Expression of 1-1-2.3.10.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.213520.615
27DAP/17DAP0.952810.984
39DAP/27DAP0.868380.549
41DAP/39DAP1.352910.619
42DAP/41DAP1.098380.992
43DAP/42DAP1.080311
47DAP/43DAP0.933360.68
52DAP/47DAP1.447640.549
57DAP/52DAP0.875190.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.920930.284
17DAP/reference1.06450.016
27DAP/reference1.013720.66
39DAP/reference1.110620.079
41DAP/reference1.087050.393
42DAP/reference0.889380.033
43DAP/reference1.046030.617
47DAP/reference0.94230.148
52DAP/reference0.840920.135
57DAP/reference0.770490.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.911370.454
27DAP/17DAP0.892650.648
39DAP/27DAP0.855280.126
41DAP/39DAP1.141140.514
42DAP/41DAP1.335380.007
43DAP/42DAP1.096830.446
47DAP/43DAP0.915940.373
52DAP/47DAP1.324570.377
57DAP/52DAP1.441620.12
57DAP/7DAP1.120371

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.922570.27
17DAP/reference0.979530.518
27DAP/reference0.963770.462
39DAP/reference0.930870.23
41DAP/reference1.028341
42DAP/reference0.923340.275
43DAP/reference0.873510.21
47DAP/reference0.853860.101
52DAP/reference0.941090.304
57DAP/reference0.907380.105

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.072080.62
17DAP/reference0.998740.786
27DAP/reference0.882080.111
39DAP/reference0.811910.129
41DAP/reference0.837330.098
42DAP/reference0.852310.15
43DAP/reference1.12330.268
47DAP/reference1.047340.658
52DAP/reference0.963830.22
57DAP/reference1.151920.104

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.853110.104
17DAP/reference1.047340.65
27DAP/reference0.883140.102
39DAP/reference0.834620.063
41DAP/reference0.902480.371
42DAP/reference0.723330.032
43DAP/reference0.650250.022
47DAP/reference0.941150.371
52DAP/reference0.75270.068
57DAP/reference0.478150.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.134280.817
26DAP/20DAP1.105331
34DAP/26DAP1.457170.819
51DAP/34DAP2.68897
52DAP/51DAP1.455260.073
53DAP/52DAP0.680340.202
55DAP/53DAP1.702780.109
57DAP/55DAP0.790740.256
62DAP/57DAP1.110530.8
68DAP/62DAP1.216180.939
68DAP/14DAP0.650160.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.544490.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.2704
Mature Green Tomato/Ripe Tomato0.74660.569
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato10.5624
Mature Eggplant/Ripe Tomato1.24213

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.011591
1-1-2/M820.974011
12-2/M821.028591
12-4/M821.08056
1-3/M820.957861
2-1-1/M821.149420.764
2-1/M821.159341
2-6/M821.129860.695
3-2/M820.96423
4-1-1/M820.93071
4-1/M820.95344
4-3-2/M820.94051
4-3/M820.807280.72
5-3/M820.943280.49
6-2/M820.974581
6-3/M821.060481
7-1/M821.3143
7-2/M820.919490.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.530850.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.93734
IL12-4/WTpooled1.320930.516
IL1-4/WTpooled1.006391
WT/WTpooled1.077370.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.270830.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.059810.921
DC3000/delta hrp 6h1.28311
DC3000/delta hrp 12h1.611851
DC3000/delta hrp 24h0.975810.851

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.011840.648
DC3000 delta B/DC3000 delta AB1.145740.415

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.984461
Exp 36h1.145041
Exp 60h1.001291

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.981561
Var 0h0.540230.98
Var 12h I row2-row11.06670.506
Var 12h NI row2-row10.981731
Var 36h I row2-row10.982981
Var 36h NI row2-row12.074511
Var 60h I row2-row10.857340.287
Var 60h NI row2-row11.152130.904
Time course 0hI-0hNI0.925880.373
Time course 12hI-12hNI1.058250.647
Time course 36hI-36hNI1.274670.006
Time course 60hI-60hNI1.205050.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.907560.409
transgenic ySAMdc/azygous control (breaker)1.086350.248
transgenic ySAMdc/azygous control (red)1.030260.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.002940.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.024781

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.356520.105
Manapal/WT (break)1.332120.14
Manapal/WT (red)1.070141