Expression of 1-1-2.2.6.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82357 | 0.285 |
27DAP/17DAP | 0.92156 | 0.801 |
39DAP/27DAP | 2.5112 | 0.036 |
41DAP/39DAP | 0.56006 | 0.045 |
42DAP/41DAP | 0.93854 | 1 |
43DAP/42DAP | 0.94537 | 0.887 |
47DAP/43DAP | 0.46517 | 0.049 |
52DAP/47DAP | 1.52559 | 0.441 |
57DAP/52DAP | 1.57185 | 0.817 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9355 | 0.277 |
17DAP/reference | 1.02866 | 0.22 |
27DAP/reference | 1.01856 | 0.672 |
39DAP/reference | 1.06981 | 0.149 |
41DAP/reference | 1.05224 | 0.241 |
42DAP/reference | 0.9845 | 0.384 |
43DAP/reference | 1.04837 | 0.233 |
47DAP/reference | 0.94708 | 0.071 |
52DAP/reference | 0.90544 | 0.121 |
57DAP/reference | 0.9178 | 0.039 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23194 | 0.455 |
27DAP/17DAP | 1.33294 | 0.564 |
39DAP/27DAP | 0.98145 | 0.737 |
41DAP/39DAP | 1.48811 | 0.868 |
42DAP/41DAP | 1.06886 | 0.932 |
43DAP/42DAP | 0.81299 | 0.197 |
47DAP/43DAP | 1.05464 | 0.963 |
52DAP/47DAP | 1.03908 | 0.97 |
57DAP/52DAP | 1.5456 | 0.07 |
57DAP/7DAP | 1.17346 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16657 | 0.385 |
17DAP/reference | 0.86943 | 0.389 |
27DAP/reference | 0.82731 | 0.462 |
39DAP/reference | 0.86582 | 0.198 |
41DAP/reference | 1.06005 | 1 |
42DAP/reference | 0.82279 | 0.211 |
43DAP/reference | 1.12827 | 0.457 |
47DAP/reference | 1.11671 | 0.331 |
52DAP/reference | 0.87286 | 0.137 |
57DAP/reference | 1.23575 | 0.41 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03043 | 0.874 |
17DAP/reference | 1.11162 | 0.036 |
27DAP/reference | 1.00137 | 0.686 |
39DAP/reference | 1.12704 | 0.263 |
41DAP/reference | 0.98981 | 0.557 |
42DAP/reference | 0.91361 | 0.169 |
43DAP/reference | 0.89989 | 0.243 |
47DAP/reference | 0.90629 | 0.03 |
52DAP/reference | 0.99264 | 0.537 |
57DAP/reference | 1.06922 | 0.353 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97753 | 0.566 |
17DAP/reference | 0.91493 | 0.537 |
27DAP/reference | 0.992 | |
39DAP/reference | 0.84873 | 0.328 |
41DAP/reference | 1.13055 | 0.605 |
42DAP/reference | 1.31557 | 0.416 |
43DAP/reference | 1.08368 | 0.679 |
47DAP/reference | 1.03868 | 0.543 |
52DAP/reference | 1.14833 | 0.592 |
57DAP/reference | 0.77893 | 0.063 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95443 | 1 |
26DAP/20DAP | 4.04517 | 0.098 |
34DAP/26DAP | 0.80457 | 0.498 |
51DAP/34DAP | 1.38379 | 0.241 |
52DAP/51DAP | 0.92243 | 1 |
53DAP/52DAP | 0.90828 | 0.489 |
55DAP/53DAP | 0.46897 | 0.016 |
57DAP/55DAP | 1.3785 | 0.764 |
62DAP/57DAP | 1.12691 | 0.002 |
68DAP/62DAP | 0.84673 | 0.263 |
68DAP/14DAP | 0.94468 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.61702 | 0.052 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.9925 | 0.847 |
Mature Green Tomato/Ripe Tomato | 1.76567 | 0.028 |
Immature Eggplant/Mature Eggplant | 0.87186 | 0.111 |
Ripe Pepper/Ripe Tomato | 1.51014 | 1 |
Mature Eggplant/Ripe Tomato | 2.25346 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94328 | 0.944 |
1-1-2/M82 | 1.22895 | 1 |
12-2/M82 | 0.95563 | 0.74 |
12-4/M82 | 1.17584 | 1 |
1-3/M82 | 2.12342 | |
2-1-1/M82 | 0.9102 | 0.784 |
2-1/M82 | 0.92275 | |
2-6/M82 | 0.70669 | 0.501 |
3-2/M82 | 0.91186 | |
4-1-1/M82 | 0.79079 | 1 |
4-1/M82 | 1.46775 | 1 |
4-3-2/M82 | 1.31344 | 0.508 |
4-3/M82 | 1.42735 | 1 |
5-3/M82 | 1.30645 | 0.496 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.13696 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.29926 | |
9-3-2/M82 | 1.15613 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.02155 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.04554 | 0.362 |
IL12-4/WTpooled | 0.87334 | 0.581 |
IL1-4/WTpooled | 0.98257 | 1 |
WT/WTpooled | 0.95837 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.23683 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05655 | 0.724 |
DC3000/delta hrp 6h | 0.91431 | 0.95 |
DC3000/delta hrp 12h | 0.9782 | 1 |
DC3000/delta hrp 24h | 1.12634 | 0.516 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.5226 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.44064 | 0.095 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87699 | 1 |
Exp 36h | 1.24876 | 0.693 |
Exp 60h | 1.16553 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01661 | 1 |
Var 0h | 0.98465 | 1 |
Var 12h I row2-row1 | 1.33668 | 0.613 |
Var 12h NI row2-row1 | 1.31668 | 0.649 |
Var 36h I row2-row1 | 1.12973 | 0.742 |
Var 36h NI row2-row1 | 0.86221 | 0.645 |
Var 60h I row2-row1 | 0.70608 | 0.285 |
Var 60h NI row2-row1 | 0.91022 | 0.756 |
Time course 0hI-0hNI | 0.92577 | 0.522 |
Time course 12hI-12hNI | 1.1367 | 0.216 |
Time course 36hI-36hNI | 1.69961 | 0.006 |
Time course 60hI-60hNI | 4.52363 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08787 | 0.36 |
transgenic ySAMdc/azygous control (breaker) | 1.13422 | 1 |
transgenic ySAMdc/azygous control (red) | 0.99829 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05352 | 0.071 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.22525 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.90505 | 1 |
Manapal/WT (break) | 0.87974 | 0.333 |
Manapal/WT (red) | 1.28139 | 0.222 |
|
|