Expression of 1-1-2.3.12.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90161 | 0.486 |
27DAP/17DAP | 0.99996 | 1 |
39DAP/27DAP | 0.87402 | 0.482 |
41DAP/39DAP | 1.06136 | 0.85 |
42DAP/41DAP | 0.90391 | 1 |
43DAP/42DAP | 0.8124 | 0.495 |
47DAP/43DAP | 1.21719 | 0.474 |
52DAP/47DAP | 1.51905 | 0.556 |
57DAP/52DAP | 1.06631 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31216 | 0.029 |
17DAP/reference | 1.25511 | 0.026 |
27DAP/reference | 1.22604 | 0.285 |
39DAP/reference | 1.28568 | 0.072 |
41DAP/reference | 1.54995 | 0.019 |
42DAP/reference | 1.0819 | 0.299 |
43DAP/reference | 1.02994 | 0.838 |
47DAP/reference | 1.02943 | 0.636 |
52DAP/reference | 1.09683 | 0.407 |
57DAP/reference | 1.02362 | 0.805 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08025 | 0.87 |
27DAP/17DAP | 1.00562 | 0.969 |
39DAP/27DAP | 0.84427 | 0.437 |
41DAP/39DAP | 1.07335 | 1 |
42DAP/41DAP | 1.02746 | 0.929 |
43DAP/42DAP | 1.03348 | 1 |
47DAP/43DAP | 0.90186 | 0.701 |
52DAP/47DAP | 0.96817 | 0.901 |
57DAP/52DAP | 9.1013 | 0.393 |
57DAP/7DAP | 0.5827 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80484 | 0.07 |
17DAP/reference | 1.02259 | 1 |
27DAP/reference | 1.10398 | 0.049 |
39DAP/reference | 0.80924 | 0.083 |
41DAP/reference | 0.97932 | 0.565 |
42DAP/reference | 0.92014 | 0.289 |
43DAP/reference | 0.8438 | 0.159 |
47DAP/reference | 0.87944 | 0.383 |
52DAP/reference | 0.89763 | 0.049 |
57DAP/reference | 0.84106 | 0.052 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96212 | 0.623 |
17DAP/reference | 1.36168 | 0.243 |
27DAP/reference | 1.30361 | 0.12 |
39DAP/reference | 1.13796 | 0.502 |
41DAP/reference | 1.14305 | 0.536 |
42DAP/reference | 1.2595 | 0.166 |
43DAP/reference | 1.38543 | 0.327 |
47DAP/reference | 1.20939 | 0.098 |
52DAP/reference | 0.87793 | |
57DAP/reference | 1.37805 | 0.104 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86978 | 0.071 |
17DAP/reference | 1.33608 | 0.111 |
27DAP/reference | 1.00109 | 0.763 |
39DAP/reference | 0.8383 | 0.076 |
41DAP/reference | 0.87967 | 0.019 |
42DAP/reference | 1.01973 | 1 |
43DAP/reference | 0.91213 | 0.348 |
47DAP/reference | 1.13559 | 0.966 |
52DAP/reference | 0.91403 | 0.415 |
57DAP/reference | 0.84666 | 0.187 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.58987 | 0.182 |
26DAP/20DAP | 1.4942 | 0.325 |
34DAP/26DAP | 1.3232 | 1 |
51DAP/34DAP | 1.80845 | 0.232 |
52DAP/51DAP | 0.889 | 1 |
53DAP/52DAP | 1.22163 | 0.552 |
55DAP/53DAP | 1.2433 | 0.869 |
57DAP/55DAP | 1.47942 | 0.728 |
62DAP/57DAP | 0.99198 | 0.994 |
68DAP/62DAP | 0.77691 | 0.166 |
68DAP/14DAP | 0.7 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0217 | 0.774 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.12763 | |
Immature Eggplant/Mature Eggplant | 1.7328 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.19582 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.17491 | 0.742 |
1-1-2/M82 | 1.13164 | 1 |
12-2/M82 | 2.09015 | |
12-4/M82 | 1.60311 | |
1-3/M82 | 0.89608 | |
2-1-1/M82 | 0.75838 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.86096 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.58219 | |
4-1/M82 | 1.36222 | 1 |
4-3-2/M82 | 0.81074 | 1 |
4-3/M82 | 1.10029 | |
5-3/M82 | 1.60463 | 1 |
6-2/M82 | 0.42785 | |
6-3/M82 | 1.10735 | |
7-1/M82 | 1.14479 | |
7-2/M82 | 0.7613 | 0.796 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.81412 | 0.243 |
IL2-6/WTpooled | 0.9028 | 1 |
IL7-5/WTpooled | 1.18898 | 1 |
IL7-3/WTpooled | 0.88074 | 0.298 |
IL12-4/WTpooled | 0.99687 | 1 |
IL1-4/WTpooled | 1.00634 | 1 |
WT/WTpooled | 0.95517 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04909 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98608 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.93291 | 1 |
DC3000/delta hrp 24h | 0.89381 | 0.323 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.74718 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90953 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97426 | 1 |
Var 0h | 1.00628 | 1 |
Var 12h I row2-row1 | 0.8459 | 0.467 |
Var 12h NI row2-row1 | 0.85178 | 0.317 |
Var 36h I row2-row1 | 0.61308 | 0.313 |
Var 36h NI row2-row1 | 0.8814 | 0.706 |
Var 60h I row2-row1 | 3.12974 | |
Var 60h NI row2-row1 | 0.94787 | 1 |
Time course 0hI-0hNI | 1.04284 | 0.852 |
Time course 12hI-12hNI | 0.94387 | 0.54 |
Time course 36hI-36hNI | 0.81981 | 0.023 |
Time course 60hI-60hNI | 0.37191 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01634 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 1.31633 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.11636 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89872 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.12536 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73121 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.0288 | 1 |
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