Expression of 1-1-2.3.13.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0902 | 0.739 |
27DAP/17DAP | 1.74137 | 0.263 |
39DAP/27DAP | 1.79205 | 0.102 |
41DAP/39DAP | 1.03757 | 1 |
42DAP/41DAP | 1.27851 | 0.773 |
43DAP/42DAP | 1.17589 | 0.873 |
47DAP/43DAP | 0.89122 | 0.603 |
52DAP/47DAP | 0.93685 | 0.777 |
57DAP/52DAP | 1.13596 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98014 | 0.589 |
17DAP/reference | 0.95806 | 0.342 |
27DAP/reference | 1.14716 | 0.042 |
39DAP/reference | 1.05054 | 0.474 |
41DAP/reference | 1.09152 | 0.158 |
42DAP/reference | 1.32029 | 0.001 |
43DAP/reference | 1.07609 | 0.126 |
47DAP/reference | 1.09344 | 0.11 |
52DAP/reference | 1.1979 | 0.019 |
57DAP/reference | 1.05028 | 0.073 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00389 | 1 |
27DAP/17DAP | 1.03527 | 0.9 |
39DAP/27DAP | 1.30571 | 0.121 |
41DAP/39DAP | 0.92777 | 0.68 |
42DAP/41DAP | 1.03944 | 0.879 |
43DAP/42DAP | 1.09649 | 0.192 |
47DAP/43DAP | 1.09944 | 0.699 |
52DAP/47DAP | 1.0407 | 0.856 |
57DAP/52DAP | 1.0481 | 0.783 |
57DAP/7DAP | 1.24075 | 0.22 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14612 | 0.16 |
17DAP/reference | 1.17067 | 0.006 |
27DAP/reference | 1.11419 | 0.041 |
39DAP/reference | 1.2841 | 0.007 |
41DAP/reference | 1.32884 | 0.029 |
42DAP/reference | 1.41727 | 0.009 |
43DAP/reference | 1.44898 | 0.008 |
47DAP/reference | 1.30652 | 0.047 |
52DAP/reference | 1.3458 | 0.021 |
57DAP/reference | 1.35359 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05332 | 0.767 |
17DAP/reference | 0.9641 | 0.245 |
27DAP/reference | 1.09958 | 0.367 |
39DAP/reference | 1.10725 | 0.255 |
41DAP/reference | 1.14156 | 0.293 |
42DAP/reference | 1.05633 | 0.596 |
43DAP/reference | 0.96981 | 0.561 |
47DAP/reference | 0.9545 | 0.023 |
52DAP/reference | 1.0467 | 0.393 |
57DAP/reference | 1.03572 | 0.567 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1339 | 0.18 |
17DAP/reference | 0.96551 | 0.592 |
27DAP/reference | 1.07152 | 0.575 |
39DAP/reference | 1.1164 | 0.094 |
41DAP/reference | 0.99553 | 0.754 |
42DAP/reference | 1.05253 | 0.481 |
43DAP/reference | 1.09499 | 0.28 |
47DAP/reference | 1.1988 | 0.009 |
52DAP/reference | 1.25476 | 0.182 |
57DAP/reference | 0.95354 | 0.394 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04041 | 0.966 |
26DAP/20DAP | 0.90394 | 0.512 |
34DAP/26DAP | 1.0217 | 1 |
51DAP/34DAP | 0.89992 | 0.36 |
52DAP/51DAP | 0.98828 | 1 |
53DAP/52DAP | 0.9986 | 0.99 |
55DAP/53DAP | 1.04076 | 0.885 |
57DAP/55DAP | 1.03091 | 0.935 |
62DAP/57DAP | 1.05306 | 0.902 |
68DAP/62DAP | 0.7666 | 0.056 |
68DAP/14DAP | 0.90887 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.25855 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.80349 | 0.287 |
Immature Eggplant/Mature Eggplant | 2.80523 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.05551 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.05391 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92372 | 0.944 |
1-1-2/M82 | 1.15548 | 1 |
12-2/M82 | 1.10017 | 1 |
12-4/M82 | 1.15621 | 1 |
1-3/M82 | 1.41065 | 0.255 |
2-1-1/M82 | 0.91649 | 0.683 |
2-1/M82 | 0.87898 | 0.74 |
2-6/M82 | 0.95625 | 1 |
3-2/M82 | 0.95198 | 1 |
4-1-1/M82 | 0.82398 | 1 |
4-1/M82 | 1.65183 | 0.853 |
4-3-2/M82 | 1.06687 | 1 |
4-3/M82 | 0.9092 | 1 |
5-3/M82 | 1.01223 | 1 |
6-2/M82 | 0.9708 | 1 |
6-3/M82 | 1.04319 | 1 |
7-1/M82 | 0.97914 | 1 |
7-2/M82 | 0.97617 | 1 |
9-3-2/M82 | 1.00898 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.34142 | 0.415 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.8445 | 0.418 |
IL12-4/WTpooled | 1.07706 | 0.737 |
IL1-4/WTpooled | 0.94057 | 0.476 |
WT/WTpooled | 1.00622 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.19215 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98376 | 1 |
DC3000/delta hrp 6h | 7.74886 | 1 |
DC3000/delta hrp 12h | 1.03865 | 1 |
DC3000/delta hrp 24h | 1.01966 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15411 | 0.27 |
DC3000 delta B/DC3000 delta AB | 1.03602 | 0.579 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.23913 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01596 | 1 |
Var 0h | 0.90627 | 1 |
Var 12h I row2-row1 | 1.08177 | 0.324 |
Var 12h NI row2-row1 | 0.96353 | 0.82 |
Var 36h I row2-row1 | 1.0892 | 1 |
Var 36h NI row2-row1 | 0.92659 | 0.61 |
Var 60h I row2-row1 | 1.42888 | 0.562 |
Var 60h NI row2-row1 | 1.24056 | 0.904 |
Time course 0hI-0hNI | 1.12747 | 0.764 |
Time course 12hI-12hNI | 1.00906 | 1 |
Time course 36hI-36hNI | 0.91998 | 0.187 |
Time course 60hI-60hNI | 1.15186 | 0.042 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.41347 | 0.325 |
transgenic ySAMdc/azygous control (breaker) | 1.35591 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93865 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14688 | 0.033 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.14356 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.04627 | 1 |
Manapal/WT (break) | 1.0871 | 1 |
Manapal/WT (red) | 0.58448 | 0.181 |
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