Expression of 1-1-2.2.9.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.999360.927
27DAP/17DAP0.802470.532
39DAP/27DAP1.305990.299
41DAP/39DAP0.699590.085
42DAP/41DAP1.104850.933
43DAP/42DAP1.15460.94
47DAP/43DAP0.778450.334
52DAP/47DAP0.940620.789
57DAP/52DAP1.220690.859

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.056270.662
17DAP/reference0.916520.18
27DAP/reference0.93630.444
39DAP/reference0.921950.333
41DAP/reference0.87050.154
42DAP/reference0.914220.095
43DAP/reference1.061050.899
47DAP/reference0.872560.038
52DAP/reference1.140630.498
57DAP/reference1.027771

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.087750.547
27DAP/17DAP0.884860.312
39DAP/27DAP0.88760.132
41DAP/39DAP1.05630.853
42DAP/41DAP0.987660.803
43DAP/42DAP0.841090.039
47DAP/43DAP1.050380.844
52DAP/47DAP0.966820.9
57DAP/52DAP0.892760.531
57DAP/7DAP0.67084

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.855430.08
17DAP/reference0.757220.021
27DAP/reference0.797810.01
39DAP/reference0.745250.012
41DAP/reference0.8680.153
42DAP/reference0.630670.01
43DAP/reference0.708890.033
47DAP/reference0.827830.293
52DAP/reference0.783440.019
57DAP/reference0.716620.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992620.848
17DAP/reference0.996340.766
27DAP/reference1.037131
39DAP/reference1.030331
41DAP/reference0.979630.505
42DAP/reference0.97650.433
43DAP/reference0.874270.111
47DAP/reference0.922430.105
52DAP/reference0.882840.302
57DAP/reference0.850520.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937320.335
17DAP/reference0.957440.477
27DAP/reference0.825320.05
39DAP/reference0.815930.076
41DAP/reference0.886480.119
42DAP/reference0.785890.036
43DAP/reference0.743680.035
47DAP/reference0.979710.558
52DAP/reference1.049980.946
57DAP/reference0.902040.165

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.046771
26DAP/20DAP1.624510.212
34DAP/26DAP1.031661
51DAP/34DAP0.677250.121
52DAP/51DAP0.699691
53DAP/52DAP0.680460.254
55DAP/53DAP0.965560.796
57DAP/55DAP1.162670.87
62DAP/57DAP1.146920.515
68DAP/62DAP0.941140.81
68DAP/14DAP0.853691

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.240620.081

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.384270.025
Immature Eggplant/Mature Eggplant0.481820.176
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.9822
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.63163
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.87493
7-2/M82N/AN/A
9-3-2/M821.271151

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.798370.321
IL2-6/WTpooled1.160710.584
IL7-5/WTpooled1.253280.792
IL7-3/WTpooled0.77430.298
IL12-4/WTpooled0.971021
IL1-4/WTpooled0.855550.699
WT/WTpooled1.023331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.045050.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.981551
DC3000/delta hrp 6h1.041211
DC3000/delta hrp 12h0.82781
DC3000/delta hrp 24h2.013690.051

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.714940.025
DC3000 delta B/DC3000 delta AB1.034870.748

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.784170.265
Exp 36h0.772230.661
Exp 60h0.645150.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025511
Var 0h0.521380.782
Var 12h I row2-row10.993161
Var 12h NI row2-row11.055031
Var 36h I row2-row10.883561
Var 36h NI row2-row10.854710.469
Var 60h I row2-row11.048531
Var 60h NI row2-row10.828890.306
Time course 0hI-0hNI0.891810.111
Time course 12hI-12hNI0.987020.953
Time course 36hI-36hNI1.025930.841
Time course 60hI-60hNI0.740260.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.004521
transgenic ySAMdc/azygous control (breaker)1.140140.178
transgenic ySAMdc/azygous control (red)1.134310.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.081530.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.740440.172
Manapal/WT (break)0.848370.333
Manapal/WT (red)N/AN/A