Expression of 1-1-2.3.14.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP10.15030.121
27DAP/17DAP1.679250.395
39DAP/27DAP1.490060.118
41DAP/39DAP0.462770.041
42DAP/41DAP0.590630.774
43DAP/42DAP0.886220.801
47DAP/43DAP0.516420.056
52DAP/47DAP0.705870.325
57DAP/52DAP1.087240.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.899690.111
17DAP/reference1.052310.369
27DAP/reference1.07580.357
39DAP/reference1.026760.92
41DAP/reference1.169370.171
42DAP/reference1.002880.501
43DAP/reference1.056570.382
47DAP/reference1.026840.885
52DAP/reference1.03610.8
57DAP/reference1.062770.355

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.361490.036
27DAP/17DAP1.699150.026
39DAP/27DAP0.81120.103
41DAP/39DAP1.18040.895
42DAP/41DAP0.855340.347
43DAP/42DAP0.573650.022
47DAP/43DAP0.729050.02
52DAP/47DAP1.333780.197
57DAP/52DAP0.492230.043
57DAP/7DAP1.296050.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.093290.36
17DAP/reference0.975260.447
27DAP/reference1.047150.551
39DAP/reference1.009521
41DAP/reference0.98610.589
42DAP/reference1.127760.686
43DAP/reference1.364790.048
47DAP/reference1.000741
52DAP/reference0.742550.018
57DAP/reference1.215550.612

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.125390.416
17DAP/reference0.936640.337
27DAP/reference1.01031
39DAP/reference0.936210.33
41DAP/reference0.954090.357
42DAP/reference0.892450.098
43DAP/reference1.101770.304
47DAP/reference0.90820.094
52DAP/reference0.890130.101
57DAP/reference0.862280.092

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.875680.077
17DAP/reference1.087070.39
27DAP/reference1.070810.621
39DAP/reference1.0450.711
41DAP/reference0.959310.512
42DAP/reference0.952370.445
43DAP/reference0.888640.179
47DAP/reference1.362240.034
52DAP/reference0.860390.25
57DAP/reference0.815370.043

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.923221
26DAP/20DAP1.057571
34DAP/26DAP1.573051
51DAP/34DAP0.842470.482
52DAP/51DAP0.738871
53DAP/52DAP0.84170.342
55DAP/53DAP0.694360.052
57DAP/55DAP0.888770.703
62DAP/57DAP1.257560.133
68DAP/62DAP0.842040.543
68DAP/14DAP1.843160.558

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker5.277830.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato9.187310.015
Immature Eggplant/Mature Eggplant0.990011
Ripe Pepper/Ripe Tomato0.495770.224
Mature Eggplant/Ripe Tomato1.941280.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.17457
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.7239
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.635760.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.257960.362
IL12-4/WTpooled1.005711
IL1-4/WTpooled0.98502
WT/WTpooled1.070510.789

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.07941

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.041770.921
DC3000/delta hrp 6h0.87860.95
DC3000/delta hrp 12h0.902441
DC3000/delta hrp 24h0.997741

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.786380.063
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.899171
Exp 36h1.191031
Exp 60h1.041691

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.053411
Var 0h0.847290.933
Var 12h I row2-row11.003581
Var 12h NI row2-row10.909630.713
Var 36h I row2-row10.90430.805
Var 36h NI row2-row10.937550.584
Var 60h I row2-row10.822420.285
Var 60h NI row2-row10.732031
Time course 0hI-0hNI0.96020.821
Time course 12hI-12hNI1.057210.756
Time course 36hI-36hNI1.008141
Time course 60hI-60hNI1.326770.013

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.014930.798
transgenic ySAMdc/azygous control (breaker)1.199440.248
transgenic ySAMdc/azygous control (red)0.981111

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.023020.204

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.385650.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.881211
Manapal/WT (break)0.854250.333
Manapal/WT (red)0.850530.181