Expression of 1-1-2.3.10.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.31379 | 0.414 |
27DAP/17DAP | 0.49534 | 0.027 |
39DAP/27DAP | 0.48959 | 0.232 |
41DAP/39DAP | 0.61712 | 0.047 |
42DAP/41DAP | 0.77272 | 1 |
43DAP/42DAP | 1.11791 | 1 |
47DAP/43DAP | 0.55777 | 0.067 |
52DAP/47DAP | 1.07414 | 0.891 |
57DAP/52DAP | 0.87614 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75326 | 0.073 |
17DAP/reference | 0.63557 | 0.015 |
27DAP/reference | 0.61254 | 0.012 |
39DAP/reference | 0.69972 | 0.042 |
41DAP/reference | 0.48089 | 0.008 |
42DAP/reference | 0.43826 | 0.001 |
43DAP/reference | 0.42514 | 0.013 |
47DAP/reference | 0.35975 | 0.001 |
52DAP/reference | 0.4124 | 0.012 |
57DAP/reference | 0.41931 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.16562 | 0.036 |
27DAP/17DAP | 0.67953 | 0.164 |
39DAP/27DAP | 0.31268 | 0.028 |
41DAP/39DAP | 1.33449 | 0.058 |
42DAP/41DAP | 0.74323 | 0.011 |
43DAP/42DAP | 0.44074 | 0.022 |
47DAP/43DAP | 0.72588 | 0.012 |
52DAP/47DAP | 0.92016 | 0.671 |
57DAP/52DAP | 0.85846 | 0.528 |
57DAP/7DAP | 0.36572 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27477 | 0.06 |
17DAP/reference | 0.96113 | 0.389 |
27DAP/reference | 0.97632 | 0.43 |
39DAP/reference | 0.45219 | 0.012 |
41DAP/reference | 0.36331 | 0.01 |
42DAP/reference | 0.3475 | 0.01 |
43DAP/reference | 0.28731 | 0.008 |
47DAP/reference | 0.27769 | 0.03 |
52DAP/reference | 0.29763 | 0.01 |
57DAP/reference | 0.37341 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.43894 | 0.008 |
17DAP/reference | 0.48891 | 0.013 |
27DAP/reference | 0.64509 | 0.069 |
39DAP/reference | 0.31983 | 0.008 |
41DAP/reference | 0.43764 | 0.005 |
42DAP/reference | 0.49778 | 0.012 |
43DAP/reference | 0.38627 | 0.002 |
47DAP/reference | 0.53095 | 0.015 |
52DAP/reference | 0.28224 | 0.003 |
57DAP/reference | 0.16087 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.66373 | 0.019 |
17DAP/reference | 2.0162 | 0.215 |
27DAP/reference | 1.66902 | 0.02 |
39DAP/reference | 1.28186 | 0.169 |
41DAP/reference | 0.85294 | 0.185 |
42DAP/reference | 0.6398 | 0.016 |
43DAP/reference | 0.48527 | 0.023 |
47DAP/reference | 0.334 | 0.004 |
52DAP/reference | 0.58795 | 0.134 |
57DAP/reference | 0.98872 | 0.623 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03801 | 1 |
26DAP/20DAP | 1.19154 | 0.598 |
34DAP/26DAP | 0.84857 | 0.387 |
51DAP/34DAP | 0.43622 | 0.049 |
52DAP/51DAP | 0.93372 | 1 |
53DAP/52DAP | 0.88152 | 0.259 |
55DAP/53DAP | 0.81857 | 0.049 |
57DAP/55DAP | 1.23966 | 0.51 |
62DAP/57DAP | 1.06889 | 0.994 |
68DAP/62DAP | 0.87561 | 0.668 |
68DAP/14DAP | 0.41492 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.33664 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.31406 | 0.058 |
Mature Green Tomato/Ripe Tomato | 271.168 | 1 |
Immature Eggplant/Mature Eggplant | 0.33888 | 0.061 |
Ripe Pepper/Ripe Tomato | 44.3278 | 0.258 |
Mature Eggplant/Ripe Tomato | 19.523 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.37485 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.13863 | 0.277 |
IL2-6/WTpooled | 1.1951 | 0.584 |
IL7-5/WTpooled | 1.32067 | 0.792 |
IL7-3/WTpooled | 1.01889 | 1 |
IL12-4/WTpooled | 1.04309 | 0.785 |
IL1-4/WTpooled | 0.986 | 1 |
WT/WTpooled | 0.91167 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.86101 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96912 | 1 |
DC3000/delta hrp 6h | 0.98024 | 0.95 |
DC3000/delta hrp 12h | 0.92101 | 1 |
DC3000/delta hrp 24h | 0.90884 | 0.313 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.7345 | 0.043 |
DC3000 delta B/DC3000 delta AB | 0.57468 | 0.029 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00318 | 1 |
Exp 36h | 0.85498 | 0.589 |
Exp 60h | 0.6217 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05673 | 1 |
Var 0h | 0.97851 | 0.339 |
Var 12h I row2-row1 | 1.11723 | 0.654 |
Var 12h NI row2-row1 | 0.93456 | 0.627 |
Var 36h I row2-row1 | 0.75497 | 0.805 |
Var 36h NI row2-row1 | 1.62022 | 1 |
Var 60h I row2-row1 | 1.49381 | 0.562 |
Var 60h NI row2-row1 | 1.1259 | 0.904 |
Time course 0hI-0hNI | 1.04742 | 0.852 |
Time course 12hI-12hNI | 1.03691 | 0.836 |
Time course 36hI-36hNI | 1.08498 | 0.401 |
Time course 60hI-60hNI | 0.17151 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03237 | 1 |
transgenic ySAMdc/azygous control (breaker) | 3.84544 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.39455 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.61958 | 0.095 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 3.05689 | 0.227 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 17.6693 | 0.088 |
Manapal/WT (break) | 15.2567 | 0.123 |
Manapal/WT (red) | 3.71504 | 0.413 |
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