Expression of 1-1-2.3.14.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 10.1503 | 0.121 |
27DAP/17DAP | 1.67925 | 0.395 |
39DAP/27DAP | 1.49006 | 0.118 |
41DAP/39DAP | 0.46277 | 0.041 |
42DAP/41DAP | 0.59063 | 0.774 |
43DAP/42DAP | 0.88622 | 0.801 |
47DAP/43DAP | 0.51642 | 0.056 |
52DAP/47DAP | 0.70587 | 0.325 |
57DAP/52DAP | 1.08724 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89969 | 0.111 |
17DAP/reference | 1.05231 | 0.369 |
27DAP/reference | 1.0758 | 0.357 |
39DAP/reference | 1.02676 | 0.92 |
41DAP/reference | 1.16937 | 0.171 |
42DAP/reference | 1.00288 | 0.501 |
43DAP/reference | 1.05657 | 0.382 |
47DAP/reference | 1.02684 | 0.885 |
52DAP/reference | 1.0361 | 0.8 |
57DAP/reference | 1.06277 | 0.355 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.36149 | 0.036 |
27DAP/17DAP | 1.69915 | 0.026 |
39DAP/27DAP | 0.8112 | 0.103 |
41DAP/39DAP | 1.1804 | 0.895 |
42DAP/41DAP | 0.85534 | 0.347 |
43DAP/42DAP | 0.57365 | 0.022 |
47DAP/43DAP | 0.72905 | 0.02 |
52DAP/47DAP | 1.33378 | 0.197 |
57DAP/52DAP | 0.49223 | 0.043 |
57DAP/7DAP | 1.29605 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09329 | 0.36 |
17DAP/reference | 0.97526 | 0.447 |
27DAP/reference | 1.04715 | 0.551 |
39DAP/reference | 1.00952 | 1 |
41DAP/reference | 0.9861 | 0.589 |
42DAP/reference | 1.12776 | 0.686 |
43DAP/reference | 1.36479 | 0.048 |
47DAP/reference | 1.00074 | 1 |
52DAP/reference | 0.74255 | 0.018 |
57DAP/reference | 1.21555 | 0.612 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12539 | 0.416 |
17DAP/reference | 0.93664 | 0.337 |
27DAP/reference | 1.0103 | 1 |
39DAP/reference | 0.93621 | 0.33 |
41DAP/reference | 0.95409 | 0.357 |
42DAP/reference | 0.89245 | 0.098 |
43DAP/reference | 1.10177 | 0.304 |
47DAP/reference | 0.9082 | 0.094 |
52DAP/reference | 0.89013 | 0.101 |
57DAP/reference | 0.86228 | 0.092 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87568 | 0.077 |
17DAP/reference | 1.08707 | 0.39 |
27DAP/reference | 1.07081 | 0.621 |
39DAP/reference | 1.045 | 0.711 |
41DAP/reference | 0.95931 | 0.512 |
42DAP/reference | 0.95237 | 0.445 |
43DAP/reference | 0.88864 | 0.179 |
47DAP/reference | 1.36224 | 0.034 |
52DAP/reference | 0.86039 | 0.25 |
57DAP/reference | 0.81537 | 0.043 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92322 | 1 |
26DAP/20DAP | 1.05757 | 1 |
34DAP/26DAP | 1.57305 | 1 |
51DAP/34DAP | 0.84247 | 0.482 |
52DAP/51DAP | 0.73887 | 1 |
53DAP/52DAP | 0.8417 | 0.342 |
55DAP/53DAP | 0.69436 | 0.052 |
57DAP/55DAP | 0.88877 | 0.703 |
62DAP/57DAP | 1.25756 | 0.133 |
68DAP/62DAP | 0.84204 | 0.543 |
68DAP/14DAP | 1.84316 | 0.558 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 5.27783 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 9.18731 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.99001 | 1 |
Ripe Pepper/Ripe Tomato | 0.49577 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.94128 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.17457 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.7239 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.63576 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.25796 | 0.362 |
IL12-4/WTpooled | 1.00571 | 1 |
IL1-4/WTpooled | 0.98502 | |
WT/WTpooled | 1.07051 | 0.789 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0794 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04177 | 0.921 |
DC3000/delta hrp 6h | 0.8786 | 0.95 |
DC3000/delta hrp 12h | 0.90244 | 1 |
DC3000/delta hrp 24h | 0.99774 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.78638 | 0.063 |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89917 | 1 |
Exp 36h | 1.19103 | 1 |
Exp 60h | 1.04169 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05341 | 1 |
Var 0h | 0.84729 | 0.933 |
Var 12h I row2-row1 | 1.00358 | 1 |
Var 12h NI row2-row1 | 0.90963 | 0.713 |
Var 36h I row2-row1 | 0.9043 | 0.805 |
Var 36h NI row2-row1 | 0.93755 | 0.584 |
Var 60h I row2-row1 | 0.82242 | 0.285 |
Var 60h NI row2-row1 | 0.73203 | 1 |
Time course 0hI-0hNI | 0.9602 | 0.821 |
Time course 12hI-12hNI | 1.05721 | 0.756 |
Time course 36hI-36hNI | 1.00814 | 1 |
Time course 60hI-60hNI | 1.32677 | 0.013 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01493 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 1.19944 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.98111 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02302 | 0.204 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.38565 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88121 | 1 |
Manapal/WT (break) | 0.85425 | 0.333 |
Manapal/WT (red) | 0.85053 | 0.181 |
|
|