Expression of 1-1-2.3.1.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.915650.496
27DAP/17DAP1.049131
39DAP/27DAP1.965060.101
41DAP/39DAP0.561670.045
42DAP/41DAP1.268960.792
43DAP/42DAP1.140871
47DAP/43DAP0.901430.663
52DAP/47DAP0.870450.633
57DAP/52DAP1.197660.859

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.291710.033
17DAP/reference1.16570.306
27DAP/reference1.196240.075
39DAP/reference1.204720.174
41DAP/reference1.247560.073
42DAP/reference1.605840.001
43DAP/reference1.291070.031
47DAP/reference1.500880.001
52DAP/reference1.195190.108
57DAP/reference1.209350.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.065490.812
27DAP/17DAP1.050230.9
39DAP/27DAP0.838520.108
41DAP/39DAP1.36510.682
42DAP/41DAP1.026621
43DAP/42DAP0.775940.022
47DAP/43DAP0.993870.983
52DAP/47DAP0.834470.085
57DAP/52DAP0.91330.445
57DAP/7DAP0.893391

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.986090.024
17DAP/reference1.430420.011
27DAP/reference1.73650.008
39DAP/reference1.667560.005
41DAP/reference1.533810.009
42DAP/reference1.600950.009
43DAP/reference1.483480.006
47DAP/reference1.52790.014
52DAP/reference1.616710.007
57DAP/reference1.562540.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.198370.589
17DAP/reference1.408510.058
27DAP/reference1.885580.014
39DAP/reference1.618510.225
41DAP/reference1.533880.005
42DAP/reference1.736090.008
43DAP/reference1.033980.633
47DAP/reference1.776620.008
52DAP/reference1.082510.124
57DAP/reference1.14110.672

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.601420.019
17DAP/reference1.195840.343
27DAP/reference1.51450.019
39DAP/reference1.79890.007
41DAP/reference1.222990.674
42DAP/reference1.779420.007
43DAP/reference1.955550.014
47DAP/reference1.209390.239
52DAP/reference1.528870.047
57DAP/reference2.091190.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.12490.966
26DAP/20DAP4.636510.269
34DAP/26DAP2.515160.542
51DAP/34DAP0.735470.174
52DAP/51DAP0.555151
53DAP/52DAP0.822320.386
55DAP/53DAP0.652660.021
57DAP/55DAP3.011770.324
62DAP/57DAP1.103591
68DAP/62DAP1.016780.914
68DAP/14DAP1.007571

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.426170.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.129510.176
Mature Green Tomato/Ripe Tomato1.544870.064
Immature Eggplant/Mature Eggplant1.164080.096
Ripe Pepper/Ripe Tomato0.713460.224
Mature Eggplant/Ripe Tomato1.23081

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.846930.736
1-1-2/M821.208721
12-2/M820.847470.955
12-4/M821.1881
1-3/M821.814040.248
2-1-1/M820.879870.784
2-1/M820.806340.345
2-6/M821.095690.374
3-2/M82N/AN/A
4-1-1/M821.140821
4-1/M822.298051
4-3-2/M821.44316
4-3/M821.324240.268
5-3/M821.113121
6-2/M821.456110.235
6-3/M821.030291
7-1/M821.077961
7-2/M821.44110.385
9-3-2/M821.215221

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.82323
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.65464
IL12-4/WTpooled0.99269
IL1-4/WTpooled1.76954
WT/WTpooled0.881731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.09051

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.149980.846
DC3000/delta hrp 6h0.960960.95
DC3000/delta hrp 12h1.037911
DC3000/delta hrp 24h1.240680.074

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.093080.384
DC3000 delta B/DC3000 delta AB1.180290.217

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.90161
Exp 36h1.25011
Exp 60h1.030811

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018331
Var 0h1.05241
Var 12h I row2-row11.01261
Var 12h NI row2-row11.238780.649
Var 36h I row2-row11.481050.489
Var 36h NI row2-row11.559621
Var 60h I row2-row10.957660.952
Var 60h NI row2-row10.745570.298
Time course 0hI-0hNI0.877530.256
Time course 12hI-12hNI1.059760.544
Time course 36hI-36hNI1.422770.114
Time course 60hI-60hNI1.243380.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.030760.699
transgenic ySAMdc/azygous control (breaker)1.200340.178
transgenic ySAMdc/azygous control (red)1.094350.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.471390.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.032451

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.723790.172
Manapal/WT (break)0.908251
Manapal/WT (red)0.986170.863