Expression of 1-1-2.2.7.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.293130.523
27DAP/17DAP1.005211
39DAP/27DAP1.427330.374
41DAP/39DAP0.590830.047
42DAP/41DAP1.019471
43DAP/42DAP1.00740.937
47DAP/43DAP0.723950.185
52DAP/47DAP1.043860.945
57DAP/52DAP1.49860.558

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.284030.049
17DAP/reference1.205730.122
27DAP/reference1.135670.384
39DAP/reference1.130860.318
41DAP/reference1.623110.013
42DAP/reference1.322850.002
43DAP/reference1.121570.425
47DAP/reference1.141980.306
52DAP/reference1.397690.158
57DAP/reference0.85090.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.153560.168
27DAP/17DAP0.973670.878
39DAP/27DAP0.8160.036
41DAP/39DAP1.234160.641
42DAP/41DAP1.022941
43DAP/42DAP0.821120.034
47DAP/43DAP1.030310.848
52DAP/47DAP0.892040.3
57DAP/52DAP0.962040.617
57DAP/7DAP0.860121

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.070360.625
17DAP/reference1.253280.019
27DAP/reference1.116190.246
39DAP/reference1.141930.333
41DAP/reference1.14790.303
42DAP/reference1.01220.828
43DAP/reference0.898680.11
47DAP/reference0.86270.222
52DAP/reference1.312180.02
57DAP/reference1.184140.158

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.347870.38
17DAP/reference1.450730.021
27DAP/reference1.795060.016
39DAP/reference1.130160.571
41DAP/reference1.119880.382
42DAP/reference1.500560.019
43DAP/reference1.658450.13
47DAP/reference1.392590.008
52DAP/reference1.432190.018
57DAP/reference1.800520.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.057740.846
17DAP/reference1.352840.105
27DAP/reference1.028120.934
39DAP/reference1.22540.011
41DAP/reference1.139190.796
42DAP/reference1.227640.313
43DAP/reference1.324160.053
47DAP/reference1.453060.005
52DAP/reference1.319010.212
57DAP/reference1.178710.095

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.108121
26DAP/20DAP1.083490.77
34DAP/26DAP1.012441
51DAP/34DAP0.834810.095
52DAP/51DAP0.956151
53DAP/52DAP0.925260.621
55DAP/53DAP0.973030.746
57DAP/55DAP1.278660.474
62DAP/57DAP1.051220.935
68DAP/62DAP1.004490.885
68DAP/14DAP0.94442

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.869780.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.524580.166
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato6.37527

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.986291
IL2-6/WTpooled0.94196
IL7-5/WTpooled1.115321
IL7-3/WTpooled0.849560.418
IL12-4/WTpooled1.171550.532
IL1-4/WTpooled0.948280.562
WT/WTpooled0.899051

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.09571

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.802571
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.175521
DC3000/delta hrp 24h0.48860.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.81460.025
DC3000 delta B/DC3000 delta AB0.881430.091

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.892671
Exp 36hN/AN/A
Exp 60h0.708610.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.006871
Var 0h1.046491
Var 12h I row2-row11.012321
Var 12h NI row2-row10.968490.906
Var 36h I row2-row11.163140.339
Var 36h NI row2-row10.944610.743
Var 60h I row2-row11.044831
Var 60h NI row2-row10.899490.69
Time course 0hI-0hNI0.95850.618
Time course 12hI-12hNI1.003130.9
Time course 36hI-36hNI1.239210.089
Time course 60hI-60hNI1.266610.216

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.806180.529
transgenic ySAMdc/azygous control (breaker)1.135481
transgenic ySAMdc/azygous control (red)0.973451

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.946890.07

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.996790.228

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.502920.14
Manapal/WT (break)1.835350.183
Manapal/WT (red)0.969180.863