Expression of 1-1-2.2.7.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.99340.876
27DAP/17DAP1.342160.749
39DAP/27DAP0.916370.482
41DAP/39DAP1.146750.728
42DAP/41DAP1.200360.852
43DAP/42DAP1.093851
47DAP/43DAP0.995720.934
52DAP/47DAP0.917640.752
57DAP/52DAP0.872120.82

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.967180.513
17DAP/reference1.158480.108
27DAP/reference1.282780.011
39DAP/reference1.40230.07
41DAP/reference1.292520.013
42DAP/reference1.31170.001
43DAP/reference1.705780.006
47DAP/reference1.972950.001
52DAP/reference1.73820.007
57DAP/reference1.697120.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.169220.236
27DAP/17DAP1.011681
39DAP/27DAP0.991620.932
41DAP/39DAP1.00061
42DAP/41DAP0.943160.649
43DAP/42DAP1.170370.382
47DAP/43DAP1.048640.827
52DAP/47DAP1.338060.261
57DAP/52DAP1.285220.33
57DAP/7DAP1.226910.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.053950.664
17DAP/reference1.167160.399
27DAP/reference1.080880.551
39DAP/reference1.031681
41DAP/reference1.012550.848
42DAP/reference0.997230.675
43DAP/reference1.123390.537
47DAP/reference1.446240.178
52DAP/reference1.103460.526
57DAP/reference1.15620.066

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.849980.231
17DAP/reference1.056820.92
27DAP/reference1.374060.104
39DAP/reference1.24110.029
41DAP/reference1.096560.406
42DAP/reference1.200870.105
43DAP/reference0.840490.181
47DAP/reference1.302810.013
52DAP/reference0.985220.576
57DAP/reference0.916030.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092350.444
17DAP/reference0.918530.433
27DAP/reference0.950530.465
39DAP/reference1.090690.406
41DAP/reference1.128430.286
42DAP/reference1.086410.836
43DAP/reference1.248750.452
47DAP/reference1.599430.01
52DAP/reference1.772970.035
57DAP/reference2.258420.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.937790.966
26DAP/20DAP1.104151
34DAP/26DAP0.836130.682
51DAP/34DAP1.092830.909
52DAP/51DAP0.97241
53DAP/52DAP0.986280.938
55DAP/53DAP1.03020.994
57DAP/55DAP0.979270.891
62DAP/57DAP0.749330.871
68DAP/62DAP1.46440.912
68DAP/14DAP1.839280.656

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.0860.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.508240.093
Mature Green Tomato/Ripe Tomato0.766910.317
Immature Eggplant/Mature Eggplant1.021131
Ripe Pepper/Ripe Tomato0.745541
Mature Eggplant/Ripe Tomato0.883471

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.84061
1-1-2/M820.97357
12-2/M82N/AN/A
12-4/M820.65431
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M820.95384
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.07486
9-3-2/M821.0189

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.979971
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.038921
IL12-4/WTpooled0.878941
IL1-4/WTpooled1.40303
WT/WTpooled1.007161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.050241

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.430090.656
DC3000/delta hrp 6h1.285641
DC3000/delta hrp 12h0.975961
DC3000/delta hrp 24h1.193370.271

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.142740.406

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.085351
Exp 36h1.157130.409
Exp 60h1.210870.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.873241
Var 0h0.674070.457
Var 12h I row2-row11.224460.348
Var 12h NI row2-row11.402541
Var 36h I row2-row11.21050.368
Var 36h NI row2-row10.743280.45
Var 60h I row2-row10.928540.832
Var 60h NI row2-row10.960880.516
Time course 0hI-0hNI0.924270.725
Time course 12hI-12hNI1.068290.774
Time course 36hI-36hNI1.458790.007
Time course 60hI-60hNI2.332670.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.137610.321
transgenic ySAMdc/azygous control (breaker)1.062141
transgenic ySAMdc/azygous control (red)1.07180.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.409610.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.632960.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.839911
Manapal/WT (break)1.00021
Manapal/WT (red)0.998831