Expression of 1-1-2.3.10.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00949 | 0.938 |
27DAP/17DAP | 1.10124 | 0.88 |
39DAP/27DAP | 0.89291 | 0.573 |
41DAP/39DAP | 1.32918 | 0.289 |
42DAP/41DAP | 1.4145 | 0.219 |
43DAP/42DAP | 1.31169 | 0.976 |
47DAP/43DAP | 0.85153 | 0.526 |
52DAP/47DAP | 1.054 | 0.993 |
57DAP/52DAP | 1.16306 | 0.837 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79329 | 0.362 |
17DAP/reference | 0.93235 | 0.419 |
27DAP/reference | 0.94688 | 0.417 |
39DAP/reference | 0.91476 | 0.292 |
41DAP/reference | 0.99791 | 1 |
42DAP/reference | 1.19364 | 0.001 |
43DAP/reference | 0.98911 | 0.763 |
47DAP/reference | 1.22949 | 0.006 |
52DAP/reference | 1.09833 | 1 |
57DAP/reference | 1.25305 | 0.084 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04675 | 0.63 |
27DAP/17DAP | 0.94516 | 0.684 |
39DAP/27DAP | 0.98843 | 0.925 |
41DAP/39DAP | 0.96037 | 0.804 |
42DAP/41DAP | 1.00644 | 1 |
43DAP/42DAP | 1.02482 | 0.478 |
47DAP/43DAP | 0.9728 | 0.743 |
52DAP/47DAP | 0.98786 | 0.93 |
57DAP/52DAP | 1.00322 | 1 |
57DAP/7DAP | 1.02829 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89587 | 0.088 |
17DAP/reference | 0.94513 | 0.144 |
27DAP/reference | 1.00803 | 0.551 |
39DAP/reference | 0.95598 | 0.083 |
41DAP/reference | 0.90594 | 0.029 |
42DAP/reference | 0.94284 | 0.014 |
43DAP/reference | 1.02398 | 0.408 |
47DAP/reference | 1.02756 | 0.632 |
52DAP/reference | 0.97593 | 0.523 |
57DAP/reference | 0.94862 | 0.27 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04912 | 0.787 |
17DAP/reference | 1.12017 | 0.216 |
27DAP/reference | 1.3476 | 0.163 |
39DAP/reference | 1.11753 | 0.543 |
41DAP/reference | 1.31009 | 0.162 |
42DAP/reference | 1.18734 | 0.068 |
43DAP/reference | 1.18183 | 0.202 |
47DAP/reference | 1.09348 | 0.095 |
52DAP/reference | 1.11731 | 0.03 |
57DAP/reference | 1.04049 | 0.654 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01485 | 0.827 |
17DAP/reference | 1.05016 | 0.627 |
27DAP/reference | 1.00473 | 1 |
39DAP/reference | 0.98606 | 0.591 |
41DAP/reference | 1.05927 | 0.537 |
42DAP/reference | 1.20306 | 0.045 |
43DAP/reference | 1.2124 | 0.137 |
47DAP/reference | 1.15326 | 0.099 |
52DAP/reference | 1.17261 | 0.257 |
57DAP/reference | 1.84703 | 0.042 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06451 | 0.878 |
26DAP/20DAP | 0.99714 | 1 |
34DAP/26DAP | 0.96985 | 0.909 |
51DAP/34DAP | 0.98076 | 0.856 |
52DAP/51DAP | 0.98993 | 1 |
53DAP/52DAP | 1.02851 | 0.797 |
55DAP/53DAP | 1.03428 | 0.771 |
57DAP/55DAP | 1.01232 | 0.955 |
62DAP/57DAP | 1.00493 | 1 |
68DAP/62DAP | 1.25708 | 0.944 |
68DAP/14DAP | 0.92517 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.30793 | 0.049 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.02294 | 1 |
Mature Green Tomato/Ripe Tomato | 0.59625 | 0.018 |
Immature Eggplant/Mature Eggplant | 1.56928 | 0.054 |
Ripe Pepper/Ripe Tomato | 0.58564 | 1 |
Mature Eggplant/Ripe Tomato | 0.54047 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00938 | 1 |
1-1-2/M82 | 0.95517 | 0.958 |
12-2/M82 | 1.11176 | 0.61 |
12-4/M82 | 1.09861 | 1 |
1-3/M82 | 0.97291 | 1 |
2-1-1/M82 | 1.06217 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.97888 | 1 |
3-2/M82 | 0.87774 | 1 |
4-1-1/M82 | 0.77938 | 1 |
4-1/M82 | 0.89718 | 1 |
4-3-2/M82 | 1.00004 | 1 |
4-3/M82 | 0.9368 | 1 |
5-3/M82 | 1.02247 | 1 |
6-2/M82 | 1.04653 | 1 |
6-3/M82 | 0.98942 | 1 |
7-1/M82 | 0.83294 | 0.803 |
7-2/M82 | 1.01565 | 1 |
9-3-2/M82 | 0.76098 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.50181 | |
IL1-4/WTpooled | 1.34308 | |
WT/WTpooled | 0.9501 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98539 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99769 | 1 |
DC3000/delta hrp 6h | 1.08558 | 1 |
DC3000/delta hrp 12h | 1.08914 | 1 |
DC3000/delta hrp 24h | 0.9328 | 0.554 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.71375 | 0.031 |
DC3000 delta B/DC3000 delta AB | 0.73142 | 0.033 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07794 | 1 |
Exp 36h | 0.97865 | 0.943 |
Exp 60h | 1.06639 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95667 | 1 |
Var 0h | 0.57243 | 0.594 |
Var 12h I row2-row1 | 0.86732 | 0.514 |
Var 12h NI row2-row1 | 0.97825 | 0.82 |
Var 36h I row2-row1 | 0.81088 | 1 |
Var 36h NI row2-row1 | 1.32341 | 1 |
Var 60h I row2-row1 | 1.18615 | 0.562 |
Var 60h NI row2-row1 | 1.06378 | 0.904 |
Time course 0hI-0hNI | 0.97992 | 0.927 |
Time course 12hI-12hNI | 1.00576 | 1 |
Time course 36hI-36hNI | 1.06177 | 0.651 |
Time course 60hI-60hNI | 0.45137 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97886 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.96885 | 1 |
transgenic ySAMdc/azygous control (red) | 1.02673 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96047 | 0.051 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95157 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.1628 | 0.14 |
Manapal/WT (break) | 1.0474 | 1 |
Manapal/WT (red) | 0.6085 | 0.181 |
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