Expression of 1-1-2.2.9.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99936 | 0.927 |
27DAP/17DAP | 0.80247 | 0.532 |
39DAP/27DAP | 1.30599 | 0.299 |
41DAP/39DAP | 0.69959 | 0.085 |
42DAP/41DAP | 1.10485 | 0.933 |
43DAP/42DAP | 1.1546 | 0.94 |
47DAP/43DAP | 0.77845 | 0.334 |
52DAP/47DAP | 0.94062 | 0.789 |
57DAP/52DAP | 1.22069 | 0.859 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05627 | 0.662 |
17DAP/reference | 0.91652 | 0.18 |
27DAP/reference | 0.9363 | 0.444 |
39DAP/reference | 0.92195 | 0.333 |
41DAP/reference | 0.8705 | 0.154 |
42DAP/reference | 0.91422 | 0.095 |
43DAP/reference | 1.06105 | 0.899 |
47DAP/reference | 0.87256 | 0.038 |
52DAP/reference | 1.14063 | 0.498 |
57DAP/reference | 1.02777 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08775 | 0.547 |
27DAP/17DAP | 0.88486 | 0.312 |
39DAP/27DAP | 0.8876 | 0.132 |
41DAP/39DAP | 1.0563 | 0.853 |
42DAP/41DAP | 0.98766 | 0.803 |
43DAP/42DAP | 0.84109 | 0.039 |
47DAP/43DAP | 1.05038 | 0.844 |
52DAP/47DAP | 0.96682 | 0.9 |
57DAP/52DAP | 0.89276 | 0.531 |
57DAP/7DAP | 0.67084 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85543 | 0.08 |
17DAP/reference | 0.75722 | 0.021 |
27DAP/reference | 0.79781 | 0.01 |
39DAP/reference | 0.74525 | 0.012 |
41DAP/reference | 0.868 | 0.153 |
42DAP/reference | 0.63067 | 0.01 |
43DAP/reference | 0.70889 | 0.033 |
47DAP/reference | 0.82783 | 0.293 |
52DAP/reference | 0.78344 | 0.019 |
57DAP/reference | 0.71662 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99262 | 0.848 |
17DAP/reference | 0.99634 | 0.766 |
27DAP/reference | 1.03713 | 1 |
39DAP/reference | 1.03033 | 1 |
41DAP/reference | 0.97963 | 0.505 |
42DAP/reference | 0.9765 | 0.433 |
43DAP/reference | 0.87427 | 0.111 |
47DAP/reference | 0.92243 | 0.105 |
52DAP/reference | 0.88284 | 0.302 |
57DAP/reference | 0.85052 | 0.135 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93732 | 0.335 |
17DAP/reference | 0.95744 | 0.477 |
27DAP/reference | 0.82532 | 0.05 |
39DAP/reference | 0.81593 | 0.076 |
41DAP/reference | 0.88648 | 0.119 |
42DAP/reference | 0.78589 | 0.036 |
43DAP/reference | 0.74368 | 0.035 |
47DAP/reference | 0.97971 | 0.558 |
52DAP/reference | 1.04998 | 0.946 |
57DAP/reference | 0.90204 | 0.165 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04677 | 1 |
26DAP/20DAP | 1.62451 | 0.212 |
34DAP/26DAP | 1.03166 | 1 |
51DAP/34DAP | 0.67725 | 0.121 |
52DAP/51DAP | 0.69969 | 1 |
53DAP/52DAP | 0.68046 | 0.254 |
55DAP/53DAP | 0.96556 | 0.796 |
57DAP/55DAP | 1.16267 | 0.87 |
62DAP/57DAP | 1.14692 | 0.515 |
68DAP/62DAP | 0.94114 | 0.81 |
68DAP/14DAP | 0.85369 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.24062 | 0.081 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.38427 | 0.025 |
Immature Eggplant/Mature Eggplant | 0.48182 | 0.176 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.9822 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.63163 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.87493 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.27115 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.79837 | 0.321 |
IL2-6/WTpooled | 1.16071 | 0.584 |
IL7-5/WTpooled | 1.25328 | 0.792 |
IL7-3/WTpooled | 0.7743 | 0.298 |
IL12-4/WTpooled | 0.97102 | 1 |
IL1-4/WTpooled | 0.85555 | 0.699 |
WT/WTpooled | 1.02333 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04505 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98155 | 1 |
DC3000/delta hrp 6h | 1.04121 | 1 |
DC3000/delta hrp 12h | 0.8278 | 1 |
DC3000/delta hrp 24h | 2.01369 | 0.051 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.71494 | 0.025 |
DC3000 delta B/DC3000 delta AB | 1.03487 | 0.748 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.78417 | 0.265 |
Exp 36h | 0.77223 | 0.661 |
Exp 60h | 0.64515 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02551 | 1 |
Var 0h | 0.52138 | 0.782 |
Var 12h I row2-row1 | 0.99316 | 1 |
Var 12h NI row2-row1 | 1.05503 | 1 |
Var 36h I row2-row1 | 0.88356 | 1 |
Var 36h NI row2-row1 | 0.85471 | 0.469 |
Var 60h I row2-row1 | 1.04853 | 1 |
Var 60h NI row2-row1 | 0.82889 | 0.306 |
Time course 0hI-0hNI | 0.89181 | 0.111 |
Time course 12hI-12hNI | 0.98702 | 0.953 |
Time course 36hI-36hNI | 1.02593 | 0.841 |
Time course 60hI-60hNI | 0.74026 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00452 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.14014 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.13431 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08153 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.74044 | 0.172 |
Manapal/WT (break) | 0.84837 | 0.333 |
Manapal/WT (red) | N/A | N/A |
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