Expression of 1-1-2.3.1.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08646 | 0.575 |
27DAP/17DAP | 1.02649 | 0.922 |
39DAP/27DAP | 0.92462 | 0.549 |
41DAP/39DAP | 1.10639 | 0.638 |
42DAP/41DAP | 1.0764 | 0.912 |
43DAP/42DAP | 1.01245 | 1 |
47DAP/43DAP | 0.94817 | 0.788 |
52DAP/47DAP | 0.88142 | 0.67 |
57DAP/52DAP | 1.07276 | 0.941 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90264 | 0.269 |
17DAP/reference | 0.97001 | 0.536 |
27DAP/reference | 1.01203 | 0.934 |
39DAP/reference | 0.95885 | 0.391 |
41DAP/reference | 0.8494 | 0.154 |
42DAP/reference | 1.00324 | 1 |
43DAP/reference | 0.9411 | 0.36 |
47DAP/reference | 1.01535 | 0.794 |
52DAP/reference | 0.99723 | 0.749 |
57DAP/reference | 1.00755 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01358 | 0.99 |
27DAP/17DAP | 0.99755 | 0.969 |
39DAP/27DAP | 1.00606 | 0.862 |
41DAP/39DAP | 1.01314 | 0.88 |
42DAP/41DAP | 1.00151 | 0.936 |
43DAP/42DAP | 1.00142 | 0.83 |
47DAP/43DAP | 1.07226 | 0.837 |
52DAP/47DAP | 1.01611 | 0.933 |
57DAP/52DAP | 0.95195 | 0.405 |
57DAP/7DAP | 0.94895 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16885 | 0.209 |
17DAP/reference | 1.28338 | 0.011 |
27DAP/reference | 1.00983 | 0.551 |
39DAP/reference | 1.42615 | 0.006 |
41DAP/reference | 1.35043 | 0.02 |
42DAP/reference | 1.18968 | 0.046 |
43DAP/reference | 1.29981 | 0.026 |
47DAP/reference | 1.15017 | 0.36 |
52DAP/reference | 1.11062 | 0.092 |
57DAP/reference | 1.06796 | 0.268 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92279 | 0.268 |
17DAP/reference | 0.96276 | 0.51 |
27DAP/reference | 0.97644 | 0.501 |
39DAP/reference | 0.99568 | 0.642 |
41DAP/reference | 1.00149 | 0.749 |
42DAP/reference | 1.00651 | 1 |
43DAP/reference | 0.86019 | 0.051 |
47DAP/reference | 0.95271 | 0.099 |
52DAP/reference | 1.03149 | 0.596 |
57DAP/reference | 0.92419 | 0.208 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15383 | 0.122 |
17DAP/reference | 1.04409 | 0.488 |
27DAP/reference | 1.0534 | 0.425 |
39DAP/reference | 1.01447 | 0.752 |
41DAP/reference | 1.11296 | 0.044 |
42DAP/reference | 1.21055 | 0.036 |
43DAP/reference | 1.36189 | 0.048 |
47DAP/reference | 0.99158 | 0.61 |
52DAP/reference | 1.00255 | 0.946 |
57DAP/reference | 1.1394 | 0.2 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01631 | 0.966 |
26DAP/20DAP | 0.92956 | 1 |
34DAP/26DAP | 0.97225 | 0.961 |
51DAP/34DAP | 1.09465 | 0.719 |
52DAP/51DAP | 1.05459 | 0.662 |
53DAP/52DAP | 0.9911 | 0.96 |
55DAP/53DAP | 0.94177 | 0.604 |
57DAP/55DAP | 1.09088 | 0.898 |
62DAP/57DAP | 0.86062 | 0.007 |
68DAP/62DAP | 1.02595 | 1 |
68DAP/14DAP | 0.92363 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.09039 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.62403 | 0.165 |
Mature Green Tomato/Ripe Tomato | 1.28126 | 0.095 |
Immature Eggplant/Mature Eggplant | 0.96328 | 0.912 |
Ripe Pepper/Ripe Tomato | 3.57303 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.8234 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07291 | 0.877 |
1-1-2/M82 | 0.91271 | 1 |
12-2/M82 | 0.96839 | 0.955 |
12-4/M82 | 0.92277 | 1 |
1-3/M82 | 1.03447 | 1 |
2-1-1/M82 | 1.04892 | 0.764 |
2-1/M82 | 1.19567 | 1 |
2-6/M82 | 0.93989 | 1 |
3-2/M82 | 1.04922 | 0.967 |
4-1-1/M82 | 0.99921 | 1 |
4-1/M82 | 1.05949 | 1 |
4-3-2/M82 | 0.87242 | 0.698 |
4-3/M82 | 1.0645 | 1 |
5-3/M82 | 1.06848 | 1 |
6-2/M82 | 0.99564 | 1 |
6-3/M82 | 0.94731 | 0.916 |
7-1/M82 | 1.00872 | 1 |
7-2/M82 | 0.97109 | 0.578 |
9-3-2/M82 | 0.86298 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.77401 | |
IL2-6/WTpooled | 1.37622 | 0.531 |
IL7-5/WTpooled | 2.3152 | |
IL7-3/WTpooled | 1.01511 | 1 |
IL12-4/WTpooled | 0.85768 | 0.71 |
IL1-4/WTpooled | 1.13746 | 1 |
WT/WTpooled | 0.97686 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95963 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02294 | 0.921 |
DC3000/delta hrp 6h | 1.10591 | 1 |
DC3000/delta hrp 12h | 1.00298 | 1 |
DC3000/delta hrp 24h | 0.98869 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.98101 | 0.916 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.92923 | 1 |
Exp 36h | 1.11588 | 1 |
Exp 60h | 0.8642 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96846 | 1 |
Var 0h | 0.81083 | 0.933 |
Var 12h I row2-row1 | 0.95265 | 0.856 |
Var 12h NI row2-row1 | 1.02205 | 1 |
Var 36h I row2-row1 | 0.919 | 1 |
Var 36h NI row2-row1 | 1.34015 | 1 |
Var 60h I row2-row1 | 1.34697 | 1 |
Var 60h NI row2-row1 | 0.91464 | 0.866 |
Time course 0hI-0hNI | 0.93939 | 0.522 |
Time course 12hI-12hNI | 0.9336 | 0.324 |
Time course 36hI-36hNI | 0.86126 | 0.108 |
Time course 60hI-60hNI | 0.69904 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.16622 | 0.297 |
transgenic ySAMdc/azygous control (breaker) | 2.13137 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.07537 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98819 | 0.263 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.55795 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.7527 | 0.172 |
Manapal/WT (break) | 1.02175 | 1 |
Manapal/WT (red) | 1.10133 | 1 |
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