Expression of 1-1-2.3.1.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.77902 | 0.033 |
27DAP/17DAP | 1.34458 | 0.624 |
39DAP/27DAP | 1.10931 | 0.974 |
41DAP/39DAP | 0.60227 | 0.062 |
42DAP/41DAP | 1.15501 | 0.938 |
43DAP/42DAP | 1.43737 | 0.204 |
47DAP/43DAP | 1.31824 | 0.253 |
52DAP/47DAP | 0.58619 | 0.066 |
57DAP/52DAP | 0.68895 | 0.462 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91805 | 0.177 |
17DAP/reference | 0.88877 | 0.18 |
27DAP/reference | 1.16268 | 0.061 |
39DAP/reference | 1.06741 | 0.136 |
41DAP/reference | 0.84224 | 0.039 |
42DAP/reference | 1.18866 | 0.003 |
43DAP/reference | 1.03888 | 0.758 |
47DAP/reference | 1.27542 | 0.003 |
52DAP/reference | 1.13181 | 0.388 |
57DAP/reference | 1.18672 | 0.023 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.95234 | 0.038 |
27DAP/17DAP | 0.93088 | 0.614 |
39DAP/27DAP | 0.82522 | 0.056 |
41DAP/39DAP | 1.0619 | 0.807 |
42DAP/41DAP | 0.97663 | 0.752 |
43DAP/42DAP | 0.97851 | 0.801 |
47DAP/43DAP | 1.00126 | 0.99 |
52DAP/47DAP | 0.90174 | 0.565 |
57DAP/52DAP | 0.80866 | 0.143 |
57DAP/7DAP | 1.25673 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04164 | 0.732 |
17DAP/reference | 1.0476 | 0.822 |
27DAP/reference | 1.13453 | 0.026 |
39DAP/reference | 1.62845 | 0.006 |
41DAP/reference | 1.0528 | 0.655 |
42DAP/reference | 1.3434 | 0.076 |
43DAP/reference | 1.34713 | 0.013 |
47DAP/reference | 1.66487 | 0.026 |
52DAP/reference | 1.35738 | 0.033 |
57DAP/reference | 1.64812 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83456 | 0.145 |
17DAP/reference | 1.02187 | 0.711 |
27DAP/reference | 1.08435 | 0.552 |
39DAP/reference | 1.36438 | 0.033 |
41DAP/reference | 1.12939 | 0.234 |
42DAP/reference | 0.97759 | 0.482 |
43DAP/reference | 0.93139 | 0.414 |
47DAP/reference | 1.03231 | 0.775 |
52DAP/reference | 1.13427 | 0.061 |
57DAP/reference | 0.90107 | 0.318 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04424 | 0.469 |
17DAP/reference | 1.07786 | 0.394 |
27DAP/reference | 1.21316 | 0.033 |
39DAP/reference | 1.22702 | 0.011 |
41DAP/reference | 1.2306 | 0.065 |
42DAP/reference | 1.51746 | 0.028 |
43DAP/reference | 1.8241 | 0.006 |
47DAP/reference | 2.40168 | 0.006 |
52DAP/reference | 1.79608 | 0.06 |
57DAP/reference | 2.09866 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1297 | 0.966 |
26DAP/20DAP | 1.21439 | 0.608 |
34DAP/26DAP | 1.17397 | 1 |
51DAP/34DAP | 1.79488 | 0.098 |
52DAP/51DAP | 1.09357 | 0.708 |
53DAP/52DAP | 1.006 | 0.983 |
55DAP/53DAP | 0.90696 | 0.604 |
57DAP/55DAP | 0.76599 | 0.056 |
62DAP/57DAP | 1.72299 | 0.006 |
68DAP/62DAP | 1.61984 | 0.31 |
68DAP/14DAP | 1.31411 | 0.265 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.3285 | 0.077 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.804 | 0.279 |
Mature Green Tomato/Ripe Tomato | 2.13244 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.31907 | |
Ripe Pepper/Ripe Tomato | 2.03665 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.45926 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.24856 | 0.536 |
1-1-2/M82 | 1.08275 | 1 |
12-2/M82 | 0.69492 | 0.727 |
12-4/M82 | 0.85709 | 0.619 |
1-3/M82 | 1.2419 | |
2-1-1/M82 | 0.98996 | 1 |
2-1/M82 | 0.47559 | |
2-6/M82 | 1.82126 | 0.405 |
3-2/M82 | 0.77586 | |
4-1-1/M82 | 1.39965 | 1 |
4-1/M82 | 0.55411 | |
4-3-2/M82 | 2.63823 | 0.284 |
4-3/M82 | 1.35845 | 1 |
5-3/M82 | 1.03167 | 1 |
6-2/M82 | 1.63761 | 1 |
6-3/M82 | 1.21946 | |
7-1/M82 | 1.13069 | |
7-2/M82 | 1.81154 | |
9-3-2/M82 | 1.77179 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75242 | 0.243 |
IL2-6/WTpooled | 1.68368 | 0.441 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.83014 | |
IL12-4/WTpooled | 0.86263 | |
IL1-4/WTpooled | 1.32306 | 1 |
WT/WTpooled | 1.01712 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.85045 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92409 | 1 |
DC3000/delta hrp 6h | 1.07339 | 0.857 |
DC3000/delta hrp 12h | 1.14065 | 1 |
DC3000/delta hrp 24h | 0.68097 | 0.038 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.63724 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.66167 | 0.032 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12144 | 1 |
Exp 36h | 0.65571 | 0.504 |
Exp 60h | 0.79675 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99636 | 1 |
Var 0h | 0.94774 | 0.457 |
Var 12h I row2-row1 | 0.89543 | 0.514 |
Var 12h NI row2-row1 | 1.05926 | 1 |
Var 36h I row2-row1 | 1.45685 | 0.742 |
Var 36h NI row2-row1 | 3.36415 | 1 |
Var 60h I row2-row1 | 0.93408 | 0.832 |
Var 60h NI row2-row1 | 1.01386 | 1 |
Time course 0hI-0hNI | 1.0434 | 0.852 |
Time course 12hI-12hNI | 0.94653 | 0.586 |
Time course 36hI-36hNI | 0.87247 | 0.071 |
Time course 60hI-60hNI | 0.32625 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97901 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.49614 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.51859 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9541 | 0.087 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.06281 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.28764 | 0.09 |
Manapal/WT (break) | 2.01332 | 0.14 |
Manapal/WT (red) | 3.2015 | 0.15 |
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