Expression of 1-1-2.2.7.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.58681 | 0.014 |
27DAP/17DAP | 0.58984 | 0.043 |
39DAP/27DAP | 1.14735 | 1 |
41DAP/39DAP | 0.71044 | 0.171 |
42DAP/41DAP | 1.82948 | 0.059 |
43DAP/42DAP | 2.2075 | 0.213 |
47DAP/43DAP | 0.5147 | 0.049 |
52DAP/47DAP | 0.71907 | 0.294 |
57DAP/52DAP | 1.06945 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.03163 | 0.006 |
17DAP/reference | 1.85687 | 0.028 |
27DAP/reference | 1.95469 | 0.011 |
39DAP/reference | 0.86374 | 0.261 |
41DAP/reference | 0.83542 | 0.114 |
42DAP/reference | 0.83674 | 0.015 |
43DAP/reference | 0.64817 | 0.013 |
47DAP/reference | 0.53837 | 0.001 |
52DAP/reference | 0.76094 | 0.021 |
57DAP/reference | 0.82846 | 0.023 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92279 | 0.56 |
27DAP/17DAP | 0.92199 | 0.684 |
39DAP/27DAP | 0.61703 | 0.044 |
41DAP/39DAP | 0.30409 | 0.013 |
42DAP/41DAP | 1.02209 | 0.892 |
43DAP/42DAP | 3.03666 | 0.013 |
47DAP/43DAP | 0.59037 | 0.009 |
52DAP/47DAP | 1.49881 | 0.343 |
57DAP/52DAP | 1.10985 | 0.763 |
57DAP/7DAP | 0.48418 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.29288 | 0.024 |
17DAP/reference | 1.28557 | 0.028 |
27DAP/reference | 1.04484 | 0.664 |
39DAP/reference | 0.9653 | 0.307 |
41DAP/reference | 0.79094 | 0.04 |
42DAP/reference | 1.17491 | 0.1 |
43DAP/reference | 0.95258 | 0.403 |
47DAP/reference | 0.65945 | 0.038 |
52DAP/reference | 0.92527 | 0.254 |
57DAP/reference | 0.89569 | 0.057 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.86042 | 0.069 |
17DAP/reference | 2.2433 | 0.007 |
27DAP/reference | 1.59812 | 0.029 |
39DAP/reference | 0.58031 | 0.012 |
41DAP/reference | 1.01793 | 0.649 |
42DAP/reference | 1.65528 | 0.013 |
43DAP/reference | 0.78592 | 0.066 |
47DAP/reference | 0.86769 | 0.133 |
52DAP/reference | 0.47003 | 0.003 |
57DAP/reference | 0.37695 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.67925 | 0.015 |
17DAP/reference | 1.7677 | 0.095 |
27DAP/reference | 1.59716 | 0.019 |
39DAP/reference | 1.07408 | 0.189 |
41DAP/reference | 1.12221 | 0.257 |
42DAP/reference | 0.89561 | 0.172 |
43DAP/reference | 0.81326 | 0.047 |
47DAP/reference | 0.43059 | 0.004 |
52DAP/reference | 0.49044 | 0.097 |
57DAP/reference | 0.6113 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96913 | 1 |
26DAP/20DAP | 0.99813 | 1 |
34DAP/26DAP | 1.16272 | 1 |
51DAP/34DAP | 0.61078 | 0.07 |
52DAP/51DAP | 1.12832 | 0.261 |
53DAP/52DAP | 0.64105 | 0.052 |
55DAP/53DAP | 0.52398 | 0.029 |
57DAP/55DAP | 0.90923 | 0.677 |
62DAP/57DAP | 1.3024 | 0.002 |
68DAP/62DAP | 0.68785 | 0.378 |
68DAP/14DAP | 0.23454 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.43153 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.98593 | 0.058 |
Mature Green Tomato/Ripe Tomato | 2.89143 | 0.02 |
Immature Eggplant/Mature Eggplant | 0.31194 | 0.057 |
Ripe Pepper/Ripe Tomato | 30.9029 | 0.258 |
Mature Eggplant/Ripe Tomato | 43.3931 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.76491 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.22923 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 2.31898 | |
4-3-2/M82 | 0.68396 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.07412 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.66563 | |
9-3-2/M82 | 1.4397 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.99579 | 1 |
IL2-6/WTpooled | 1.14046 | 0.419 |
IL7-5/WTpooled | 0.68616 | 1 |
IL7-3/WTpooled | 0.87628 | 0.418 |
IL12-4/WTpooled | 1.0209 | 0.839 |
IL1-4/WTpooled | 0.88682 | 0.562 |
WT/WTpooled | 0.98695 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14144 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97371 | 1 |
DC3000/delta hrp 6h | 0.91437 | 0.95 |
DC3000/delta hrp 12h | 1.1147 | 1 |
DC3000/delta hrp 24h | 0.45412 | 0.037 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.51945 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.59209 | 0.022 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03493 | 1 |
Exp 36h | 0.83136 | 0.504 |
Exp 60h | 0.85158 | 0.253 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02611 | 1 |
Var 0h | 1.30321 | 0.259 |
Var 12h I row2-row1 | 0.95921 | 0.856 |
Var 12h NI row2-row1 | 0.92139 | 0.906 |
Var 36h I row2-row1 | 0.90745 | 1 |
Var 36h NI row2-row1 | 1.14657 | 1 |
Var 60h I row2-row1 | 0.88466 | 0.832 |
Var 60h NI row2-row1 | 1.05646 | 1 |
Time course 0hI-0hNI | 1.09388 | 0.662 |
Time course 12hI-12hNI | 0.98312 | 0.909 |
Time course 36hI-36hNI | 0.91129 | 0.096 |
Time course 60hI-60hNI | 0.28012 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06165 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 1.71773 | 1 |
transgenic ySAMdc/azygous control (red) | 1.50525 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.75397 | 0.14 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 3.25925 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.05267 | 0.307 |
Manapal/WT (break) | 1.99604 | 0.381 |
Manapal/WT (red) | 2.58172 | 0.222 |
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