Expression of 1-1-2.3.12.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.901610.486
27DAP/17DAP0.999961
39DAP/27DAP0.874020.482
41DAP/39DAP1.061360.85
42DAP/41DAP0.903911
43DAP/42DAP0.81240.495
47DAP/43DAP1.217190.474
52DAP/47DAP1.519050.556
57DAP/52DAP1.066310.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.312160.029
17DAP/reference1.255110.026
27DAP/reference1.226040.285
39DAP/reference1.285680.072
41DAP/reference1.549950.019
42DAP/reference1.08190.299
43DAP/reference1.029940.838
47DAP/reference1.029430.636
52DAP/reference1.096830.407
57DAP/reference1.023620.805

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.080250.87
27DAP/17DAP1.005620.969
39DAP/27DAP0.844270.437
41DAP/39DAP1.073351
42DAP/41DAP1.027460.929
43DAP/42DAP1.033481
47DAP/43DAP0.901860.701
52DAP/47DAP0.968170.901
57DAP/52DAP9.10130.393
57DAP/7DAP0.58271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.804840.07
17DAP/reference1.022591
27DAP/reference1.103980.049
39DAP/reference0.809240.083
41DAP/reference0.979320.565
42DAP/reference0.920140.289
43DAP/reference0.84380.159
47DAP/reference0.879440.383
52DAP/reference0.897630.049
57DAP/reference0.841060.052

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.962120.623
17DAP/reference1.361680.243
27DAP/reference1.303610.12
39DAP/reference1.137960.502
41DAP/reference1.143050.536
42DAP/reference1.25950.166
43DAP/reference1.385430.327
47DAP/reference1.209390.098
52DAP/reference0.87793
57DAP/reference1.378050.104

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.869780.071
17DAP/reference1.336080.111
27DAP/reference1.001090.763
39DAP/reference0.83830.076
41DAP/reference0.879670.019
42DAP/reference1.019731
43DAP/reference0.912130.348
47DAP/reference1.135590.966
52DAP/reference0.914030.415
57DAP/reference0.846660.187

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.589870.182
26DAP/20DAP1.49420.325
34DAP/26DAP1.32321
51DAP/34DAP1.808450.232
52DAP/51DAP0.8891
53DAP/52DAP1.221630.552
55DAP/53DAP1.24330.869
57DAP/55DAP1.479420.728
62DAP/57DAP0.991980.994
68DAP/62DAP0.776910.166
68DAP/14DAP0.70.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.02170.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.12763
Immature Eggplant/Mature Eggplant1.7328
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.19582

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.174910.742
1-1-2/M821.131641
12-2/M822.09015
12-4/M821.60311
1-3/M820.89608
2-1-1/M820.758380.465
2-1/M82N/AN/A
2-6/M820.860961
3-2/M82N/AN/A
4-1-1/M820.58219
4-1/M821.362221
4-3-2/M820.810741
4-3/M821.10029
5-3/M821.604631
6-2/M820.42785
6-3/M821.10735
7-1/M821.14479
7-2/M820.76130.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.814120.243
IL2-6/WTpooled0.90281
IL7-5/WTpooled1.188981
IL7-3/WTpooled0.880740.298
IL12-4/WTpooled0.996871
IL1-4/WTpooled1.006341
WT/WTpooled0.955171

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.049091

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.986081
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.932911
DC3000/delta hrp 24h0.893810.323

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.747180.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.909531
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.974261
Var 0h1.006281
Var 12h I row2-row10.84590.467
Var 12h NI row2-row10.851780.317
Var 36h I row2-row10.613080.313
Var 36h NI row2-row10.88140.706
Var 60h I row2-row13.12974
Var 60h NI row2-row10.947871
Time course 0hI-0hNI1.042840.852
Time course 12hI-12hNI0.943870.54
Time course 36hI-36hNI0.819810.023
Time course 60hI-60hNI0.371910.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.016340.863
transgenic ySAMdc/azygous control (breaker)1.316330.248
transgenic ySAMdc/azygous control (red)1.116360.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.898720.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.125360.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.731211
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.02881