Expression of 1-1-2.3.14.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.71473 | 0.116 |
27DAP/17DAP | 0.85483 | 0.694 |
39DAP/27DAP | 1.28591 | 0.511 |
41DAP/39DAP | 0.6238 | 0.063 |
42DAP/41DAP | 0.94187 | 1 |
43DAP/42DAP | 1.14391 | 1 |
47DAP/43DAP | 0.4949 | 0.052 |
52DAP/47DAP | 1.03388 | 0.994 |
57DAP/52DAP | 1.40082 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.79404 | 0.015 |
17DAP/reference | 1.137 | 1 |
27DAP/reference | 0.62224 | 0.012 |
39DAP/reference | 0.67145 | 0.04 |
41DAP/reference | 0.7285 | 0.049 |
42DAP/reference | 1.21175 | 0.002 |
43DAP/reference | 0.81273 | 0.023 |
47DAP/reference | 0.80768 | 0.001 |
52DAP/reference | 0.46114 | 0.012 |
57DAP/reference | 0.6141 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90098 | 0.35 |
27DAP/17DAP | 1.01171 | 0.98 |
39DAP/27DAP | 0.78451 | 0.05 |
41DAP/39DAP | 1.03309 | 0.973 |
42DAP/41DAP | 0.94573 | 0.662 |
43DAP/42DAP | 0.8566 | 0.039 |
47DAP/43DAP | 1.62667 | 0.906 |
52DAP/47DAP | 0.55255 | 0.058 |
57DAP/52DAP | 0.94083 | 0.632 |
57DAP/7DAP | 0.3406 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.95845 | 0.024 |
17DAP/reference | 2.19077 | 0.006 |
27DAP/reference | 1.54582 | 0.009 |
39DAP/reference | 1.3165 | 0.016 |
41DAP/reference | 1.60959 | 0.012 |
42DAP/reference | 1.41271 | 0.03 |
43DAP/reference | 1.50898 | 0.011 |
47DAP/reference | 1.25321 | 0.155 |
52DAP/reference | 1.28998 | 0.229 |
57DAP/reference | 1.14229 | 0.536 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20707 | 0.507 |
17DAP/reference | 1.55591 | 0.034 |
27DAP/reference | 1.43762 | 0.083 |
39DAP/reference | 0.89142 | 0.147 |
41DAP/reference | 1.24083 | 0.027 |
42DAP/reference | 1.54232 | 0.011 |
43DAP/reference | 0.78301 | 0.108 |
47DAP/reference | 1.12404 | 0.572 |
52DAP/reference | 0.54649 | 0.003 |
57DAP/reference | 0.70317 | 0.037 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.62731 | 0.015 |
17DAP/reference | 1.55044 | 0.217 |
27DAP/reference | 1.63923 | 0.026 |
39DAP/reference | 1.87533 | 0.009 |
41DAP/reference | 1.17147 | 0.319 |
42DAP/reference | 1.1788 | 0.233 |
43DAP/reference | 1.28131 | 0.084 |
47DAP/reference | 0.50836 | 0.004 |
52DAP/reference | 2.42294 | 0.278 |
57DAP/reference | 0.98056 | 0.534 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05024 | 0.966 |
26DAP/20DAP | 2.44732 | 0.099 |
34DAP/26DAP | 0.74089 | 0.272 |
51DAP/34DAP | 0.864 | 0.268 |
52DAP/51DAP | 1.15602 | 0.377 |
53DAP/52DAP | 0.90276 | 0.581 |
55DAP/53DAP | 0.69106 | 0.029 |
57DAP/55DAP | 1.3873 | 0.643 |
62DAP/57DAP | 1.0639 | 0.868 |
68DAP/62DAP | 0.8861 | 0.7 |
68DAP/14DAP | 1.21904 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.82173 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.9935 | 0.863 |
Mature Green Tomato/Ripe Tomato | 1.61668 | 0.523 |
Immature Eggplant/Mature Eggplant | 0.70776 | 0.064 |
Ripe Pepper/Ripe Tomato | 1.5211 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.8533 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.89402 | 0.736 |
1-1-2/M82 | 1.16378 | 1 |
12-2/M82 | 0.8233 | 0.955 |
12-4/M82 | 1.10748 | 1 |
1-3/M82 | 1.58579 | 0.277 |
2-1-1/M82 | 1.05079 | 1 |
2-1/M82 | 1.0652 | 1 |
2-6/M82 | 1.31354 | 0.329 |
3-2/M82 | 0.90619 | |
4-1-1/M82 | 1.10522 | 1 |
4-1/M82 | 0.9318 | |
4-3-2/M82 | 1.82759 | 0.262 |
4-3/M82 | 1.79729 | 0.268 |
5-3/M82 | 1.24054 | 0.572 |
6-2/M82 | 2.43351 | 0.235 |
6-3/M82 | 1.07214 | 1 |
7-1/M82 | 1.20034 | 1 |
7-2/M82 | 1.68234 | 0.318 |
9-3-2/M82 | 1.41292 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.06402 | 0.277 |
IL2-6/WTpooled | 1.00425 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.09426 | 1 |
IL12-4/WTpooled | 1.00103 | 1 |
IL1-4/WTpooled | 1.06551 | 1 |
WT/WTpooled | 1.1089 | 0.89 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9552 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97032 | 1 |
DC3000/delta hrp 6h | 1.03215 | 0.95 |
DC3000/delta hrp 12h | 1.39201 | 1 |
DC3000/delta hrp 24h | 1.10674 | 0.502 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.32999 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.45054 | 0.101 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1975 | 1 |
Exp 36h | 1.08175 | 1 |
Exp 60h | 1.15178 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02404 | 1 |
Var 0h | 1.07775 | 0.98 |
Var 12h I row2-row1 | 1.08703 | 0.736 |
Var 12h NI row2-row1 | 1.12069 | 1 |
Var 36h I row2-row1 | 0.96852 | 1 |
Var 36h NI row2-row1 | 0.94407 | 0.478 |
Var 60h I row2-row1 | 0.81384 | 0.374 |
Var 60h NI row2-row1 | 0.94172 | 0.932 |
Time course 0hI-0hNI | 1.11309 | 0.63 |
Time course 12hI-12hNI | 1.0233 | 0.876 |
Time course 36hI-36hNI | 1.55188 | 0.006 |
Time course 60hI-60hNI | 1.89235 | 0.042 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07155 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 1.1869 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.22267 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.42301 | 0.185 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98537 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.24854 | 0.14 |
Manapal/WT (break) | 0.92661 | 1 |
Manapal/WT (red) | 0.83823 | 0.274 |
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