Expression of 1-1-2.2.8.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22939 | 0.348 |
27DAP/17DAP | 0.77067 | 0.341 |
39DAP/27DAP | 0.87276 | 0.544 |
41DAP/39DAP | 0.92033 | 0.666 |
42DAP/41DAP | 0.97578 | 1 |
43DAP/42DAP | 1.11005 | 1 |
47DAP/43DAP | 1.09186 | 0.999 |
52DAP/47DAP | 0.99235 | 0.92 |
57DAP/52DAP | 0.93997 | 0.853 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96239 | 0.344 |
17DAP/reference | 1.04939 | 0.117 |
27DAP/reference | 0.97765 | 0.497 |
39DAP/reference | 0.96402 | 0.487 |
41DAP/reference | 0.98164 | 0.814 |
42DAP/reference | 0.95789 | 0.151 |
43DAP/reference | 0.99289 | 0.82 |
47DAP/reference | 0.9166 | 0.019 |
52DAP/reference | 0.92286 | 0.244 |
57DAP/reference | 0.95526 | 0.308 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.51034 | 0.046 |
27DAP/17DAP | 0.78127 | 0.121 |
39DAP/27DAP | 0.59911 | 0.029 |
41DAP/39DAP | 1.13504 | 0.183 |
42DAP/41DAP | 0.90816 | 0.267 |
43DAP/42DAP | 0.80645 | 0.042 |
47DAP/43DAP | 0.91733 | 0.554 |
52DAP/47DAP | 0.98979 | 0.93 |
57DAP/52DAP | 0.90809 | 0.321 |
57DAP/7DAP | 0.98714 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93723 | 0.115 |
17DAP/reference | 0.9617 | 0.295 |
27DAP/reference | 0.97932 | 0.101 |
39DAP/reference | 0.91586 | 0.025 |
41DAP/reference | 0.90898 | 0.062 |
42DAP/reference | 0.75391 | 0.01 |
43DAP/reference | 0.89964 | 0.025 |
47DAP/reference | 0.94888 | 0.168 |
52DAP/reference | 0.89945 | 0.028 |
57DAP/reference | 0.99452 | 0.648 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04279 | 0.491 |
17DAP/reference | 1.07396 | 0.415 |
27DAP/reference | 0.94584 | 0.327 |
39DAP/reference | 0.99748 | 0.661 |
41DAP/reference | 0.83679 | 0.03 |
42DAP/reference | 0.91181 | 0.108 |
43DAP/reference | 1.05401 | 0.617 |
47DAP/reference | 0.97089 | 0.201 |
52DAP/reference | 1.00092 | 0.761 |
57DAP/reference | 1.05163 | 0.269 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00242 | 1 |
17DAP/reference | 0.98761 | 0.763 |
27DAP/reference | 0.98648 | 0.516 |
39DAP/reference | 1.00378 | 1 |
41DAP/reference | 0.93739 | 0.107 |
42DAP/reference | 0.89418 | 0.071 |
43DAP/reference | 0.84703 | 0.165 |
47DAP/reference | 0.98209 | 0.538 |
52DAP/reference | 0.98171 | 0.704 |
57DAP/reference | 0.77911 | 0.038 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12835 | 0.878 |
26DAP/20DAP | 1.09846 | 0.785 |
34DAP/26DAP | 0.93624 | 0.803 |
51DAP/34DAP | 0.63213 | 0.058 |
52DAP/51DAP | 0.94949 | 1 |
53DAP/52DAP | 0.86575 | 0.265 |
55DAP/53DAP | 1.13968 | 0.589 |
57DAP/55DAP | 1.093 | 0.745 |
62DAP/57DAP | 1.04631 | 0.723 |
68DAP/62DAP | 1.00892 | 0.984 |
68DAP/14DAP | 0.94538 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.70929 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.53454 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.47445 | 0.224 |
Mature Eggplant/Ripe Tomato | 4.23651 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06188 | |
1-1-2/M82 | 0.75583 | 0.804 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.76867 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.85002 | 0.487 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.77202 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.1186 | 0.277 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.68698 | |
IL7-3/WTpooled | 1.1905 | |
IL12-4/WTpooled | 0.95797 | 1 |
IL1-4/WTpooled | 1.02937 | 1 |
WT/WTpooled | 0.98502 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1197 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99131 | 1 |
DC3000/delta hrp 6h | 1.56349 | 0.978 |
DC3000/delta hrp 12h | 1.00593 | 1 |
DC3000/delta hrp 24h | 1.13316 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.68167 | 0.028 |
DC3000 delta B/DC3000 delta AB | 0.48499 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.28615 | 0.254 |
Exp 36h | 1.28105 | 0.371 |
Exp 60h | 1.83402 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02008 | 1 |
Var 0h | 0.93936 | 1 |
Var 12h I row2-row1 | 0.93292 | 0.353 |
Var 12h NI row2-row1 | 0.97225 | 0.713 |
Var 36h I row2-row1 | 0.83708 | 0.805 |
Var 36h NI row2-row1 | 0.9813 | 0.706 |
Var 60h I row2-row1 | 1.45886 | 0.562 |
Var 60h NI row2-row1 | 0.98567 | 1 |
Time course 0hI-0hNI | 0.99843 | 1 |
Time course 12hI-12hNI | 1.06325 | 0.572 |
Time course 36hI-36hNI | 0.99105 | 0.665 |
Time course 60hI-60hNI | 0.44344 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.30799 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 0.75634 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.90423 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98226 | 0.295 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.83314 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.29182 | 0.14 |
Manapal/WT (break) | 1.64488 | 0.13 |
Manapal/WT (red) | 1.1667 | 1 |
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