 | 0.47 |
43DAP/42DAP | 1.46864 | 0.032 |
47DAP/43DAP | 1.00963 | 0.973 |
52DAP/47DAP | 1.05338 | 0.799 |
57DAP/52DAP | 0.85942 | 0.113 |
57DAP/7DAP | 0.96021 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04422 | 0.813 |
17DAP/reference | 1.02213 | 0.693 |
27DAP/reference | 0.95083 | 0.348 |
39DAP/reference | 0.97804 | 0.64 |
41DAP/reference | 1.00662 | 0.741 |
42DAP/reference | 1.01974 | 0.889 |
43DAP/reference | 0.85024 | 0.139 |
47DAP/reference | 1.08466 | 0.822 |
52DAP/reference | 0.9073 | 0.254 |
57DAP/reference | 0.90792 | 0.144 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93536 | 0.487 |
17DAP/reference | 0.96045 | 0.307 |
27DAP/reference | 1.06343 | 0.404 |
39DAP/reference | 1.11647 | 0.3 |
41DAP/reference | 1.21707 | 0.234 |
42DAP/reference | 0.95933 | 0.289 |
43DAP/reference | 1.19691 | 0.522 |
47DAP/reference | 0.98115 | 0.359 |
52DAP/reference | 1.02269 | 0.702 |
57DAP/reference | 1.02229 | 0.462 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9133 | 0.362 |
17DAP/reference | 1.09932 | 0.538 |
27DAP/reference | 1.28745 | 0.721 |
39DAP/reference | 0.97839 | 0.755 |
41DAP/reference | 1.01575 | 0.826 |
42DAP/reference | 1.15394 | 0.759 |
43DAP/reference | 1.37499 | 0.024 |
47DAP/reference | 1.22942 | 0.05 |
52DAP/reference | 1.05613 | 0.854 |
57DAP/reference | 1.08007 | 0.501 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00368 | 1 |
26DAP/20DAP | 1.00169 | 1 |
34DAP/26DAP | 1.02421 | 1 |
51DAP/34DAP | 0.99175 | 0.917 |
52DAP/51DAP | 0.96053 | 1 |
53DAP/52DAP | 0.95055 | 0.797 |
55DAP/53DAP | 1.15964 | 0.566 |
57DAP/55DAP | 0.99952 | 0.944 |
62DAP/57DAP | 1.04311 | 0.868 |
68DAP/62DAP | 1.02052 | 0.991 |
68DAP/14DAP | 0.90532 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.82547 | 0.027 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.89742 | |
Mature Green Tomato/Ripe Tomato | 0.76799 | 0.182 |
Immature Eggplant/Mature Eggplant | 2.31209 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.5853 | 1 |
Mature Eggplant/Ripe Tomato | 0.42239 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93695 | 0.944 |
1-1-2/M82 | 1.14905 | 1 |
12-2/M82 | 0.97025 | 0.955 |
12-4/M82 | 1.00252 | 1 |
1-3/M82 | 0.94147 | 0.501 |
2-1-1/M82 | 0.88912 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.94625 | 1 |
3-2/M82 | 0.81678 | 1 |
4-1-1/M82 | 1.00815 | 1 |
4-1/M82 | 0.81726 | 1 |
4-3-2/M82 | 1.06711 | 0.284 |
4-3/M82 | 0.90643 | 0.72 |
5-3/M82 | 1.06527 | 1 |
6-2/M82 | 1.01877 | 1 |
6-3/M82 | 1.05095 | 1 |
7-1/M82 | 0.97927 | 1 |
7-2/M82 | 0.93319 | 0.881 |
9-3-2/M82 | 0.89713 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.92199 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.03347 | 1 |
IL12-4/WTpooled | 1.04522 | 0.624 |
IL1-4/WTpooled | 0.83981 | |
WT/WTpooled | 1.09756 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94876 | 1 |
DC3000/delta hrp 6h | 1.35164 | 1 |
DC3000/delta hrp 12h | 1.02257 | 1 |
DC3000/delta hrp 24h | 1.05276 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21977 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.08196 | 0.42 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.94854 | 1 |
Exp 36h | 1.1014 | 1 |
Exp 60h | 0.9925 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.95345 | 0.933 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.56995 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.44663 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.28412 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97365 | 0.131 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89012 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07443 | 1 |
Manapal/WT (break) | 0.48085 | 0.285 |
Manapal/WT (red) | 0.97817 | 0.728 |
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