Expression of 1-1-2.3.13.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.09020.739
27DAP/17DAP1.741370.263
39DAP/27DAP1.792050.102
41DAP/39DAP1.037571
42DAP/41DAP1.278510.773
43DAP/42DAP1.175890.873
47DAP/43DAP0.891220.603
52DAP/47DAP0.936850.777
57DAP/52DAP1.135960.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.980140.589
17DAP/reference0.958060.342
27DAP/reference1.147160.042
39DAP/reference1.050540.474
41DAP/reference1.091520.158
42DAP/reference1.320290.001
43DAP/reference1.076090.126
47DAP/reference1.093440.11
52DAP/reference1.19790.019
57DAP/reference1.050280.073

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.003891
27DAP/17DAP1.035270.9
39DAP/27DAP1.305710.121
41DAP/39DAP0.927770.68
42DAP/41DAP1.039440.879
43DAP/42DAP1.096490.192
47DAP/43DAP1.099440.699
52DAP/47DAP1.04070.856
57DAP/52DAP1.04810.783
57DAP/7DAP1.240750.22

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.146120.16
17DAP/reference1.170670.006
27DAP/reference1.114190.041
39DAP/reference1.28410.007
41DAP/reference1.328840.029
42DAP/reference1.417270.009
43DAP/reference1.448980.008
47DAP/reference1.306520.047
52DAP/reference1.34580.021
57DAP/reference1.353590.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.053320.767
17DAP/reference0.96410.245
27DAP/reference1.099580.367
39DAP/reference1.107250.255
41DAP/reference1.141560.293
42DAP/reference1.056330.596
43DAP/reference0.969810.561
47DAP/reference0.95450.023
52DAP/reference1.04670.393
57DAP/reference1.035720.567

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.13390.18
17DAP/reference0.965510.592
27DAP/reference1.071520.575
39DAP/reference1.11640.094
41DAP/reference0.995530.754
42DAP/reference1.052530.481
43DAP/reference1.094990.28
47DAP/reference1.19880.009
52DAP/reference1.254760.182
57DAP/reference0.953540.394

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.040410.966
26DAP/20DAP0.903940.512
34DAP/26DAP1.02171
51DAP/34DAP0.899920.36
52DAP/51DAP0.988281
53DAP/52DAP0.99860.99
55DAP/53DAP1.040760.885
57DAP/55DAP1.030910.935
62DAP/57DAP1.053060.902
68DAP/62DAP0.76660.056
68DAP/14DAP0.908871

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.258550.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.803490.287
Immature Eggplant/Mature Eggplant2.805230.05
Ripe Pepper/Ripe Tomato0.055510.224
Mature Eggplant/Ripe Tomato0.053910.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.923720.944
1-1-2/M821.155481
12-2/M821.100171
12-4/M821.156211
1-3/M821.410650.255
2-1-1/M820.916490.683
2-1/M820.878980.74
2-6/M820.956251
3-2/M820.951981
4-1-1/M820.823981
4-1/M821.651830.853
4-3-2/M821.066871
4-3/M820.90921
5-3/M821.012231
6-2/M820.97081
6-3/M821.043191
7-1/M820.979141
7-2/M820.976171
9-3-2/M821.008981

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.341420.415
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.84450.418
IL12-4/WTpooled1.077060.737
IL1-4/WTpooled0.940570.476
WT/WTpooled1.006221

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.19215

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.983761
DC3000/delta hrp 6h7.748861
DC3000/delta hrp 12h1.038651
DC3000/delta hrp 24h1.019660.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.154110.27
DC3000 delta B/DC3000 delta AB1.036020.579

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.239130.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.015961
Var 0h0.906271
Var 12h I row2-row11.081770.324
Var 12h NI row2-row10.963530.82
Var 36h I row2-row11.08921
Var 36h NI row2-row10.926590.61
Var 60h I row2-row11.428880.562
Var 60h NI row2-row11.240560.904
Time course 0hI-0hNI1.127470.764
Time course 12hI-12hNI1.009061
Time course 36hI-36hNI0.919980.187
Time course 60hI-60hNI1.151860.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.413470.325
transgenic ySAMdc/azygous control (breaker)1.355911
transgenic ySAMdc/azygous control (red)0.938651

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.146880.033

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.143560.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.046271
Manapal/WT (break)1.08711
Manapal/WT (red)0.584480.181