Expression of 1-1-2.2.7.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02656 | 0.947 |
27DAP/17DAP | 1.09341 | 0.872 |
39DAP/27DAP | 0.95869 | 0.682 |
41DAP/39DAP | 1.04843 | 0.871 |
42DAP/41DAP | 0.99102 | 1 |
43DAP/42DAP | 1.01593 | 1 |
47DAP/43DAP | 1.20877 | 0.195 |
52DAP/47DAP | 0.90837 | 0.716 |
57DAP/52DAP | 1.03937 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82423 | 0.111 |
17DAP/reference | 0.51742 | 0.007 |
27DAP/reference | 0.92888 | 0.444 |
39DAP/reference | 0.6734 | 0.027 |
41DAP/reference | 0.45683 | 0.008 |
42DAP/reference | 0.86423 | 0.034 |
43DAP/reference | 0.7789 | 0.017 |
47DAP/reference | 0.8746 | 0.127 |
52DAP/reference | 1.25678 | 0.141 |
57DAP/reference | 1.42139 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95938 | 0.629 |
27DAP/17DAP | 1.03523 | 0.942 |
39DAP/27DAP | 0.963 | 0.66 |
41DAP/39DAP | 1.0613 | 0.735 |
42DAP/41DAP | 1.07056 | 0.593 |
43DAP/42DAP | 1.00742 | 1 |
47DAP/43DAP | 1.0288 | 0.88 |
52DAP/47DAP | 1.04461 | 0.851 |
57DAP/52DAP | 1.02278 | 0.899 |
57DAP/7DAP | 1.01157 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03683 | 0.761 |
17DAP/reference | 1.44811 | 0.077 |
27DAP/reference | 1.17072 | 0.371 |
39DAP/reference | 1.03609 | 1 |
41DAP/reference | 1.02618 | 0.949 |
42DAP/reference | 1.02073 | 1 |
43DAP/reference | 1.01809 | 0.974 |
47DAP/reference | 1.32974 | 0.033 |
52DAP/reference | 1.04658 | 0.886 |
57DAP/reference | 0.89799 | 0.215 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.71988 | 0.134 |
17DAP/reference | 0.44142 | 0.007 |
27DAP/reference | 0.56864 | 0.005 |
39DAP/reference | 1.28921 | 0.247 |
41DAP/reference | 1.14799 | 0.362 |
42DAP/reference | 1.087 | 0.621 |
43DAP/reference | 0.63013 | 0.039 |
47DAP/reference | 0.78207 | 0.054 |
52DAP/reference | 1.19393 | 0.006 |
57DAP/reference | 0.56438 | 0.017 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47453 | 0.09 |
17DAP/reference | 1.09486 | 0.886 |
27DAP/reference | 1.37154 | 0.027 |
39DAP/reference | 1.31697 | 0.016 |
41DAP/reference | 1.20651 | 0.657 |
42DAP/reference | 0.96198 | 0.671 |
43DAP/reference | 1.19718 | 0.148 |
47DAP/reference | 0.87385 | 0.315 |
52DAP/reference | 1.16212 | 0.473 |
57DAP/reference | 1.63624 | 0.028 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90739 | 0.997 |
26DAP/20DAP | 0.96348 | 1 |
34DAP/26DAP | 0.96633 | 0.936 |
51DAP/34DAP | 0.92633 | 0.482 |
52DAP/51DAP | 1.09937 | 0.207 |
53DAP/52DAP | 0.87917 | |
55DAP/53DAP | 1.08666 | 0.748 |
57DAP/55DAP | 0.77076 | 0.427 |
62DAP/57DAP | 2.16266 | 0.047 |
68DAP/62DAP | 16.2691 | 0.018 |
68DAP/14DAP | 21.9383 | 0.016 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.73951 | 0.03 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.5776 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.19849 | 0.478 |
Immature Eggplant/Mature Eggplant | 0.37764 | 0.057 |
Ripe Pepper/Ripe Tomato | 4.40652 | 1 |
Mature Eggplant/Ripe Tomato | 22.8783 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.32879 | |
IL2-6/WTpooled | 0.79957 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.16428 | |
IL12-4/WTpooled | 0.8071 | 0.478 |
IL1-4/WTpooled | 1.06245 | 1 |
WT/WTpooled | 0.84333 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98834 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94678 | 1 |
DC3000/delta hrp 6h | 1.06858 | 1 |
DC3000/delta hrp 12h | 1.17588 | 1 |
DC3000/delta hrp 24h | 0.71883 | 0.039 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.99707 | 1 |
DC3000 delta B/DC3000 delta AB | 1.01679 | 0.665 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96429 | 1 |
Exp 36h | 0.75516 | 0.623 |
Exp 60h | 0.60847 | 0.278 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04738 | |
Var 0h | 1.07912 | 0.374 |
Var 12h I row2-row1 | 0.8904 | 0.338 |
Var 12h NI row2-row1 | 0.95704 | |
Var 36h I row2-row1 | 0.9766 | 0.805 |
Var 36h NI row2-row1 | 1.18355 | |
Var 60h I row2-row1 | 1.21893 | 1 |
Var 60h NI row2-row1 | 1.07749 | 0.904 |
Time course 0hI-0hNI | 1.01781 | 0.852 |
Time course 12hI-12hNI | 0.99758 | 1 |
Time course 36hI-36hNI | 0.93839 | 0.255 |
Time course 60hI-60hNI | 0.62988 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98449 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.18269 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00831 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.54954 | 0.085 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.50072 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 6.9998 | 0.083 |
Manapal/WT (break) | 4.6237 | 0.13 |
Manapal/WT (red) | 1.67144 | 0.222 |
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