TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-2.3.14.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.556960.443
27DAP/17DAP2.003870.134
39DAP/27DAP3.300880.533
41DAP/39DAP2.187310.468
42DAP/41DAP1.016421
43DAP/42DAP1.413431
47DAP/43DAP0.236580.04
52DAP/47DAP0.824030.521
57DAP/52DAP0.929090.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.787030.08
17DAP/reference0.844490.065
27DAP/reference1.091430.446
39DAP/reference0.829710.085
41DAP/reference0.751620.031
42DAP/reference3.568430.043
43DAP/reference0.953220.429
47DAP/reference0.957870.322
52DAP/reference0.71710.084
57DAP/reference1.038950.511

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.930560.289
27DAP/17DAP1.112430.686
39DAP/27DAP5.27020.022
41DAP/39DAP5.013830.005
42DAP/41DAP0.586010.007
43DAP/42DAP0.406660.022
47DAP/43DAP1.120690.331
52DAP/47DAP1.334820.883
57DAP/52DAP0.529140.176
57DAP/7DAP0.985051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.170340.732
17DAP/reference2.057970.008
27DAP/reference2.25050.088
39DAP/reference3.128130.016
41DAP/reference1.47990.023
42DAP/reference2.514720.046
43DAP/reference1.985050.024
47DAP/reference2.147990.033
52DAP/reference2.664060.008
57DAP/reference2.878090.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.740490.018
17DAP/reference1.071790.496
27DAP/reference1.130820.283
39DAP/reference2.482110.03
41DAP/reference1.509430.016
42DAP/reference1.961910.018
43DAP/reference2.663140.033
47DAP/reference3.572690.014
52DAP/reference1.460760.014
57DAP/reference3.687280.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.027320.653
17DAP/reference1.301290.311
27DAP/reference1.568290.014
39DAP/reference2.000470.006
41DAP/reference1.950380.009
42DAP/reference1.166780.391
43DAP/reference1.25020.205
47DAP/reference0.765890.017
52DAP/reference1.687060.051
57DAP/reference1.027340.902

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.052561
26DAP/20DAP0.984911
34DAP/26DAP0.993031
51DAP/34DAP1.34488N/A
52DAP/51DAP2.32840.454
53DAP/52DAP1.058470.895
55DAP/53DAP1.208480.848
57DAP/55DAP1.24220.826
62DAP/57DAP0.822830.088
68DAP/62DAP1.088191
68DAP/14DAP1.1490.069

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker10.21790.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.275580.089
Mature Green Tomato/Ripe Tomato11.84160.015
Immature Eggplant/Mature Eggplant0.88490.176
Ripe Pepper/Ripe Tomato0.598960.224
Mature Eggplant/Ripe Tomato1.696210.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.757250.503
1-1-2/M821.324761
12-2/M821.278841
12-4/M821.24161
1-3/M822.175760.248
2-1-1/M820.729670.465
2-1/M822.952090.32
2-6/M821.259250.385
3-2/M823.96911N/A
4-1-1/M823.70240.876
4-1/M821.487750.853
4-3-2/M824.767560.508
4-3/M820.910311
5-3/M821.574780.496
6-2/M8210.04990.235
6-3/M821.090181
7-1/M82N/AN/A
7-2/M821.854890.263
9-3-2/M823.1469N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.78379N/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.8519N/A
IL12-4/WTpooled0.80401N/A
IL1-4/WTpooled1.10386N/A
WT/WTpooled0.919111

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.627260.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.067450.823
DC3000/delta hrp 6h0.888370.95
DC3000/delta hrp 12h0.86581
DC3000/delta hrp 24h2.246970.025

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.206880.042
DC3000 delta B/DC3000 delta AB4.4930.023

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.473531
Exp 36h1.38480.693
Exp 60h2.378410.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.029861
Var 0h0.719740.457
Var 12h I row2-row11.013991
Var 12h NI row2-row12.854620.203
Var 36h I row2-row11.211470.742
Var 36h NI row2-row10.495160.478
Var 60h I row2-row11.113340.562
Var 60h NI row2-row10.734590.818
Time course 0hI-0hNI2.06290.63
Time course 12hI-12hNI1.97160.475
Time course 36hI-36hNI10.36520.004
Time course 60hI-60hNI94.34760.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.423360.249
transgenic ySAMdc/azygous control (breaker)0.913680.49
transgenic ySAMdc/azygous control (red)1.136320.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.094950.057

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.311530.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.896351
Manapal/WT (break)0.464040.333
Manapal/WT (red)0.710890.503