Expression of 1-1-2.3.1.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.779020.033
27DAP/17DAP1.344580.624
39DAP/27DAP1.109310.974
41DAP/39DAP0.602270.062
42DAP/41DAP1.155010.938
43DAP/42DAP1.437370.204
47DAP/43DAP1.318240.253
52DAP/47DAP0.586190.066
57DAP/52DAP0.688950.462

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.918050.177
17DAP/reference0.888770.18
27DAP/reference1.162680.061
39DAP/reference1.067410.136
41DAP/reference0.842240.039
42DAP/reference1.188660.003
43DAP/reference1.038880.758
47DAP/reference1.275420.003
52DAP/reference1.131810.388
57DAP/reference1.186720.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.952340.038
27DAP/17DAP0.930880.614
39DAP/27DAP0.825220.056
41DAP/39DAP1.06190.807
42DAP/41DAP0.976630.752
43DAP/42DAP0.978510.801
47DAP/43DAP1.001260.99
52DAP/47DAP0.901740.565
57DAP/52DAP0.808660.143
57DAP/7DAP1.256731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.041640.732
17DAP/reference1.04760.822
27DAP/reference1.134530.026
39DAP/reference1.628450.006
41DAP/reference1.05280.655
42DAP/reference1.34340.076
43DAP/reference1.347130.013
47DAP/reference1.664870.026
52DAP/reference1.357380.033
57DAP/reference1.648120.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.834560.145
17DAP/reference1.021870.711
27DAP/reference1.084350.552
39DAP/reference1.364380.033
41DAP/reference1.129390.234
42DAP/reference0.977590.482
43DAP/reference0.931390.414
47DAP/reference1.032310.775
52DAP/reference1.134270.061
57DAP/reference0.901070.318

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.044240.469
17DAP/reference1.077860.394
27DAP/reference1.213160.033
39DAP/reference1.227020.011
41DAP/reference1.23060.065
42DAP/reference1.517460.028
43DAP/reference1.82410.006
47DAP/reference2.401680.006
52DAP/reference1.796080.06
57DAP/reference2.098660.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.12970.966
26DAP/20DAP1.214390.608
34DAP/26DAP1.173971
51DAP/34DAP1.794880.098
52DAP/51DAP1.093570.708
53DAP/52DAP1.0060.983
55DAP/53DAP0.906960.604
57DAP/55DAP0.765990.056
62DAP/57DAP1.722990.006
68DAP/62DAP1.619840.31
68DAP/14DAP1.314110.265

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.32850.077

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.8040.279
Mature Green Tomato/Ripe Tomato2.132440.015
Immature Eggplant/Mature Eggplant0.31907
Ripe Pepper/Ripe Tomato2.036650.258
Mature Eggplant/Ripe Tomato0.459260.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.248560.536
1-1-2/M821.082751
12-2/M820.694920.727
12-4/M820.857090.619
1-3/M821.2419
2-1-1/M820.989961
2-1/M820.47559
2-6/M821.821260.405
3-2/M820.77586
4-1-1/M821.399651
4-1/M820.55411
4-3-2/M822.638230.284
4-3/M821.358451
5-3/M821.031671
6-2/M821.637611
6-3/M821.21946
7-1/M821.13069
7-2/M821.81154
9-3-2/M821.771790.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.752420.243
IL2-6/WTpooled1.683680.441
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.83014
IL12-4/WTpooled0.86263
IL1-4/WTpooled1.323061
WT/WTpooled1.017121

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.850450.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.924091
DC3000/delta hrp 6h1.073390.857
DC3000/delta hrp 12h1.140651
DC3000/delta hrp 24h0.680970.038

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.637240.023
DC3000 delta B/DC3000 delta AB0.661670.032

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.121441
Exp 36h0.655710.504
Exp 60h0.796750.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996361
Var 0h0.947740.457
Var 12h I row2-row10.895430.514
Var 12h NI row2-row11.059261
Var 36h I row2-row11.456850.742
Var 36h NI row2-row13.364151
Var 60h I row2-row10.934080.832
Var 60h NI row2-row11.013861
Time course 0hI-0hNI1.04340.852
Time course 12hI-12hNI0.946530.586
Time course 36hI-36hNI0.872470.071
Time course 60hI-60hNI0.326250.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.979010.722
transgenic ySAMdc/azygous control (breaker)1.496140.248
transgenic ySAMdc/azygous control (red)1.518590.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.95410.087

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.062810.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.287640.09
Manapal/WT (break)2.013320.14
Manapal/WT (red)3.20150.15