Expression of 1-1-2.2.6.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00928 | 0.919 |
27DAP/17DAP | 1.12209 | 0.849 |
39DAP/27DAP | 1.16044 | 0.816 |
41DAP/39DAP | 1.18544 | 0.624 |
42DAP/41DAP | 1.19425 | 0.654 |
43DAP/42DAP | 0.89356 | 0.713 |
47DAP/43DAP | 1.03802 | 0.889 |
52DAP/47DAP | 1.24764 | 0.641 |
57DAP/52DAP | 0.92564 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92306 | 0.269 |
17DAP/reference | 1.12655 | 0.185 |
27DAP/reference | 1.34392 | 0.045 |
39DAP/reference | 1.22836 | 0.229 |
41DAP/reference | 1.19198 | 0.054 |
42DAP/reference | 0.85563 | 0.019 |
43DAP/reference | 1.06147 | 0.445 |
47DAP/reference | 0.8848 | 0.004 |
52DAP/reference | 0.82438 | 0.03 |
57DAP/reference | 0.86063 | 0.078 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09458 | 0.5 |
27DAP/17DAP | 1.09592 | 0.685 |
39DAP/27DAP | 1.17432 | 0.249 |
41DAP/39DAP | 1.0014 | 0.997 |
42DAP/41DAP | 1.06399 | 0.601 |
43DAP/42DAP | 0.94208 | 0.399 |
47DAP/43DAP | 1.11068 | 0.424 |
52DAP/47DAP | 1.05936 | 0.785 |
57DAP/52DAP | 0.90499 | 0.221 |
57DAP/7DAP | 1.23997 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16999 | 0.857 |
17DAP/reference | 0.97176 | 0.599 |
27DAP/reference | 1.22679 | 0.664 |
39DAP/reference | 0.97458 | 0.552 |
41DAP/reference | 1.06463 | 0.655 |
42DAP/reference | 0.90266 | 0.169 |
43DAP/reference | 0.97903 | 0.44 |
47DAP/reference | 0.8821 | 0.066 |
52DAP/reference | 1.09207 | 0.732 |
57DAP/reference | 1.09665 | 0.5 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07316 | 0.33 |
17DAP/reference | 1.05679 | 0.176 |
27DAP/reference | 1.21589 | 0.123 |
39DAP/reference | 0.77627 | 0.062 |
41DAP/reference | 1.02251 | 1 |
42DAP/reference | 1.03358 | 1 |
43DAP/reference | 0.84713 | 0.117 |
47DAP/reference | 0.95433 | 0.292 |
52DAP/reference | 0.82865 | 0.02 |
57DAP/reference | 0.93285 | 0.243 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9784 | 0.607 |
17DAP/reference | 1.00079 | 0.934 |
27DAP/reference | 1.07271 | |
39DAP/reference | 1.04618 | 0.422 |
41DAP/reference | 1.14395 | 0.425 |
42DAP/reference | 0.94293 | 0.671 |
43DAP/reference | 1.17239 | 0.58 |
47DAP/reference | 0.84521 | 0.038 |
52DAP/reference | 0.99589 | 0.854 |
57DAP/reference | 0.96292 | 0.516 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00669 | 1 |
26DAP/20DAP | 1.15341 | 0.481 |
34DAP/26DAP | 1.05034 | 1 |
51DAP/34DAP | 1.21066 | 0.458 |
52DAP/51DAP | 0.94243 | 1 |
53DAP/52DAP | 1.04182 | 0.921 |
55DAP/53DAP | 1.12361 | 0.712 |
57DAP/55DAP | 1.283 | 0.106 |
62DAP/57DAP | 1.20261 | 0.303 |
68DAP/62DAP | 0.89355 | 0.722 |
68DAP/14DAP | 0.76268 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.58547 | 0.018 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 6.99224 | |
Mature Green Tomato/Ripe Tomato | 0.84254 | 0.182 |
Immature Eggplant/Mature Eggplant | 3.79414 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.1103 | |
Mature Eggplant/Ripe Tomato | 0.45578 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94642 | 0.883 |
1-1-2/M82 | 0.92456 | 0.958 |
12-2/M82 | 0.92823 | |
12-4/M82 | 0.99298 | 1 |
1-3/M82 | 1.08791 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.10395 | 0.695 |
3-2/M82 | 1.10901 | |
4-1-1/M82 | 1.05646 | |
4-1/M82 | 1.26666 | 0.853 |
4-3-2/M82 | 1.02943 | 1 |
4-3/M82 | 1.10353 | 1 |
5-3/M82 | 1.04214 | 0.572 |
6-2/M82 | 0.9929 | |
6-3/M82 | 1.04111 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.05172 | 1 |
9-3-2/M82 | 1.00896 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.27824 | |
IL2-6/WTpooled | 0.92349 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.99522 | 1 |
IL12-4/WTpooled | 0.85885 | 0.581 |
IL1-4/WTpooled | 1.06399 | 1 |
WT/WTpooled | 0.86298 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.22847 | 0.193 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98069 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.11716 | 1 |
DC3000/delta hrp 24h | 1.04447 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.47969 | 0.29 |
DC3000 delta B/DC3000 delta AB | 1.03397 | 0.726 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.11511 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.10714 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99747 | 1 |
Var 0h | 1.02918 | 1 |
Var 12h I row2-row1 | 1.18432 | 0.692 |
Var 12h NI row2-row1 | 1.07451 | 0.281 |
Var 36h I row2-row1 | 0.88546 | 1 |
Var 36h NI row2-row1 | 0.84366 | 0.549 |
Var 60h I row2-row1 | 0.92591 | |
Var 60h NI row2-row1 | 0.90629 | 1 |
Time course 0hI-0hNI | 1.20707 | 0.662 |
Time course 12hI-12hNI | 1.07416 | 0.747 |
Time course 36hI-36hNI | 1.23872 | 0.011 |
Time course 60hI-60hNI | 1.51592 | 0.053 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.72872 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 8.32264 | 0.161 |
transgenic ySAMdc/azygous control (red) | 1.68785 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01821 | 0.301 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.006 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.57579 | 0.172 |
Manapal/WT (break) | 0.673 | 1 |
Manapal/WT (red) | 0.78573 | 0.424 |
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