Expression of 1-1-2.3.14.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.714730.116
27DAP/17DAP0.854830.694
39DAP/27DAP1.285910.511
41DAP/39DAP0.62380.063
42DAP/41DAP0.941871
43DAP/42DAP1.143911
47DAP/43DAP0.49490.052
52DAP/47DAP1.033880.994
57DAP/52DAP1.400820.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.794040.015
17DAP/reference1.1371
27DAP/reference0.622240.012
39DAP/reference0.671450.04
41DAP/reference0.72850.049
42DAP/reference1.211750.002
43DAP/reference0.812730.023
47DAP/reference0.807680.001
52DAP/reference0.461140.012
57DAP/reference0.61410.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.900980.35
27DAP/17DAP1.011710.98
39DAP/27DAP0.784510.05
41DAP/39DAP1.033090.973
42DAP/41DAP0.945730.662
43DAP/42DAP0.85660.039
47DAP/43DAP1.626670.906
52DAP/47DAP0.552550.058
57DAP/52DAP0.940830.632
57DAP/7DAP0.34060.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.958450.024
17DAP/reference2.190770.006
27DAP/reference1.545820.009
39DAP/reference1.31650.016
41DAP/reference1.609590.012
42DAP/reference1.412710.03
43DAP/reference1.508980.011
47DAP/reference1.253210.155
52DAP/reference1.289980.229
57DAP/reference1.142290.536

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.207070.507
17DAP/reference1.555910.034
27DAP/reference1.437620.083
39DAP/reference0.891420.147
41DAP/reference1.240830.027
42DAP/reference1.542320.011
43DAP/reference0.783010.108
47DAP/reference1.124040.572
52DAP/reference0.546490.003
57DAP/reference0.703170.037

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.627310.015
17DAP/reference1.550440.217
27DAP/reference1.639230.026
39DAP/reference1.875330.009
41DAP/reference1.171470.319
42DAP/reference1.17880.233
43DAP/reference1.281310.084
47DAP/reference0.508360.004
52DAP/reference2.422940.278
57DAP/reference0.980560.534

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.050240.966
26DAP/20DAP2.447320.099
34DAP/26DAP0.740890.272
51DAP/34DAP0.8640.268
52DAP/51DAP1.156020.377
53DAP/52DAP0.902760.581
55DAP/53DAP0.691060.029
57DAP/55DAP1.38730.643
62DAP/57DAP1.06390.868
68DAP/62DAP0.88610.7
68DAP/14DAP1.219041

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.821730.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.99350.863
Mature Green Tomato/Ripe Tomato1.616680.523
Immature Eggplant/Mature Eggplant0.707760.064
Ripe Pepper/Ripe Tomato1.52110.256
Mature Eggplant/Ripe Tomato1.85330.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.894020.736
1-1-2/M821.163781
12-2/M820.82330.955
12-4/M821.107481
1-3/M821.585790.277
2-1-1/M821.050791
2-1/M821.06521
2-6/M821.313540.329
3-2/M820.90619
4-1-1/M821.105221
4-1/M820.9318
4-3-2/M821.827590.262
4-3/M821.797290.268
5-3/M821.240540.572
6-2/M822.433510.235
6-3/M821.072141
7-1/M821.200341
7-2/M821.682340.318
9-3-2/M821.41292

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.064020.277
IL2-6/WTpooled1.004251
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.094261
IL12-4/WTpooled1.001031
IL1-4/WTpooled1.065511
WT/WTpooled1.10890.89

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.95521

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.970321
DC3000/delta hrp 6h1.032150.95
DC3000/delta hrp 12h1.392011
DC3000/delta hrp 24h1.106740.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.329990.042
DC3000 delta B/DC3000 delta AB1.450540.101

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.19751
Exp 36h1.081751
Exp 60h1.151781

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.024041
Var 0h1.077750.98
Var 12h I row2-row11.087030.736
Var 12h NI row2-row11.120691
Var 36h I row2-row10.968521
Var 36h NI row2-row10.944070.478
Var 60h I row2-row10.813840.374
Var 60h NI row2-row10.941720.932
Time course 0hI-0hNI1.113090.63
Time course 12hI-12hNI1.02330.876
Time course 36hI-36hNI1.551880.006
Time course 60hI-60hNI1.892350.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.071550.699
transgenic ySAMdc/azygous control (breaker)1.18690.248
transgenic ySAMdc/azygous control (red)1.222670.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.423010.185

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.985370.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.248540.14
Manapal/WT (break)0.926611
Manapal/WT (red)0.838230.274