Expression of 1-1-2.2.6.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009280.919
27DAP/17DAP1.122090.849
39DAP/27DAP1.160440.816
41DAP/39DAP1.185440.624
42DAP/41DAP1.194250.654
43DAP/42DAP0.893560.713
47DAP/43DAP1.038020.889
52DAP/47DAP1.247640.641
57DAP/52DAP0.925640.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.923060.269
17DAP/reference1.126550.185
27DAP/reference1.343920.045
39DAP/reference1.228360.229
41DAP/reference1.191980.054
42DAP/reference0.855630.019
43DAP/reference1.061470.445
47DAP/reference0.88480.004
52DAP/reference0.824380.03
57DAP/reference0.860630.078

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.094580.5
27DAP/17DAP1.095920.685
39DAP/27DAP1.174320.249
41DAP/39DAP1.00140.997
42DAP/41DAP1.063990.601
43DAP/42DAP0.942080.399
47DAP/43DAP1.110680.424
52DAP/47DAP1.059360.785
57DAP/52DAP0.904990.221
57DAP/7DAP1.239971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.169990.857
17DAP/reference0.971760.599
27DAP/reference1.226790.664
39DAP/reference0.974580.552
41DAP/reference1.064630.655
42DAP/reference0.902660.169
43DAP/reference0.979030.44
47DAP/reference0.88210.066
52DAP/reference1.092070.732
57DAP/reference1.096650.5

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.073160.33
17DAP/reference1.056790.176
27DAP/reference1.215890.123
39DAP/reference0.776270.062
41DAP/reference1.022511
42DAP/reference1.033581
43DAP/reference0.847130.117
47DAP/reference0.954330.292
52DAP/reference0.828650.02
57DAP/reference0.932850.243

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97840.607
17DAP/reference1.000790.934
27DAP/reference1.07271
39DAP/reference1.046180.422
41DAP/reference1.143950.425
42DAP/reference0.942930.671
43DAP/reference1.172390.58
47DAP/reference0.845210.038
52DAP/reference0.995890.854
57DAP/reference0.962920.516

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.006691
26DAP/20DAP1.153410.481
34DAP/26DAP1.050341
51DAP/34DAP1.210660.458
52DAP/51DAP0.942431
53DAP/52DAP1.041820.921
55DAP/53DAP1.123610.712
57DAP/55DAP1.2830.106
62DAP/57DAP1.202610.303
68DAP/62DAP0.893550.722
68DAP/14DAP0.762680.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.585470.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper6.99224
Mature Green Tomato/Ripe Tomato0.842540.182
Immature Eggplant/Mature Eggplant3.794140.05
Ripe Pepper/Ripe Tomato1.1103
Mature Eggplant/Ripe Tomato0.455781

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.946420.883
1-1-2/M820.924560.958
12-2/M820.92823
12-4/M820.992981
1-3/M821.08791
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.103950.695
3-2/M821.10901
4-1-1/M821.05646
4-1/M821.266660.853
4-3-2/M821.029431
4-3/M821.103531
5-3/M821.042140.572
6-2/M820.9929
6-3/M821.041111
7-1/M82N/AN/A
7-2/M821.051721
9-3-2/M821.008961

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.27824
IL2-6/WTpooled0.923491
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.995221
IL12-4/WTpooled0.858850.581
IL1-4/WTpooled1.063991
WT/WTpooled0.862981

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.228470.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.980691
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.117161
DC3000/delta hrp 24h1.044470.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.479690.29
DC3000 delta B/DC3000 delta AB1.033970.726

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.115111
Exp 36hN/AN/A
Exp 60h1.107140.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997471
Var 0h1.029181
Var 12h I row2-row11.184320.692
Var 12h NI row2-row11.074510.281
Var 36h I row2-row10.885461
Var 36h NI row2-row10.843660.549
Var 60h I row2-row10.92591
Var 60h NI row2-row10.906291
Time course 0hI-0hNI1.207070.662
Time course 12hI-12hNI1.074160.747
Time course 36hI-36hNI1.238720.011
Time course 60hI-60hNI1.515920.053

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.728720.32
transgenic ySAMdc/azygous control (breaker)8.322640.161
transgenic ySAMdc/azygous control (red)1.687850.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.018210.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.0061

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.575790.172
Manapal/WT (break)0.6731
Manapal/WT (red)0.785730.424