Expression of 1-1-2.3.10.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.313790.414
27DAP/17DAP0.495340.027
39DAP/27DAP0.489590.232
41DAP/39DAP0.617120.047
42DAP/41DAP0.772721
43DAP/42DAP1.117911
47DAP/43DAP0.557770.067
52DAP/47DAP1.074140.891
57DAP/52DAP0.876140.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.753260.073
17DAP/reference0.635570.015
27DAP/reference0.612540.012
39DAP/reference0.699720.042
41DAP/reference0.480890.008
42DAP/reference0.438260.001
43DAP/reference0.425140.013
47DAP/reference0.359750.001
52DAP/reference0.41240.012
57DAP/reference0.419310.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.165620.036
27DAP/17DAP0.679530.164
39DAP/27DAP0.312680.028
41DAP/39DAP1.334490.058
42DAP/41DAP0.743230.011
43DAP/42DAP0.440740.022
47DAP/43DAP0.725880.012
52DAP/47DAP0.920160.671
57DAP/52DAP0.858460.528
57DAP/7DAP0.365720.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.274770.06
17DAP/reference0.961130.389
27DAP/reference0.976320.43
39DAP/reference0.452190.012
41DAP/reference0.363310.01
42DAP/reference0.34750.01
43DAP/reference0.287310.008
47DAP/reference0.277690.03
52DAP/reference0.297630.01
57DAP/reference0.373410.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.438940.008
17DAP/reference0.488910.013
27DAP/reference0.645090.069
39DAP/reference0.319830.008
41DAP/reference0.437640.005
42DAP/reference0.497780.012
43DAP/reference0.386270.002
47DAP/reference0.530950.015
52DAP/reference0.282240.003
57DAP/reference0.160870.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.663730.019
17DAP/reference2.01620.215
27DAP/reference1.669020.02
39DAP/reference1.281860.169
41DAP/reference0.852940.185
42DAP/reference0.63980.016
43DAP/reference0.485270.023
47DAP/reference0.3340.004
52DAP/reference0.587950.134
57DAP/reference0.988720.623

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.038011
26DAP/20DAP1.191540.598
34DAP/26DAP0.848570.387
51DAP/34DAP0.436220.049
52DAP/51DAP0.933721
53DAP/52DAP0.881520.259
55DAP/53DAP0.818570.049
57DAP/55DAP1.239660.51
62DAP/57DAP1.068890.994
68DAP/62DAP0.875610.668
68DAP/14DAP0.414921

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.336640.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.314060.058
Mature Green Tomato/Ripe Tomato271.1681
Immature Eggplant/Mature Eggplant0.338880.061
Ripe Pepper/Ripe Tomato44.32780.258
Mature Eggplant/Ripe Tomato19.5230.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.37485
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.138630.277
IL2-6/WTpooled1.19510.584
IL7-5/WTpooled1.320670.792
IL7-3/WTpooled1.018891
IL12-4/WTpooled1.043090.785
IL1-4/WTpooled0.9861
WT/WTpooled0.911671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.861010.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.969121
DC3000/delta hrp 6h0.980240.95
DC3000/delta hrp 12h0.921011
DC3000/delta hrp 24h0.908840.313

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.73450.043
DC3000 delta B/DC3000 delta AB0.574680.029

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.003181
Exp 36h0.854980.589
Exp 60h0.62170.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.056731
Var 0h0.978510.339
Var 12h I row2-row11.117230.654
Var 12h NI row2-row10.934560.627
Var 36h I row2-row10.754970.805
Var 36h NI row2-row11.620221
Var 60h I row2-row11.493810.562
Var 60h NI row2-row11.12590.904
Time course 0hI-0hNI1.047420.852
Time course 12hI-12hNI1.036910.836
Time course 36hI-36hNI1.084980.401
Time course 60hI-60hNI0.171510.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.032371
transgenic ySAMdc/azygous control (breaker)3.845440.162
transgenic ySAMdc/azygous control (red)1.394550.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.619580.095

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt3.056890.227

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)17.66930.088
Manapal/WT (break)15.25670.123
Manapal/WT (red)3.715040.413