Expression of 1-1-2.3.10.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009490.938
27DAP/17DAP1.101240.88
39DAP/27DAP0.892910.573
41DAP/39DAP1.329180.289
42DAP/41DAP1.41450.219
43DAP/42DAP1.311690.976
47DAP/43DAP0.851530.526
52DAP/47DAP1.0540.993
57DAP/52DAP1.163060.837

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.793290.362
17DAP/reference0.932350.419
27DAP/reference0.946880.417
39DAP/reference0.914760.292
41DAP/reference0.997911
42DAP/reference1.193640.001
43DAP/reference0.989110.763
47DAP/reference1.229490.006
52DAP/reference1.098331
57DAP/reference1.253050.084

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.046750.63
27DAP/17DAP0.945160.684
39DAP/27DAP0.988430.925
41DAP/39DAP0.960370.804
42DAP/41DAP1.006441
43DAP/42DAP1.024820.478
47DAP/43DAP0.97280.743
52DAP/47DAP0.987860.93
57DAP/52DAP1.003221
57DAP/7DAP1.028291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.895870.088
17DAP/reference0.945130.144
27DAP/reference1.008030.551
39DAP/reference0.955980.083
41DAP/reference0.905940.029
42DAP/reference0.942840.014
43DAP/reference1.023980.408
47DAP/reference1.027560.632
52DAP/reference0.975930.523
57DAP/reference0.948620.27

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.049120.787
17DAP/reference1.120170.216
27DAP/reference1.34760.163
39DAP/reference1.117530.543
41DAP/reference1.310090.162
42DAP/reference1.187340.068
43DAP/reference1.181830.202
47DAP/reference1.093480.095
52DAP/reference1.117310.03
57DAP/reference1.040490.654

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.014850.827
17DAP/reference1.050160.627
27DAP/reference1.004731
39DAP/reference0.986060.591
41DAP/reference1.059270.537
42DAP/reference1.203060.045
43DAP/reference1.21240.137
47DAP/reference1.153260.099
52DAP/reference1.172610.257
57DAP/reference1.847030.042

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.064510.878
26DAP/20DAP0.997141
34DAP/26DAP0.969850.909
51DAP/34DAP0.980760.856
52DAP/51DAP0.989931
53DAP/52DAP1.028510.797
55DAP/53DAP1.034280.771
57DAP/55DAP1.012320.955
62DAP/57DAP1.004931
68DAP/62DAP1.257080.944
68DAP/14DAP0.925171

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.307930.049

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.022941
Mature Green Tomato/Ripe Tomato0.596250.018
Immature Eggplant/Mature Eggplant1.569280.054
Ripe Pepper/Ripe Tomato0.585641
Mature Eggplant/Ripe Tomato0.540471

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.009381
1-1-2/M820.955170.958
12-2/M821.111760.61
12-4/M821.098611
1-3/M820.972911
2-1-1/M821.06217
2-1/M82N/AN/A
2-6/M820.978881
3-2/M820.877741
4-1-1/M820.779381
4-1/M820.897181
4-3-2/M821.000041
4-3/M820.93681
5-3/M821.022471
6-2/M821.046531
6-3/M820.989421
7-1/M820.832940.803
7-2/M821.015651
9-3-2/M820.760980.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.50181
IL1-4/WTpooled1.34308
WT/WTpooled0.95011

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.985391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.997691
DC3000/delta hrp 6h1.085581
DC3000/delta hrp 12h1.089141
DC3000/delta hrp 24h0.93280.554

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.713750.031
DC3000 delta B/DC3000 delta AB0.731420.033

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.077941
Exp 36h0.978650.943
Exp 60h1.066391

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.956671
Var 0h0.572430.594
Var 12h I row2-row10.867320.514
Var 12h NI row2-row10.978250.82
Var 36h I row2-row10.810881
Var 36h NI row2-row11.323411
Var 60h I row2-row11.186150.562
Var 60h NI row2-row11.063780.904
Time course 0hI-0hNI0.979920.927
Time course 12hI-12hNI1.005761
Time course 36hI-36hNI1.061770.651
Time course 60hI-60hNI0.451370.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.978860.567
transgenic ySAMdc/azygous control (breaker)0.968851
transgenic ySAMdc/azygous control (red)1.026731

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.960470.051

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.951570.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.16280.14
Manapal/WT (break)1.04741
Manapal/WT (red)0.60850.181