Expression of 1-1-2.2.7.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9934 | 0.876 |
27DAP/17DAP | 1.34216 | 0.749 |
39DAP/27DAP | 0.91637 | 0.482 |
41DAP/39DAP | 1.14675 | 0.728 |
42DAP/41DAP | 1.20036 | 0.852 |
43DAP/42DAP | 1.09385 | 1 |
47DAP/43DAP | 0.99572 | 0.934 |
52DAP/47DAP | 0.91764 | 0.752 |
57DAP/52DAP | 0.87212 | 0.82 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96718 | 0.513 |
17DAP/reference | 1.15848 | 0.108 |
27DAP/reference | 1.28278 | 0.011 |
39DAP/reference | 1.4023 | 0.07 |
41DAP/reference | 1.29252 | 0.013 |
42DAP/reference | 1.3117 | 0.001 |
43DAP/reference | 1.70578 | 0.006 |
47DAP/reference | 1.97295 | 0.001 |
52DAP/reference | 1.7382 | 0.007 |
57DAP/reference | 1.69712 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16922 | 0.236 |
27DAP/17DAP | 1.01168 | 1 |
39DAP/27DAP | 0.99162 | 0.932 |
41DAP/39DAP | 1.0006 | 1 |
42DAP/41DAP | 0.94316 | 0.649 |
43DAP/42DAP | 1.17037 | 0.382 |
47DAP/43DAP | 1.04864 | 0.827 |
52DAP/47DAP | 1.33806 | 0.261 |
57DAP/52DAP | 1.28522 | 0.33 |
57DAP/7DAP | 1.22691 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05395 | 0.664 |
17DAP/reference | 1.16716 | 0.399 |
27DAP/reference | 1.08088 | 0.551 |
39DAP/reference | 1.03168 | 1 |
41DAP/reference | 1.01255 | 0.848 |
42DAP/reference | 0.99723 | 0.675 |
43DAP/reference | 1.12339 | 0.537 |
47DAP/reference | 1.44624 | 0.178 |
52DAP/reference | 1.10346 | 0.526 |
57DAP/reference | 1.1562 | 0.066 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84998 | 0.231 |
17DAP/reference | 1.05682 | 0.92 |
27DAP/reference | 1.37406 | 0.104 |
39DAP/reference | 1.2411 | 0.029 |
41DAP/reference | 1.09656 | 0.406 |
42DAP/reference | 1.20087 | 0.105 |
43DAP/reference | 0.84049 | 0.181 |
47DAP/reference | 1.30281 | 0.013 |
52DAP/reference | 0.98522 | 0.576 |
57DAP/reference | 0.91603 | 0.298 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09235 | 0.444 |
17DAP/reference | 0.91853 | 0.433 |
27DAP/reference | 0.95053 | 0.465 |
39DAP/reference | 1.09069 | 0.406 |
41DAP/reference | 1.12843 | 0.286 |
42DAP/reference | 1.08641 | 0.836 |
43DAP/reference | 1.24875 | 0.452 |
47DAP/reference | 1.59943 | 0.01 |
52DAP/reference | 1.77297 | 0.035 |
57DAP/reference | 2.25842 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.93779 | 0.966 |
26DAP/20DAP | 1.10415 | 1 |
34DAP/26DAP | 0.83613 | 0.682 |
51DAP/34DAP | 1.09283 | 0.909 |
52DAP/51DAP | 0.9724 | 1 |
53DAP/52DAP | 0.98628 | 0.938 |
55DAP/53DAP | 1.0302 | 0.994 |
57DAP/55DAP | 0.97927 | 0.891 |
62DAP/57DAP | 0.74933 | 0.871 |
68DAP/62DAP | 1.4644 | 0.912 |
68DAP/14DAP | 1.83928 | 0.656 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.086 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.50824 | 0.093 |
Mature Green Tomato/Ripe Tomato | 0.76691 | 0.317 |
Immature Eggplant/Mature Eggplant | 1.02113 | 1 |
Ripe Pepper/Ripe Tomato | 0.74554 | 1 |
Mature Eggplant/Ripe Tomato | 0.88347 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.84061 | |
1-1-2/M82 | 0.97357 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.65431 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | 0.95384 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.07486 | |
9-3-2/M82 | 1.0189 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.97997 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.03892 | 1 |
IL12-4/WTpooled | 0.87894 | 1 |
IL1-4/WTpooled | 1.40303 | |
WT/WTpooled | 1.00716 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05024 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.43009 | 0.656 |
DC3000/delta hrp 6h | 1.28564 | 1 |
DC3000/delta hrp 12h | 0.97596 | 1 |
DC3000/delta hrp 24h | 1.19337 | 0.271 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.14274 | 0.406 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08535 | 1 |
Exp 36h | 1.15713 | 0.409 |
Exp 60h | 1.21087 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.87324 | 1 |
Var 0h | 0.67407 | 0.457 |
Var 12h I row2-row1 | 1.22446 | 0.348 |
Var 12h NI row2-row1 | 1.40254 | 1 |
Var 36h I row2-row1 | 1.2105 | 0.368 |
Var 36h NI row2-row1 | 0.74328 | 0.45 |
Var 60h I row2-row1 | 0.92854 | 0.832 |
Var 60h NI row2-row1 | 0.96088 | 0.516 |
Time course 0hI-0hNI | 0.92427 | 0.725 |
Time course 12hI-12hNI | 1.06829 | 0.774 |
Time course 36hI-36hNI | 1.45879 | 0.007 |
Time course 60hI-60hNI | 2.33267 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13761 | 0.321 |
transgenic ySAMdc/azygous control (breaker) | 1.06214 | 1 |
transgenic ySAMdc/azygous control (red) | 1.0718 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.40961 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.63296 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83991 | 1 |
Manapal/WT (break) | 1.0002 | 1 |
Manapal/WT (red) | 0.99883 | 1 |
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