Expression of 1-1-2.2.6.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.319610.325
27DAP/17DAP1.050530.92
39DAP/27DAP1.407370.384
41DAP/39DAP0.681270.087
42DAP/41DAP1.050791
43DAP/42DAP1.273670.867
47DAP/43DAP1.109480.689
52DAP/47DAP0.950230.721
57DAP/52DAP1.568020.837

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.838450.075
17DAP/reference0.927380.129
27DAP/reference1.020520.894
39DAP/reference0.982080.762
41DAP/reference1.07570.338
42DAP/reference1.012981
43DAP/reference1.085070.403
47DAP/reference1.11810.039
52DAP/reference1.323010.033
57DAP/reference1.159660.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.236250.129
27DAP/17DAP1.293970.283
39DAP/27DAP1.032151
41DAP/39DAP1.164090.887
42DAP/41DAP1.070230.935
43DAP/42DAP0.912850.482
47DAP/43DAP1.012120.998
52DAP/47DAP1.300030.271
57DAP/52DAP1.276880.145
57DAP/7DAP1.30995

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.27610.078
17DAP/reference1.090660.297
27DAP/reference1.282510.107
39DAP/reference1.607390.007
41DAP/reference1.417570.025
42DAP/reference1.494090.024
43DAP/reference1.554080.008
47DAP/reference1.563230.036
52DAP/reference1.603230.014
57DAP/reference1.468360.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.886410.296
17DAP/reference1.013281
27DAP/reference0.99570.663
39DAP/reference1.142810.225
41DAP/reference1.207940.091
42DAP/reference0.946770.237
43DAP/reference0.813140.012
47DAP/reference1.056660.731
52DAP/reference1.049190.882
57DAP/reference1.000620.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.018431
17DAP/reference1.027770.918
27DAP/reference0.920760.097
39DAP/reference1.210590.125
41DAP/reference0.99270.682
42DAP/reference1.291370.146
43DAP/reference1.267540.27
47DAP/reference1.024450.731
52DAP/reference1.743210.058
57DAP/reference1.180890.16

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.146180.966
26DAP/20DAP1.38420.275
34DAP/26DAP1.049261
51DAP/34DAP1.228980.303
52DAP/51DAP0.582610.067
53DAP/52DAP1.211380.502
55DAP/53DAP1.191380.703
57DAP/55DAP1.43960.364
62DAP/57DAP1.400570.935
68DAP/62DAP1.720780.11
68DAP/14DAP1.872210.125

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker6.035560.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.42793
Mature Green Tomato/Ripe Tomato0.917910.487
Immature Eggplant/Mature Eggplant1.848750.096
Ripe Pepper/Ripe Tomato0.965481
Mature Eggplant/Ripe Tomato0.500970.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.115490.473
1-1-2/M821.572181
12-2/M820.8180.955
12-4/M821.136721
1-3/M822.183550.277
2-1-1/M820.8499
2-1/M820.790390.519
2-6/M821.133160.594
3-2/M821.35770.717
4-1-1/M821.34531
4-1/M820.82373
4-3-2/M821.561790.284
4-3/M821.724440.268
5-3/M820.929161
6-2/M821.569630.253
6-3/M821.258171
7-1/M820.96005
7-2/M821.609530.385
9-3-2/M822.02199

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.87741
IL2-6/WTpooled1.339670.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.156951
IL12-4/WTpooled1.184560.695
IL1-4/WTpooled1.038791
WT/WTpooled0.883521

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.96631

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.962521
DC3000/delta hrp 6h1.181630.95
DC3000/delta hrp 12h1.033841
DC3000/delta hrp 24h1.071990.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.554380.042
DC3000 delta B/DC3000 delta AB1.497520.166

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.824641
Exp 36h1.446920.489
Exp 60h1.209010.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.031861
Var 0h1.235950.421
Var 12h I row2-row11.067370.692
Var 12h NI row2-row11.234450.34
Var 36h I row2-row11.250560.41
Var 36h NI row2-row10.956760.645
Var 60h I row2-row10.830520.439
Var 60h NI row2-row10.893630.63
Time course 0hI-0hNI1.030280.867
Time course 12hI-12hNI1.018120.868
Time course 36hI-36hNI1.382260.009
Time course 60hI-60hNI3.393270.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.036450.654
transgenic ySAMdc/azygous control (breaker)1.08731
transgenic ySAMdc/azygous control (red)1.091910.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.067460.185

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.827570.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.830090.172
Manapal/WT (break)0.888631
Manapal/WT (red)1.187990.413