Expression of 1-1-2.3.1.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.086460.575
27DAP/17DAP1.026490.922
39DAP/27DAP0.924620.549
41DAP/39DAP1.106390.638
42DAP/41DAP1.07640.912
43DAP/42DAP1.012451
47DAP/43DAP0.948170.788
52DAP/47DAP0.881420.67
57DAP/52DAP1.072760.941

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.902640.269
17DAP/reference0.970010.536
27DAP/reference1.012030.934
39DAP/reference0.958850.391
41DAP/reference0.84940.154
42DAP/reference1.003241
43DAP/reference0.94110.36
47DAP/reference1.015350.794
52DAP/reference0.997230.749
57DAP/reference1.007551

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.013580.99
27DAP/17DAP0.997550.969
39DAP/27DAP1.006060.862
41DAP/39DAP1.013140.88
42DAP/41DAP1.001510.936
43DAP/42DAP1.001420.83
47DAP/43DAP1.072260.837
52DAP/47DAP1.016110.933
57DAP/52DAP0.951950.405
57DAP/7DAP0.948951

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.168850.209
17DAP/reference1.283380.011
27DAP/reference1.009830.551
39DAP/reference1.426150.006
41DAP/reference1.350430.02
42DAP/reference1.189680.046
43DAP/reference1.299810.026
47DAP/reference1.150170.36
52DAP/reference1.110620.092
57DAP/reference1.067960.268

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.922790.268
17DAP/reference0.962760.51
27DAP/reference0.976440.501
39DAP/reference0.995680.642
41DAP/reference1.001490.749
42DAP/reference1.006511
43DAP/reference0.860190.051
47DAP/reference0.952710.099
52DAP/reference1.031490.596
57DAP/reference0.924190.208

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.153830.122
17DAP/reference1.044090.488
27DAP/reference1.05340.425
39DAP/reference1.014470.752
41DAP/reference1.112960.044
42DAP/reference1.210550.036
43DAP/reference1.361890.048
47DAP/reference0.991580.61
52DAP/reference1.002550.946
57DAP/reference1.13940.2

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.016310.966
26DAP/20DAP0.929561
34DAP/26DAP0.972250.961
51DAP/34DAP1.094650.719
52DAP/51DAP1.054590.662
53DAP/52DAP0.99110.96
55DAP/53DAP0.941770.604
57DAP/55DAP1.090880.898
62DAP/57DAP0.860620.007
68DAP/62DAP1.025951
68DAP/14DAP0.923631

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.090390.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.624030.165
Mature Green Tomato/Ripe Tomato1.281260.095
Immature Eggplant/Mature Eggplant0.963280.912
Ripe Pepper/Ripe Tomato3.573030.258
Mature Eggplant/Ripe Tomato1.82340.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.072910.877
1-1-2/M820.912711
12-2/M820.968390.955
12-4/M820.922771
1-3/M821.034471
2-1-1/M821.048920.764
2-1/M821.195671
2-6/M820.939891
3-2/M821.049220.967
4-1-1/M820.999211
4-1/M821.059491
4-3-2/M820.872420.698
4-3/M821.06451
5-3/M821.068481
6-2/M820.995641
6-3/M820.947310.916
7-1/M821.008721
7-2/M820.971090.578
9-3-2/M820.862980.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.77401
IL2-6/WTpooled1.376220.531
IL7-5/WTpooled2.3152
IL7-3/WTpooled1.015111
IL12-4/WTpooled0.857680.71
IL1-4/WTpooled1.137461
WT/WTpooled0.976861

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.959631

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.022940.921
DC3000/delta hrp 6h1.105911
DC3000/delta hrp 12h1.002981
DC3000/delta hrp 24h0.988691

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.981010.916

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.929231
Exp 36h1.115881
Exp 60h0.86420.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.968461
Var 0h0.810830.933
Var 12h I row2-row10.952650.856
Var 12h NI row2-row11.022051
Var 36h I row2-row10.9191
Var 36h NI row2-row11.340151
Var 60h I row2-row11.346971
Var 60h NI row2-row10.914640.866
Time course 0hI-0hNI0.939390.522
Time course 12hI-12hNI0.93360.324
Time course 36hI-36hNI0.861260.108
Time course 60hI-60hNI0.699040.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.166220.297
transgenic ySAMdc/azygous control (breaker)2.131370.166
transgenic ySAMdc/azygous control (red)1.075370.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.988190.263

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.557950.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.75270.172
Manapal/WT (break)1.021751
Manapal/WT (red)1.101331