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Expression of 1-1-2.2.9.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.907940.532
27DAP/17DAP0.904710.863
39DAP/27DAP1.66710.481
41DAP/39DAP1.084690.918
42DAP/41DAP1.020611
43DAP/42DAP0.926510.799
47DAP/43DAP0.928170.724
52DAP/47DAP1.15170.769
57DAP/52DAP0.940410.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.109830.587
17DAP/reference1.232820.038
27DAP/reference1.694030.014
39DAP/reference1.52590.047
41DAP/reference1.657890.015
42DAP/reference0.973830.295
43DAP/reference1.209570.009
47DAP/reference1.075120.509
52DAP/reference1.12950.695
57DAP/reference1.297060.153

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.050420.947
27DAP/17DAP0.95020.724
39DAP/27DAP0.983780.925
41DAP/39DAP0.989411
42DAP/41DAP1.002260.869
43DAP/42DAP1.049050.585
47DAP/43DAP0.898490.516
52DAP/47DAP1.207720.408
57DAP/52DAP1.12530.552
57DAP/7DAP0.791891

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.938020.183
17DAP/reference1.012141
27DAP/reference1.311390.012
39DAP/reference0.801270.012
41DAP/reference1.056271
42DAP/reference1.027531
43DAP/reference1.137770.167
47DAP/reference0.98160.671
52DAP/reference1.180150.048
57DAP/reference1.171760.108

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.197020.125
17DAP/reference1.521280.013
27DAP/reference1.322210.146
39DAP/reference0.914470.274
41DAP/reference0.977080.451
42DAP/reference1.676840.007
43DAP/reference1.890320.009
47DAP/reference1.421470.008
52DAP/reference1.270190.036
57DAP/reference1.668340.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.020150.793
17DAP/reference1.026240.842
27DAP/reference1.304150.018
39DAP/reference1.1430.14
41DAP/reference1.143450.145
42DAP/reference1.140070.391
43DAP/reference1.312470.128
47DAP/reference1.196940.239
52DAP/reference1.35690.071
57DAP/reference1.168440.291

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.03011
26DAP/20DAP1.543520.608
34DAP/26DAP1.291421
51DAP/34DAP1.036471
52DAP/51DAP1.907190.09
53DAP/52DAP0.932270.758
55DAP/53DAP1.179080.21
57DAP/55DAP0.720050.044
62DAP/57DAP1.032291
68DAP/62DAP1.34140.754
68DAP/14DAP4.83667N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.616310.03

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.768380.287
Immature Eggplant/Mature Eggplant109.14N/A
Ripe Pepper/Ripe Tomato1.33928N/A
Mature Eggplant/Ripe Tomato0.215730.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.004481
1-1-2/M820.932151
12-2/M821.10714N/A
12-4/M820.929760.619
1-3/M821.06208N/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.26042N/A
3-2/M820.91156N/A
4-1-1/M82N/AN/A
4-1/M821.107910.853
4-3-2/M821.299281
4-3/M82N/AN/A
5-3/M820.821480.49
6-2/M821.91559N/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.170630.302
9-3-2/M821.358941

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.063381
IL2-6/WTpooled1.093710.584
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.049121
IL12-4/WTpooled1.079010.785
IL1-4/WTpooled0.744340.834
WT/WTpooled0.975341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.608440.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.008011
DC3000/delta hrp 6h1.503620.449
DC3000/delta hrp 12h1.095021
DC3000/delta hrp 24h1.016980.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.088210.333
DC3000 delta B/DC3000 delta AB1.305450.208

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.185861
Exp 36h1.353580.693
Exp 60h1.312490.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.034371
Var 0h0.466680.933
Var 12h I row2-row11.019991
Var 12h NI row2-row11.65090.34
Var 36h I row2-row11.061391
Var 36h NI row2-row10.772390.469
Var 60h I row2-row10.859550.832
Var 60h NI row2-row10.662570.318
Time course 0hI-0hNI1.121070.262
Time course 12hI-12hNI1.813780.005
Time course 36hI-36hNI2.913710.005
Time course 60hI-60hNI2.902970.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)2.99280.511
transgenic ySAMdc/azygous control (breaker)0.148020.125
transgenic ySAMdc/azygous control (red)3.18780.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.054080.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.408270.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.711890.105
Manapal/WT (break)7.206960.183
Manapal/WT (red)1.977110.164