Expression of 1-1-2.2.9.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90794 | 0.532 |
27DAP/17DAP | 0.90471 | 0.863 |
39DAP/27DAP | 1.6671 | 0.481 |
41DAP/39DAP | 1.08469 | 0.918 |
42DAP/41DAP | 1.02061 | 1 |
43DAP/42DAP | 0.92651 | 0.799 |
47DAP/43DAP | 0.92817 | 0.724 |
52DAP/47DAP | 1.1517 | 0.769 |
57DAP/52DAP | 0.94041 | 0.926 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10983 | 0.587 |
17DAP/reference | 1.23282 | 0.038 |
27DAP/reference | 1.69403 | 0.014 |
39DAP/reference | 1.5259 | 0.047 |
41DAP/reference | 1.65789 | 0.015 |
42DAP/reference | 0.97383 | 0.295 |
43DAP/reference | 1.20957 | 0.009 |
47DAP/reference | 1.07512 | 0.509 |
52DAP/reference | 1.1295 | 0.695 |
57DAP/reference | 1.29706 | 0.153 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05042 | 0.947 |
27DAP/17DAP | 0.9502 | 0.724 |
39DAP/27DAP | 0.98378 | 0.925 |
41DAP/39DAP | 0.98941 | 1 |
42DAP/41DAP | 1.00226 | 0.869 |
43DAP/42DAP | 1.04905 | 0.585 |
47DAP/43DAP | 0.89849 | 0.516 |
52DAP/47DAP | 1.20772 | 0.408 |
57DAP/52DAP | 1.1253 | 0.552 |
57DAP/7DAP | 0.79189 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93802 | 0.183 |
17DAP/reference | 1.01214 | 1 |
27DAP/reference | 1.31139 | 0.012 |
39DAP/reference | 0.80127 | 0.012 |
41DAP/reference | 1.05627 | 1 |
42DAP/reference | 1.02753 | 1 |
43DAP/reference | 1.13777 | 0.167 |
47DAP/reference | 0.9816 | 0.671 |
52DAP/reference | 1.18015 | 0.048 |
57DAP/reference | 1.17176 | 0.108 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19702 | 0.125 |
17DAP/reference | 1.52128 | 0.013 |
27DAP/reference | 1.32221 | 0.146 |
39DAP/reference | 0.91447 | 0.274 |
41DAP/reference | 0.97708 | 0.451 |
42DAP/reference | 1.67684 | 0.007 |
43DAP/reference | 1.89032 | 0.009 |
47DAP/reference | 1.42147 | 0.008 |
52DAP/reference | 1.27019 | 0.036 |
57DAP/reference | 1.66834 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02015 | 0.793 |
17DAP/reference | 1.02624 | 0.842 |
27DAP/reference | 1.30415 | 0.018 |
39DAP/reference | 1.143 | 0.14 |
41DAP/reference | 1.14345 | 0.145 |
42DAP/reference | 1.14007 | 0.391 |
43DAP/reference | 1.31247 | 0.128 |
47DAP/reference | 1.19694 | 0.239 |
52DAP/reference | 1.3569 | 0.071 |
57DAP/reference | 1.16844 | 0.291 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0301 | 1 |
26DAP/20DAP | 1.54352 | 0.608 |
34DAP/26DAP | 1.29142 | 1 |
51DAP/34DAP | 1.03647 | 1 |
52DAP/51DAP | 1.90719 | 0.09 |
53DAP/52DAP | 0.93227 | 0.758 |
55DAP/53DAP | 1.17908 | 0.21 |
57DAP/55DAP | 0.72005 | 0.044 |
62DAP/57DAP | 1.03229 | 1 |
68DAP/62DAP | 1.3414 | 0.754 |
68DAP/14DAP | 4.83667 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.61631 | 0.03 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.76838 | 0.287 |
Immature Eggplant/Mature Eggplant | 109.14 | |
Ripe Pepper/Ripe Tomato | 1.33928 | |
Mature Eggplant/Ripe Tomato | 0.21573 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00448 | 1 |
1-1-2/M82 | 0.93215 | 1 |
12-2/M82 | 1.10714 | |
12-4/M82 | 0.92976 | 0.619 |
1-3/M82 | 1.06208 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.26042 | |
3-2/M82 | 0.91156 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.10791 | 0.853 |
4-3-2/M82 | 1.29928 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.82148 | 0.49 |
6-2/M82 | 1.91559 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.17063 | 0.302 |
9-3-2/M82 | 1.35894 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.06338 | 1 |
IL2-6/WTpooled | 1.09371 | 0.584 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.04912 | 1 |
IL12-4/WTpooled | 1.07901 | 0.785 |
IL1-4/WTpooled | 0.74434 | 0.834 |
WT/WTpooled | 0.97534 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.60844 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00801 | 1 |
DC3000/delta hrp 6h | 1.50362 | 0.449 |
DC3000/delta hrp 12h | 1.09502 | 1 |
DC3000/delta hrp 24h | 1.01698 | 0.69 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08821 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.30545 | 0.208 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.18586 | 1 |
Exp 36h | 1.35358 | 0.693 |
Exp 60h | 1.31249 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03437 | 1 |
Var 0h | 0.46668 | 0.933 |
Var 12h I row2-row1 | 1.01999 | 1 |
Var 12h NI row2-row1 | 1.6509 | 0.34 |
Var 36h I row2-row1 | 1.06139 | 1 |
Var 36h NI row2-row1 | 0.77239 | 0.469 |
Var 60h I row2-row1 | 0.85955 | 0.832 |
Var 60h NI row2-row1 | 0.66257 | 0.318 |
Time course 0hI-0hNI | 1.12107 | 0.262 |
Time course 12hI-12hNI | 1.81378 | 0.005 |
Time course 36hI-36hNI | 2.91371 | 0.005 |
Time course 60hI-60hNI | 2.90297 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.9928 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 0.14802 | 0.125 |
transgenic ySAMdc/azygous control (red) | 3.1878 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05408 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.40827 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.71189 | 0.105 |
Manapal/WT (break) | 7.20696 | 0.183 |
Manapal/WT (red) | 1.97711 | 0.164 |
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