Expression of 1-1-2.2.7.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.026560.947
27DAP/17DAP1.093410.872
39DAP/27DAP0.958690.682
41DAP/39DAP1.048430.871
42DAP/41DAP0.991021
43DAP/42DAP1.015931
47DAP/43DAP1.208770.195
52DAP/47DAP0.908370.716
57DAP/52DAP1.039370.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.824230.111
17DAP/reference0.517420.007
27DAP/reference0.928880.444
39DAP/reference0.67340.027
41DAP/reference0.456830.008
42DAP/reference0.864230.034
43DAP/reference0.77890.017
47DAP/reference0.87460.127
52DAP/reference1.256780.141
57DAP/reference1.421390.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.959380.629
27DAP/17DAP1.035230.942
39DAP/27DAP0.9630.66
41DAP/39DAP1.06130.735
42DAP/41DAP1.070560.593
43DAP/42DAP1.007421
47DAP/43DAP1.02880.88
52DAP/47DAP1.044610.851
57DAP/52DAP1.022780.899
57DAP/7DAP1.011571

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036830.761
17DAP/reference1.448110.077
27DAP/reference1.170720.371
39DAP/reference1.036091
41DAP/reference1.026180.949
42DAP/reference1.020731
43DAP/reference1.018090.974
47DAP/reference1.329740.033
52DAP/reference1.046580.886
57DAP/reference0.897990.215

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.719880.134
17DAP/reference0.441420.007
27DAP/reference0.568640.005
39DAP/reference1.289210.247
41DAP/reference1.147990.362
42DAP/reference1.0870.621
43DAP/reference0.630130.039
47DAP/reference0.782070.054
52DAP/reference1.193930.006
57DAP/reference0.564380.017

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.474530.09
17DAP/reference1.094860.886
27DAP/reference1.371540.027
39DAP/reference1.316970.016
41DAP/reference1.206510.657
42DAP/reference0.961980.671
43DAP/reference1.197180.148
47DAP/reference0.873850.315
52DAP/reference1.162120.473
57DAP/reference1.636240.028

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.907390.997
26DAP/20DAP0.963481
34DAP/26DAP0.966330.936
51DAP/34DAP0.926330.482
52DAP/51DAP1.099370.207
53DAP/52DAP0.87917
55DAP/53DAP1.086660.748
57DAP/55DAP0.770760.427
62DAP/57DAP2.162660.047
68DAP/62DAP16.26910.018
68DAP/14DAP21.93830.016

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.739510.03

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.57760.058
Mature Green Tomato/Ripe Tomato1.198490.478
Immature Eggplant/Mature Eggplant0.377640.057
Ripe Pepper/Ripe Tomato4.406521
Mature Eggplant/Ripe Tomato22.8783

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.32879
IL2-6/WTpooled0.79957
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.16428
IL12-4/WTpooled0.80710.478
IL1-4/WTpooled1.062451
WT/WTpooled0.84333

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.988341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.946781
DC3000/delta hrp 6h1.068581
DC3000/delta hrp 12h1.175881
DC3000/delta hrp 24h0.718830.039

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.997071
DC3000 delta B/DC3000 delta AB1.016790.665

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.964291
Exp 36h0.755160.623
Exp 60h0.608470.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.04738
Var 0h1.079120.374
Var 12h I row2-row10.89040.338
Var 12h NI row2-row10.95704
Var 36h I row2-row10.97660.805
Var 36h NI row2-row11.18355
Var 60h I row2-row11.218931
Var 60h NI row2-row11.077490.904
Time course 0hI-0hNI1.017810.852
Time course 12hI-12hNI0.997581
Time course 36hI-36hNI0.938390.255
Time course 60hI-60hNI0.629880.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.984490.862
transgenic ySAMdc/azygous control (breaker)1.182691
transgenic ySAMdc/azygous control (red)1.008311

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.549540.085

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.500720.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)6.99980.083
Manapal/WT (break)4.62370.13
Manapal/WT (red)1.671440.222