Expression of 1-1-2.3.10.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21352 | 0.615 |
27DAP/17DAP | 0.95281 | 0.984 |
39DAP/27DAP | 0.86838 | 0.549 |
41DAP/39DAP | 1.35291 | 0.619 |
42DAP/41DAP | 1.09838 | 0.992 |
43DAP/42DAP | 1.08031 | 1 |
47DAP/43DAP | 0.93336 | 0.68 |
52DAP/47DAP | 1.44764 | 0.549 |
57DAP/52DAP | 0.87519 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92093 | 0.284 |
17DAP/reference | 1.0645 | 0.016 |
27DAP/reference | 1.01372 | 0.66 |
39DAP/reference | 1.11062 | 0.079 |
41DAP/reference | 1.08705 | 0.393 |
42DAP/reference | 0.88938 | 0.033 |
43DAP/reference | 1.04603 | 0.617 |
47DAP/reference | 0.9423 | 0.148 |
52DAP/reference | 0.84092 | 0.135 |
57DAP/reference | 0.77049 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91137 | 0.454 |
27DAP/17DAP | 0.89265 | 0.648 |
39DAP/27DAP | 0.85528 | 0.126 |
41DAP/39DAP | 1.14114 | 0.514 |
42DAP/41DAP | 1.33538 | 0.007 |
43DAP/42DAP | 1.09683 | 0.446 |
47DAP/43DAP | 0.91594 | 0.373 |
52DAP/47DAP | 1.32457 | 0.377 |
57DAP/52DAP | 1.44162 | 0.12 |
57DAP/7DAP | 1.12037 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92257 | 0.27 |
17DAP/reference | 0.97953 | 0.518 |
27DAP/reference | 0.96377 | 0.462 |
39DAP/reference | 0.93087 | 0.23 |
41DAP/reference | 1.02834 | 1 |
42DAP/reference | 0.92334 | 0.275 |
43DAP/reference | 0.87351 | 0.21 |
47DAP/reference | 0.85386 | 0.101 |
52DAP/reference | 0.94109 | 0.304 |
57DAP/reference | 0.90738 | 0.105 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07208 | 0.62 |
17DAP/reference | 0.99874 | 0.786 |
27DAP/reference | 0.88208 | 0.111 |
39DAP/reference | 0.81191 | 0.129 |
41DAP/reference | 0.83733 | 0.098 |
42DAP/reference | 0.85231 | 0.15 |
43DAP/reference | 1.1233 | 0.268 |
47DAP/reference | 1.04734 | 0.658 |
52DAP/reference | 0.96383 | 0.22 |
57DAP/reference | 1.15192 | 0.104 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85311 | 0.104 |
17DAP/reference | 1.04734 | 0.65 |
27DAP/reference | 0.88314 | 0.102 |
39DAP/reference | 0.83462 | 0.063 |
41DAP/reference | 0.90248 | 0.371 |
42DAP/reference | 0.72333 | 0.032 |
43DAP/reference | 0.65025 | 0.022 |
47DAP/reference | 0.94115 | 0.371 |
52DAP/reference | 0.7527 | 0.068 |
57DAP/reference | 0.47815 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13428 | 0.817 |
26DAP/20DAP | 1.10533 | 1 |
34DAP/26DAP | 1.45717 | 0.819 |
51DAP/34DAP | 2.68897 | |
52DAP/51DAP | 1.45526 | 0.073 |
53DAP/52DAP | 0.68034 | 0.202 |
55DAP/53DAP | 1.70278 | 0.109 |
57DAP/55DAP | 0.79074 | 0.256 |
62DAP/57DAP | 1.11053 | 0.8 |
68DAP/62DAP | 1.21618 | 0.939 |
68DAP/14DAP | 0.65016 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.54449 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.2704 | |
Mature Green Tomato/Ripe Tomato | 0.7466 | 0.569 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 10.5624 | |
Mature Eggplant/Ripe Tomato | 1.24213 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01159 | 1 |
1-1-2/M82 | 0.97401 | 1 |
12-2/M82 | 1.02859 | 1 |
12-4/M82 | 1.08056 | |
1-3/M82 | 0.95786 | 1 |
2-1-1/M82 | 1.14942 | 0.764 |
2-1/M82 | 1.15934 | 1 |
2-6/M82 | 1.12986 | 0.695 |
3-2/M82 | 0.96423 | |
4-1-1/M82 | 0.9307 | 1 |
4-1/M82 | 0.95344 | |
4-3-2/M82 | 0.94051 | |
4-3/M82 | 0.80728 | 0.72 |
5-3/M82 | 0.94328 | 0.49 |
6-2/M82 | 0.97458 | 1 |
6-3/M82 | 1.06048 | 1 |
7-1/M82 | 1.3143 | |
7-2/M82 | 0.91949 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.53085 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.93734 | |
IL12-4/WTpooled | 1.32093 | 0.516 |
IL1-4/WTpooled | 1.00639 | 1 |
WT/WTpooled | 1.07737 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.27083 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05981 | 0.921 |
DC3000/delta hrp 6h | 1.2831 | 1 |
DC3000/delta hrp 12h | 1.61185 | 1 |
DC3000/delta hrp 24h | 0.97581 | 0.851 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.01184 | 0.648 |
DC3000 delta B/DC3000 delta AB | 1.14574 | 0.415 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98446 | 1 |
Exp 36h | 1.14504 | 1 |
Exp 60h | 1.00129 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98156 | 1 |
Var 0h | 0.54023 | 0.98 |
Var 12h I row2-row1 | 1.0667 | 0.506 |
Var 12h NI row2-row1 | 0.98173 | 1 |
Var 36h I row2-row1 | 0.98298 | 1 |
Var 36h NI row2-row1 | 2.07451 | 1 |
Var 60h I row2-row1 | 0.85734 | 0.287 |
Var 60h NI row2-row1 | 1.15213 | 0.904 |
Time course 0hI-0hNI | 0.92588 | 0.373 |
Time course 12hI-12hNI | 1.05825 | 0.647 |
Time course 36hI-36hNI | 1.27467 | 0.006 |
Time course 60hI-60hNI | 1.20505 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90756 | 0.409 |
transgenic ySAMdc/azygous control (breaker) | 1.08635 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.03026 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00294 | 0.854 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02478 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.35652 | 0.105 |
Manapal/WT (break) | 1.33212 | 0.14 |
Manapal/WT (red) | 1.07014 | 1 |
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