Expression of 1-1-2.3.13.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2326 | 0.485 |
27DAP/17DAP | 1.24193 | 0.749 |
39DAP/27DAP | 0.81642 | 0.425 |
41DAP/39DAP | 0.98101 | 0.837 |
42DAP/41DAP | 0.90586 | 1 |
43DAP/42DAP | 1.24444 | 0.772 |
47DAP/43DAP | 1.09813 | 0.999 |
52DAP/47DAP | 0.85372 | 0.612 |
57DAP/52DAP | 1.03398 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90778 | 0.211 |
17DAP/reference | 1.05138 | 0.442 |
27DAP/reference | 1.0798 | 0.135 |
39DAP/reference | 0.98047 | 0.663 |
41DAP/reference | 1.06084 | 0.759 |
42DAP/reference | 0.88047 | 0.004 |
43DAP/reference | 1.00858 | 0.942 |
47DAP/reference | 0.98804 | 0.473 |
52DAP/reference | 0.91873 | 0.275 |
57DAP/reference | 1.21684 | 0.032 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2575 | 0.445 |
27DAP/17DAP | 1.03806 | 1 |
39DAP/27DAP | 1.00886 | 0.874 |
41DAP/39DAP | 1.45114 | 0.084 |
42DAP/41DAP | 1.14131 | 0.752 |
43DAP/42DAP | 0.74667 | 0.029 |
47DAP/43DAP | 1.01986 | 1 |
52DAP/47DAP | 1.05824 | 0.868 |
57DAP/52DAP | 1.14191 | 0.547 |
57DAP/7DAP | 1.26589 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82052 | 0.047 |
17DAP/reference | 0.93743 | 0.015 |
27DAP/reference | 0.86728 | 0.01 |
39DAP/reference | 0.90299 | 0.095 |
41DAP/reference | 0.8766 | 0.107 |
42DAP/reference | 0.90081 | 0.01 |
43DAP/reference | 0.94953 | 0.03 |
47DAP/reference | 0.90698 | 0.293 |
52DAP/reference | 0.77411 | 0.012 |
57DAP/reference | 0.9278 | 0.123 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87812 | 0.152 |
17DAP/reference | 0.84868 | 0.022 |
27DAP/reference | 0.83311 | 0.067 |
39DAP/reference | 0.8006 | 0.077 |
41DAP/reference | 0.83156 | 0.094 |
42DAP/reference | 0.91407 | 0.237 |
43DAP/reference | 1.04579 | 0.854 |
47DAP/reference | 1.06844 | 0.332 |
52DAP/reference | 0.99009 | 0.619 |
57DAP/reference | 0.88528 | 0.298 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91404 | 0.087 |
17DAP/reference | 0.95981 | 0.579 |
27DAP/reference | 0.98048 | 0.516 |
39DAP/reference | 0.93357 | 0.076 |
41DAP/reference | 0.89387 | 0.022 |
42DAP/reference | 0.82083 | 0.087 |
43DAP/reference | 0.80253 | 0.025 |
47DAP/reference | 0.9984 | 0.708 |
52DAP/reference | 0.97488 | 0.65 |
57DAP/reference | 0.90495 | 0.217 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11188 | 0.966 |
26DAP/20DAP | 1.17234 | 0.647 |
34DAP/26DAP | 1.31766 | 1 |
51DAP/34DAP | 1.11591 | 0.666 |
52DAP/51DAP | 1.03266 | 1 |
53DAP/52DAP | 1.38812 | 0.166 |
55DAP/53DAP | 1.05211 | 0.927 |
57DAP/55DAP | 1.40539 | 0.51 |
62DAP/57DAP | 1.001 | 1 |
68DAP/62DAP | 1.20602 | 0.899 |
68DAP/14DAP | 0.71041 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.8478 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.94813 | 0.569 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.86204 | |
Mature Eggplant/Ripe Tomato | 0.6925 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.02549 | 1 |
12-2/M82 | 1.03181 | |
12-4/M82 | 0.64394 | |
1-3/M82 | 0.75545 | |
2-1-1/M82 | 0.86585 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.85346 | 1 |
3-2/M82 | 0.773 | |
4-1-1/M82 | 0.69885 | |
4-1/M82 | 0.99968 | 1 |
4-3-2/M82 | 0.8164 | 0.698 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.89109 | 1 |
6-2/M82 | 0.52623 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.97489 | |
7-2/M82 | 0.88247 | 0.434 |
9-3-2/M82 | 0.96108 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.07148 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.87702 | 0.418 |
IL12-4/WTpooled | 0.90365 | 0.581 |
IL1-4/WTpooled | 0.84728 | 0.415 |
WT/WTpooled | 1.00583 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93632 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97696 | 1 |
DC3000/delta hrp 6h | 0.95968 | 0.95 |
DC3000/delta hrp 12h | 1.05353 | 1 |
DC3000/delta hrp 24h | 1.09703 | 0.535 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08614 | |
Var 0h | 0.85508 | 0.196 |
Var 12h I row2-row1 | 0.88298 | 0.77 |
Var 12h NI row2-row1 | 0.94844 | 0.36 |
Var 36h I row2-row1 | 1.14859 | 0.908 |
Var 36h NI row2-row1 | 0.83809 | 0.584 |
Var 60h I row2-row1 | 0.94119 | 0.292 |
Var 60h NI row2-row1 | 0.74385 | 1 |
Time course 0hI-0hNI | 1.0302 | 0.662 |
Time course 12hI-12hNI | 0.82361 | 0.393 |
Time course 36hI-36hNI | 1.33828 | 0.011 |
Time course 60hI-60hNI | 1.4282 | 0.019 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9015 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 1.07649 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03781 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9864 | 0.256 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.96466 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.09978 | 1 |
Manapal/WT (break) | 0.84377 | 1 |
Manapal/WT (red) | 0.986 | 0.863 |
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