Expression of 1-1-2.3.13.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.23260.485
27DAP/17DAP1.241930.749
39DAP/27DAP0.816420.425
41DAP/39DAP0.981010.837
42DAP/41DAP0.905861
43DAP/42DAP1.244440.772
47DAP/43DAP1.098130.999
52DAP/47DAP0.853720.612
57DAP/52DAP1.033980.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.907780.211
17DAP/reference1.051380.442
27DAP/reference1.07980.135
39DAP/reference0.980470.663
41DAP/reference1.060840.759
42DAP/reference0.880470.004
43DAP/reference1.008580.942
47DAP/reference0.988040.473
52DAP/reference0.918730.275
57DAP/reference1.216840.032

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.25750.445
27DAP/17DAP1.038061
39DAP/27DAP1.008860.874
41DAP/39DAP1.451140.084
42DAP/41DAP1.141310.752
43DAP/42DAP0.746670.029
47DAP/43DAP1.019861
52DAP/47DAP1.058240.868
57DAP/52DAP1.141910.547
57DAP/7DAP1.265891

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.820520.047
17DAP/reference0.937430.015
27DAP/reference0.867280.01
39DAP/reference0.902990.095
41DAP/reference0.87660.107
42DAP/reference0.900810.01
43DAP/reference0.949530.03
47DAP/reference0.906980.293
52DAP/reference0.774110.012
57DAP/reference0.92780.123

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.878120.152
17DAP/reference0.848680.022
27DAP/reference0.833110.067
39DAP/reference0.80060.077
41DAP/reference0.831560.094
42DAP/reference0.914070.237
43DAP/reference1.045790.854
47DAP/reference1.068440.332
52DAP/reference0.990090.619
57DAP/reference0.885280.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914040.087
17DAP/reference0.959810.579
27DAP/reference0.980480.516
39DAP/reference0.933570.076
41DAP/reference0.893870.022
42DAP/reference0.820830.087
43DAP/reference0.802530.025
47DAP/reference0.99840.708
52DAP/reference0.974880.65
57DAP/reference0.904950.217

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.111880.966
26DAP/20DAP1.172340.647
34DAP/26DAP1.317661
51DAP/34DAP1.115910.666
52DAP/51DAP1.032661
53DAP/52DAP1.388120.166
55DAP/53DAP1.052110.927
57DAP/55DAP1.405390.51
62DAP/57DAP1.0011
68DAP/62DAP1.206020.899
68DAP/14DAP0.710411

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.84780.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.948130.569
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.86204
Mature Eggplant/Ripe Tomato0.69251

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.025491
12-2/M821.03181
12-4/M820.64394
1-3/M820.75545
2-1-1/M820.86585
2-1/M82N/AN/A
2-6/M820.853461
3-2/M820.773
4-1-1/M820.69885
4-1/M820.999681
4-3-2/M820.81640.698
4-3/M82N/AN/A
5-3/M820.891091
6-2/M820.52623
6-3/M82N/AN/A
7-1/M820.97489
7-2/M820.882470.434
9-3-2/M820.961080.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.071480.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.877020.418
IL12-4/WTpooled0.903650.581
IL1-4/WTpooled0.847280.415
WT/WTpooled1.005831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.936321

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.976961
DC3000/delta hrp 6h0.959680.95
DC3000/delta hrp 12h1.053531
DC3000/delta hrp 24h1.097030.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.08614
Var 0h0.855080.196
Var 12h I row2-row10.882980.77
Var 12h NI row2-row10.948440.36
Var 36h I row2-row11.148590.908
Var 36h NI row2-row10.838090.584
Var 60h I row2-row10.941190.292
Var 60h NI row2-row10.743851
Time course 0hI-0hNI1.03020.662
Time course 12hI-12hNI0.823610.393
Time course 36hI-36hNI1.338280.011
Time course 60hI-60hNI1.42820.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.90150.286
transgenic ySAMdc/azygous control (breaker)1.076491
transgenic ySAMdc/azygous control (red)1.037810.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.98640.256

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.964660.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.099781
Manapal/WT (break)0.843771
Manapal/WT (red)0.9860.863