Expression of 1-1-2.2.7.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29313 | 0.523 |
27DAP/17DAP | 1.00521 | 1 |
39DAP/27DAP | 1.42733 | 0.374 |
41DAP/39DAP | 0.59083 | 0.047 |
42DAP/41DAP | 1.01947 | 1 |
43DAP/42DAP | 1.0074 | 0.937 |
47DAP/43DAP | 0.72395 | 0.185 |
52DAP/47DAP | 1.04386 | 0.945 |
57DAP/52DAP | 1.4986 | 0.558 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28403 | 0.049 |
17DAP/reference | 1.20573 | 0.122 |
27DAP/reference | 1.13567 | 0.384 |
39DAP/reference | 1.13086 | 0.318 |
41DAP/reference | 1.62311 | 0.013 |
42DAP/reference | 1.32285 | 0.002 |
43DAP/reference | 1.12157 | 0.425 |
47DAP/reference | 1.14198 | 0.306 |
52DAP/reference | 1.39769 | 0.158 |
57DAP/reference | 0.8509 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15356 | 0.168 |
27DAP/17DAP | 0.97367 | 0.878 |
39DAP/27DAP | 0.816 | 0.036 |
41DAP/39DAP | 1.23416 | 0.641 |
42DAP/41DAP | 1.02294 | 1 |
43DAP/42DAP | 0.82112 | 0.034 |
47DAP/43DAP | 1.03031 | 0.848 |
52DAP/47DAP | 0.89204 | 0.3 |
57DAP/52DAP | 0.96204 | 0.617 |
57DAP/7DAP | 0.86012 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07036 | 0.625 |
17DAP/reference | 1.25328 | 0.019 |
27DAP/reference | 1.11619 | 0.246 |
39DAP/reference | 1.14193 | 0.333 |
41DAP/reference | 1.1479 | 0.303 |
42DAP/reference | 1.0122 | 0.828 |
43DAP/reference | 0.89868 | 0.11 |
47DAP/reference | 0.8627 | 0.222 |
52DAP/reference | 1.31218 | 0.02 |
57DAP/reference | 1.18414 | 0.158 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34787 | 0.38 |
17DAP/reference | 1.45073 | 0.021 |
27DAP/reference | 1.79506 | 0.016 |
39DAP/reference | 1.13016 | 0.571 |
41DAP/reference | 1.11988 | 0.382 |
42DAP/reference | 1.50056 | 0.019 |
43DAP/reference | 1.65845 | 0.13 |
47DAP/reference | 1.39259 | 0.008 |
52DAP/reference | 1.43219 | 0.018 |
57DAP/reference | 1.80052 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05774 | 0.846 |
17DAP/reference | 1.35284 | 0.105 |
27DAP/reference | 1.02812 | 0.934 |
39DAP/reference | 1.2254 | 0.011 |
41DAP/reference | 1.13919 | 0.796 |
42DAP/reference | 1.22764 | 0.313 |
43DAP/reference | 1.32416 | 0.053 |
47DAP/reference | 1.45306 | 0.005 |
52DAP/reference | 1.31901 | 0.212 |
57DAP/reference | 1.17871 | 0.095 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10812 | 1 |
26DAP/20DAP | 1.08349 | 0.77 |
34DAP/26DAP | 1.01244 | 1 |
51DAP/34DAP | 0.83481 | 0.095 |
52DAP/51DAP | 0.95615 | 1 |
53DAP/52DAP | 0.92526 | 0.621 |
55DAP/53DAP | 0.97303 | 0.746 |
57DAP/55DAP | 1.27866 | 0.474 |
62DAP/57DAP | 1.05122 | 0.935 |
68DAP/62DAP | 1.00449 | 0.885 |
68DAP/14DAP | 0.94442 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.86978 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.52458 | 0.166 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 6.37527 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98629 | 1 |
IL2-6/WTpooled | 0.94196 | |
IL7-5/WTpooled | 1.11532 | 1 |
IL7-3/WTpooled | 0.84956 | 0.418 |
IL12-4/WTpooled | 1.17155 | 0.532 |
IL1-4/WTpooled | 0.94828 | 0.562 |
WT/WTpooled | 0.89905 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0957 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.80257 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.17552 | 1 |
DC3000/delta hrp 24h | 0.4886 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.8146 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.88143 | 0.091 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89267 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.70861 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00687 | 1 |
Var 0h | 1.04649 | 1 |
Var 12h I row2-row1 | 1.01232 | 1 |
Var 12h NI row2-row1 | 0.96849 | 0.906 |
Var 36h I row2-row1 | 1.16314 | 0.339 |
Var 36h NI row2-row1 | 0.94461 | 0.743 |
Var 60h I row2-row1 | 1.04483 | 1 |
Var 60h NI row2-row1 | 0.89949 | 0.69 |
Time course 0hI-0hNI | 0.9585 | 0.618 |
Time course 12hI-12hNI | 1.00313 | 0.9 |
Time course 36hI-36hNI | 1.23921 | 0.089 |
Time course 60hI-60hNI | 1.26661 | 0.216 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.80618 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 1.13548 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97345 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94689 | 0.07 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.99679 | 0.228 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.50292 | 0.14 |
Manapal/WT (break) | 1.83535 | 0.183 |
Manapal/WT (red) | 0.96918 | 0.863 |
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