Expression of 1-1-2.2.4.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.052950.709
27DAP/17DAP1.254280.833
39DAP/27DAP0.916510.544
41DAP/39DAP1.153560.372
42DAP/41DAP1.054510.937
43DAP/42DAP1.102810.88
47DAP/43DAP1.086620.481
52DAP/47DAP0.847430.587
57DAP/52DAP1.070690.948

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.913380.115
17DAP/reference0.960040.321
27DAP/reference0.987110.552
39DAP/reference1.008660.842
41DAP/reference1.042770.516
42DAP/reference1.180830.001
43DAP/reference1.177180.008
47DAP/reference1.122190.04
52DAP/reference1.032880.498
57DAP/reference1.090830.044

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.96740.595
27DAP/17DAP1.109990.621
39DAP/27DAP1.104840.483
41DAP/39DAP0.862940.015
42DAP/41DAP1.153980.47
43DAP/42DAP1.468640.032
47DAP/43DAP1.009630.973
52DAP/47DAP1.053380.799
57DAP/52DAP0.859420.113
57DAP/7DAP0.960211

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.044220.813
17DAP/reference1.022130.693
27DAP/reference0.950830.348
39DAP/reference0.978040.64
41DAP/reference1.006620.741
42DAP/reference1.019740.889
43DAP/reference0.850240.139
47DAP/reference1.084660.822
52DAP/reference0.90730.254
57DAP/reference0.907920.144

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.935360.487
17DAP/reference0.960450.307
27DAP/reference1.063430.404
39DAP/reference1.116470.3
41DAP/reference1.217070.234
42DAP/reference0.959330.289
43DAP/reference1.196910.522
47DAP/reference0.981150.359
52DAP/reference1.022690.702
57DAP/reference1.022290.462

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.91330.362
17DAP/reference1.099320.538
27DAP/reference1.287450.721
39DAP/reference0.978390.755
41DAP/reference1.015750.826
42DAP/reference1.153940.759
43DAP/reference1.374990.024
47DAP/reference1.229420.05
52DAP/reference1.056130.854
57DAP/reference1.080070.501

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.003681
26DAP/20DAP1.001691
34DAP/26DAP1.024211
51DAP/34DAP0.991750.917
52DAP/51DAP0.960531
53DAP/52DAP0.950550.797
55DAP/53DAP1.159640.566
57DAP/55DAP0.999520.944
62DAP/57DAP1.043110.868
68DAP/62DAP1.020520.991
68DAP/14DAP0.905320.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.825470.027

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.89742
Mature Green Tomato/Ripe Tomato0.767990.182
Immature Eggplant/Mature Eggplant2.312090.05
Ripe Pepper/Ripe Tomato0.58531
Mature Eggplant/Ripe Tomato0.422391

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.936950.944
1-1-2/M821.149051
12-2/M820.970250.955
12-4/M821.002521
1-3/M820.941470.501
2-1-1/M820.889120.465
2-1/M82N/AN/A
2-6/M820.946251
3-2/M820.816781
4-1-1/M821.008151
4-1/M820.817261
4-3-2/M821.067110.284
4-3/M820.906430.72
5-3/M821.065271
6-2/M821.018771
6-3/M821.050951
7-1/M820.979271
7-2/M820.933190.881
9-3-2/M820.897130.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.921991
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.033471
IL12-4/WTpooled1.045220.624
IL1-4/WTpooled0.83981
WT/WTpooled1.097560.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.948761
DC3000/delta hrp 6h1.351641
DC3000/delta hrp 12h1.022571
DC3000/delta hrp 24h1.052760.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.219770.042
DC3000 delta B/DC3000 delta AB1.081960.42

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.948541
Exp 36h1.10141
Exp 60h0.99251

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.953450.933
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.569950.246
transgenic ySAMdc/azygous control (breaker)1.446630.248
transgenic ySAMdc/azygous control (red)1.284120.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.973650.131

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.890120.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.074431
Manapal/WT (break)0.480850.285
Manapal/WT (red)0.978170.728