Expression of 1-1-2.2.8.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.229390.348
27DAP/17DAP0.770670.341
39DAP/27DAP0.872760.544
41DAP/39DAP0.920330.666
42DAP/41DAP0.975781
43DAP/42DAP1.110051
47DAP/43DAP1.091860.999
52DAP/47DAP0.992350.92
57DAP/52DAP0.939970.853

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.962390.344
17DAP/reference1.049390.117
27DAP/reference0.977650.497
39DAP/reference0.964020.487
41DAP/reference0.981640.814
42DAP/reference0.957890.151
43DAP/reference0.992890.82
47DAP/reference0.91660.019
52DAP/reference0.922860.244
57DAP/reference0.955260.308

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.510340.046
27DAP/17DAP0.781270.121
39DAP/27DAP0.599110.029
41DAP/39DAP1.135040.183
42DAP/41DAP0.908160.267
43DAP/42DAP0.806450.042
47DAP/43DAP0.917330.554
52DAP/47DAP0.989790.93
57DAP/52DAP0.908090.321
57DAP/7DAP0.987141

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937230.115
17DAP/reference0.96170.295
27DAP/reference0.979320.101
39DAP/reference0.915860.025
41DAP/reference0.908980.062
42DAP/reference0.753910.01
43DAP/reference0.899640.025
47DAP/reference0.948880.168
52DAP/reference0.899450.028
57DAP/reference0.994520.648

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.042790.491
17DAP/reference1.073960.415
27DAP/reference0.945840.327
39DAP/reference0.997480.661
41DAP/reference0.836790.03
42DAP/reference0.911810.108
43DAP/reference1.054010.617
47DAP/reference0.970890.201
52DAP/reference1.000920.761
57DAP/reference1.051630.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.002421
17DAP/reference0.987610.763
27DAP/reference0.986480.516
39DAP/reference1.003781
41DAP/reference0.937390.107
42DAP/reference0.894180.071
43DAP/reference0.847030.165
47DAP/reference0.982090.538
52DAP/reference0.981710.704
57DAP/reference0.779110.038

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.128350.878
26DAP/20DAP1.098460.785
34DAP/26DAP0.936240.803
51DAP/34DAP0.632130.058
52DAP/51DAP0.949491
53DAP/52DAP0.865750.265
55DAP/53DAP1.139680.589
57DAP/55DAP1.0930.745
62DAP/57DAP1.046310.723
68DAP/62DAP1.008920.984
68DAP/14DAP0.945381

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.709290.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.534540.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.474450.224
Mature Eggplant/Ripe Tomato4.236511

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.06188
1-1-2/M820.755830.804
12-2/M82N/AN/A
12-4/M820.76867
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.850020.487
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.772020.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.11860.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.68698
IL7-3/WTpooled1.1905
IL12-4/WTpooled0.957971
IL1-4/WTpooled1.029371
WT/WTpooled0.985021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.11970.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.991311
DC3000/delta hrp 6h1.563490.978
DC3000/delta hrp 12h1.005931
DC3000/delta hrp 24h1.133160.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.681670.028
DC3000 delta B/DC3000 delta AB0.484990.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.286150.254
Exp 36h1.281050.371
Exp 60h1.834020.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020081
Var 0h0.939361
Var 12h I row2-row10.932920.353
Var 12h NI row2-row10.972250.713
Var 36h I row2-row10.837080.805
Var 36h NI row2-row10.98130.706
Var 60h I row2-row11.458860.562
Var 60h NI row2-row10.985671
Time course 0hI-0hNI0.998431
Time course 12hI-12hNI1.063250.572
Time course 36hI-36hNI0.991050.665
Time course 60hI-60hNI0.443440.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.307990.297
transgenic ySAMdc/azygous control (breaker)0.756340.15
transgenic ySAMdc/azygous control (red)0.904231

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.982260.295

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.833140.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.291820.14
Manapal/WT (break)1.644880.13
Manapal/WT (red)1.16671