Expression of 1-1-2.2.6.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.823570.285
27DAP/17DAP0.921560.801
39DAP/27DAP2.51120.036
41DAP/39DAP0.560060.045
42DAP/41DAP0.938541
43DAP/42DAP0.945370.887
47DAP/43DAP0.465170.049
52DAP/47DAP1.525590.441
57DAP/52DAP1.571850.817

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.93550.277
17DAP/reference1.028660.22
27DAP/reference1.018560.672
39DAP/reference1.069810.149
41DAP/reference1.052240.241
42DAP/reference0.98450.384
43DAP/reference1.048370.233
47DAP/reference0.947080.071
52DAP/reference0.905440.121
57DAP/reference0.91780.039

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.231940.455
27DAP/17DAP1.332940.564
39DAP/27DAP0.981450.737
41DAP/39DAP1.488110.868
42DAP/41DAP1.068860.932
43DAP/42DAP0.812990.197
47DAP/43DAP1.054640.963
52DAP/47DAP1.039080.97
57DAP/52DAP1.54560.07
57DAP/7DAP1.173461

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.166570.385
17DAP/reference0.869430.389
27DAP/reference0.827310.462
39DAP/reference0.865820.198
41DAP/reference1.060051
42DAP/reference0.822790.211
43DAP/reference1.128270.457
47DAP/reference1.116710.331
52DAP/reference0.872860.137
57DAP/reference1.235750.41

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.030430.874
17DAP/reference1.111620.036
27DAP/reference1.001370.686
39DAP/reference1.127040.263
41DAP/reference0.989810.557
42DAP/reference0.913610.169
43DAP/reference0.899890.243
47DAP/reference0.906290.03
52DAP/reference0.992640.537
57DAP/reference1.069220.353

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.977530.566
17DAP/reference0.914930.537
27DAP/reference0.992
39DAP/reference0.848730.328
41DAP/reference1.130550.605
42DAP/reference1.315570.416
43DAP/reference1.083680.679
47DAP/reference1.038680.543
52DAP/reference1.148330.592
57DAP/reference0.778930.063

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.954431
26DAP/20DAP4.045170.098
34DAP/26DAP0.804570.498
51DAP/34DAP1.383790.241
52DAP/51DAP0.922431
53DAP/52DAP0.908280.489
55DAP/53DAP0.468970.016
57DAP/55DAP1.37850.764
62DAP/57DAP1.126910.002
68DAP/62DAP0.846730.263
68DAP/14DAP0.944681

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.617020.052

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.99250.847
Mature Green Tomato/Ripe Tomato1.765670.028
Immature Eggplant/Mature Eggplant0.871860.111
Ripe Pepper/Ripe Tomato1.510141
Mature Eggplant/Ripe Tomato2.253460.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.943280.944
1-1-2/M821.228951
12-2/M820.955630.74
12-4/M821.175841
1-3/M822.12342
2-1-1/M820.91020.784
2-1/M820.92275
2-6/M820.706690.501
3-2/M820.91186
4-1-1/M820.790791
4-1/M821.467751
4-3-2/M821.313440.508
4-3/M821.427351
5-3/M821.306450.496
6-2/M82N/AN/A
6-3/M821.136961
7-1/M82N/AN/A
7-2/M821.29926
9-3-2/M821.156131

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.021551
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.045540.362
IL12-4/WTpooled0.873340.581
IL1-4/WTpooled0.982571
WT/WTpooled0.958371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.236831

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.056550.724
DC3000/delta hrp 6h0.914310.95
DC3000/delta hrp 12h0.97821
DC3000/delta hrp 24h1.126340.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.52260.042
DC3000 delta B/DC3000 delta AB1.440640.095

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.876991
Exp 36h1.248760.693
Exp 60h1.165530.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.016611
Var 0h0.984651
Var 12h I row2-row11.336680.613
Var 12h NI row2-row11.316680.649
Var 36h I row2-row11.129730.742
Var 36h NI row2-row10.862210.645
Var 60h I row2-row10.706080.285
Var 60h NI row2-row10.910220.756
Time course 0hI-0hNI0.925770.522
Time course 12hI-12hNI1.13670.216
Time course 36hI-36hNI1.699610.006
Time course 60hI-60hNI4.523630.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.087870.36
transgenic ySAMdc/azygous control (breaker)1.134221
transgenic ySAMdc/azygous control (red)0.998291

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.053520.071

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.225250.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.905051
Manapal/WT (break)0.879740.333
Manapal/WT (red)1.281390.222