Expression of 1-1-2.3.14.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.002570.927
27DAP/17DAP0.959330.945
39DAP/27DAP1.364390.985
41DAP/39DAP1.441040.426
42DAP/41DAP1.109070.945
43DAP/42DAP1.041191
47DAP/43DAP0.965590.859
52DAP/47DAP1.32030.521
57DAP/52DAP1.072160.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.022240.994
17DAP/reference1.087050.108
27DAP/reference1.035840.468
39DAP/reference1.031150.486
41DAP/reference1.115080.158
42DAP/reference0.940790.069
43DAP/reference1.070360.217
47DAP/reference1.025721
52DAP/reference0.91780.237
57DAP/reference0.953190.34

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991470.782
27DAP/17DAP0.956670.748
39DAP/27DAP1.1520.224
41DAP/39DAP0.997231
42DAP/41DAP1.108570.539
43DAP/42DAP0.951660.522
47DAP/43DAP0.972520.87
52DAP/47DAP0.911440.389
57DAP/52DAP0.890.119
57DAP/7DAP1.04491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914680.27
17DAP/reference0.903720.025
27DAP/reference0.893660.023
39DAP/reference0.937620.043
41DAP/reference0.921450.07
42DAP/reference0.90670.017
43DAP/reference0.890310.054
47DAP/reference0.958660.504
52DAP/reference0.853490.02
57DAP/reference0.914740.056

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080640.337
17DAP/reference1.102380.033
27DAP/reference1.003881
39DAP/reference1.001510.745
41DAP/reference0.923870.156
42DAP/reference0.877150.05
43DAP/reference1.134430.137
47DAP/reference1.043850.731
52DAP/reference1.105810.279
57DAP/reference1.385570.024

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.892520.071
17DAP/reference0.926050.198
27DAP/reference0.902850.063
39DAP/reference0.930.122
41DAP/reference0.916640.096
42DAP/reference0.914490.087
43DAP/reference0.904690.179
47DAP/reference1.110690.081
52DAP/reference0.894320.238
57DAP/reference1.100120.636

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.962221
26DAP/20DAP1.130210.663
34DAP/26DAP1.17830.542
51DAP/34DAP0.954510.727
52DAP/51DAP1.074910.431
53DAP/52DAP1.031860.921
55DAP/53DAP0.925130.619
57DAP/55DAP0.925920.612
62DAP/57DAP1.093070.767
68DAP/62DAP0.728230.118
68DAP/14DAP0.85631

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.701790.065

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.876650.063
Mature Green Tomato/Ripe Tomato0.952830.522
Immature Eggplant/Mature Eggplant0.819660.366
Ripe Pepper/Ripe Tomato0.386080.224
Mature Eggplant/Ripe Tomato0.650370.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.056930.877
1-1-2/M820.74261
12-2/M820.991331
12-4/M821.112010.611
1-3/M821.165411
2-1-1/M821.078930.422
2-1/M821.01051
2-6/M821.18130.695
3-2/M82N/AN/A
4-1-1/M820.981541
4-1/M820.985591
4-3-2/M820.869071
4-3/M821.168340.268
5-3/M820.912491
6-2/M820.893060.481
6-3/M821.096951
7-1/M82N/AN/A
7-2/M821.054141
9-3-2/M820.825880.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.991561
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.044741
IL12-4/WTpooled1.209520.525
IL1-4/WTpooled1.085790.426
WT/WTpooled0.952621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.359750.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.067750.846
DC3000/delta hrp 6h0.956580.95
DC3000/delta hrp 12h1.057831
DC3000/delta hrp 24h1.021270.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.951890.485
DC3000 delta B/DC3000 delta AB1.032740.636

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.150861
Exp 36h1.133091
Exp 60h1.004811

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.967751
Var 0h0.994951
Var 12h I row2-row10.861580.565
Var 12h NI row2-row11.019741
Var 36h I row2-row10.829711
Var 36h NI row2-row10.927870.522
Var 60h I row2-row10.770040.287
Var 60h NI row2-row10.982291
Time course 0hI-0hNI1.053440.833
Time course 12hI-12hNI0.912030.698
Time course 36hI-36hNI1.235850.006
Time course 60hI-60hNI3.222840.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.004221
transgenic ySAMdc/azygous control (breaker)1.224260.248
transgenic ySAMdc/azygous control (red)0.969991

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.020740.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.049281

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.839041
Manapal/WT (break)0.859330.333
Manapal/WT (red)1.195010.164