Expression of 1-1-2.2.6.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.31961 | 0.325 |
27DAP/17DAP | 1.05053 | 0.92 |
39DAP/27DAP | 1.40737 | 0.384 |
41DAP/39DAP | 0.68127 | 0.087 |
42DAP/41DAP | 1.05079 | 1 |
43DAP/42DAP | 1.27367 | 0.867 |
47DAP/43DAP | 1.10948 | 0.689 |
52DAP/47DAP | 0.95023 | 0.721 |
57DAP/52DAP | 1.56802 | 0.837 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83845 | 0.075 |
17DAP/reference | 0.92738 | 0.129 |
27DAP/reference | 1.02052 | 0.894 |
39DAP/reference | 0.98208 | 0.762 |
41DAP/reference | 1.0757 | 0.338 |
42DAP/reference | 1.01298 | 1 |
43DAP/reference | 1.08507 | 0.403 |
47DAP/reference | 1.1181 | 0.039 |
52DAP/reference | 1.32301 | 0.033 |
57DAP/reference | 1.15966 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23625 | 0.129 |
27DAP/17DAP | 1.29397 | 0.283 |
39DAP/27DAP | 1.03215 | 1 |
41DAP/39DAP | 1.16409 | 0.887 |
42DAP/41DAP | 1.07023 | 0.935 |
43DAP/42DAP | 0.91285 | 0.482 |
47DAP/43DAP | 1.01212 | 0.998 |
52DAP/47DAP | 1.30003 | 0.271 |
57DAP/52DAP | 1.27688 | 0.145 |
57DAP/7DAP | 1.30995 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2761 | 0.078 |
17DAP/reference | 1.09066 | 0.297 |
27DAP/reference | 1.28251 | 0.107 |
39DAP/reference | 1.60739 | 0.007 |
41DAP/reference | 1.41757 | 0.025 |
42DAP/reference | 1.49409 | 0.024 |
43DAP/reference | 1.55408 | 0.008 |
47DAP/reference | 1.56323 | 0.036 |
52DAP/reference | 1.60323 | 0.014 |
57DAP/reference | 1.46836 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88641 | 0.296 |
17DAP/reference | 1.01328 | 1 |
27DAP/reference | 0.9957 | 0.663 |
39DAP/reference | 1.14281 | 0.225 |
41DAP/reference | 1.20794 | 0.091 |
42DAP/reference | 0.94677 | 0.237 |
43DAP/reference | 0.81314 | 0.012 |
47DAP/reference | 1.05666 | 0.731 |
52DAP/reference | 1.04919 | 0.882 |
57DAP/reference | 1.00062 | 0.834 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01843 | 1 |
17DAP/reference | 1.02777 | 0.918 |
27DAP/reference | 0.92076 | 0.097 |
39DAP/reference | 1.21059 | 0.125 |
41DAP/reference | 0.9927 | 0.682 |
42DAP/reference | 1.29137 | 0.146 |
43DAP/reference | 1.26754 | 0.27 |
47DAP/reference | 1.02445 | 0.731 |
52DAP/reference | 1.74321 | 0.058 |
57DAP/reference | 1.18089 | 0.16 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14618 | 0.966 |
26DAP/20DAP | 1.3842 | 0.275 |
34DAP/26DAP | 1.04926 | 1 |
51DAP/34DAP | 1.22898 | 0.303 |
52DAP/51DAP | 0.58261 | 0.067 |
53DAP/52DAP | 1.21138 | 0.502 |
55DAP/53DAP | 1.19138 | 0.703 |
57DAP/55DAP | 1.4396 | 0.364 |
62DAP/57DAP | 1.40057 | 0.935 |
68DAP/62DAP | 1.72078 | 0.11 |
68DAP/14DAP | 1.87221 | 0.125 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 6.03556 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.42793 | |
Mature Green Tomato/Ripe Tomato | 0.91791 | 0.487 |
Immature Eggplant/Mature Eggplant | 1.84875 | 0.096 |
Ripe Pepper/Ripe Tomato | 0.96548 | 1 |
Mature Eggplant/Ripe Tomato | 0.50097 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11549 | 0.473 |
1-1-2/M82 | 1.57218 | 1 |
12-2/M82 | 0.818 | 0.955 |
12-4/M82 | 1.13672 | 1 |
1-3/M82 | 2.18355 | 0.277 |
2-1-1/M82 | 0.8499 | |
2-1/M82 | 0.79039 | 0.519 |
2-6/M82 | 1.13316 | 0.594 |
3-2/M82 | 1.3577 | 0.717 |
4-1-1/M82 | 1.3453 | 1 |
4-1/M82 | 0.82373 | |
4-3-2/M82 | 1.56179 | 0.284 |
4-3/M82 | 1.72444 | 0.268 |
5-3/M82 | 0.92916 | 1 |
6-2/M82 | 1.56963 | 0.253 |
6-3/M82 | 1.25817 | 1 |
7-1/M82 | 0.96005 | |
7-2/M82 | 1.60953 | 0.385 |
9-3-2/M82 | 2.02199 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87741 | |
IL2-6/WTpooled | 1.33967 | 0.395 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.15695 | 1 |
IL12-4/WTpooled | 1.18456 | 0.695 |
IL1-4/WTpooled | 1.03879 | 1 |
WT/WTpooled | 0.88352 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9663 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96252 | 1 |
DC3000/delta hrp 6h | 1.18163 | 0.95 |
DC3000/delta hrp 12h | 1.03384 | 1 |
DC3000/delta hrp 24h | 1.07199 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.55438 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.49752 | 0.166 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.82464 | 1 |
Exp 36h | 1.44692 | 0.489 |
Exp 60h | 1.20901 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03186 | 1 |
Var 0h | 1.23595 | 0.421 |
Var 12h I row2-row1 | 1.06737 | 0.692 |
Var 12h NI row2-row1 | 1.23445 | 0.34 |
Var 36h I row2-row1 | 1.25056 | 0.41 |
Var 36h NI row2-row1 | 0.95676 | 0.645 |
Var 60h I row2-row1 | 0.83052 | 0.439 |
Var 60h NI row2-row1 | 0.89363 | 0.63 |
Time course 0hI-0hNI | 1.03028 | 0.867 |
Time course 12hI-12hNI | 1.01812 | 0.868 |
Time course 36hI-36hNI | 1.38226 | 0.009 |
Time course 60hI-60hNI | 3.39327 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03645 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 1.0873 | 1 |
transgenic ySAMdc/azygous control (red) | 1.09191 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06746 | 0.185 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82757 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83009 | 0.172 |
Manapal/WT (break) | 0.88863 | 1 |
Manapal/WT (red) | 1.18799 | 0.413 |
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