Expression of 1-1-2.3.15.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.57058 | 0.588 |
27DAP/17DAP | 1.07073 | 0.853 |
39DAP/27DAP | 1.30654 | 0.825 |
41DAP/39DAP | 1.27148 | 0.545 |
42DAP/41DAP | 0.93847 | 1 |
43DAP/42DAP | 1.1531 | 0.875 |
47DAP/43DAP | 1.40331 | 0.216 |
52DAP/47DAP | 0.84327 | 0.587 |
57DAP/52DAP | 1.09062 | 0.955 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23366 | 0.062 |
17DAP/reference | 1.05467 | 0.606 |
27DAP/reference | 0.94512 | 0.457 |
39DAP/reference | 1.13175 | 0.057 |
41DAP/reference | 1.14052 | 0.265 |
42DAP/reference | 1.13542 | 0.08 |
43DAP/reference | 0.95434 | 0.36 |
47DAP/reference | 1.10289 | 0.419 |
52DAP/reference | 0.97227 | 0.33 |
57DAP/reference | 0.84676 | 0.078 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14333 | 0.699 |
27DAP/17DAP | 0.84336 | 0.537 |
39DAP/27DAP | 0.74434 | 0.064 |
41DAP/39DAP | 1.13599 | 0.896 |
42DAP/41DAP | 0.97891 | 0.795 |
43DAP/42DAP | 0.86526 | 0.256 |
47DAP/43DAP | 0.98128 | 0.919 |
52DAP/47DAP | 1.00354 | 0.979 |
57DAP/52DAP | 0.99136 | 0.841 |
57DAP/7DAP | 0.66977 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99998 | 0.758 |
17DAP/reference | 0.90431 | 0.031 |
27DAP/reference | 0.85364 | 0.012 |
39DAP/reference | 0.91394 | 0.049 |
41DAP/reference | 1.00699 | 1 |
42DAP/reference | 0.86987 | 0.023 |
43DAP/reference | 0.93662 | 0.023 |
47DAP/reference | 0.87258 | 0.101 |
52DAP/reference | 0.92366 | 0.115 |
57DAP/reference | 0.92922 | 0.061 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19802 | 0.304 |
17DAP/reference | 1.48528 | 0.016 |
27DAP/reference | 1.75453 | 0.014 |
39DAP/reference | 1.30864 | 0.035 |
41DAP/reference | 1.11292 | 0.335 |
42DAP/reference | 1.37711 | 0.022 |
43DAP/reference | 1.71114 | 0.055 |
47DAP/reference | 1.35022 | 0.015 |
52DAP/reference | 1.3216 | 0.016 |
57DAP/reference | 1.58899 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99724 | 0.804 |
17DAP/reference | 1.16698 | 0.456 |
27DAP/reference | 0.98839 | 0.691 |
39DAP/reference | 1.06219 | 0.691 |
41DAP/reference | 1.13297 | 0.777 |
42DAP/reference | 1.08359 | 0.961 |
43DAP/reference | 1.09641 | 0.744 |
47DAP/reference | 1.30985 | 0.03 |
52DAP/reference | 0.87933 | 0.184 |
57DAP/reference | 1.1386 | 0.233 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.52621 | 0.966 |
26DAP/20DAP | 1.38523 | 0.165 |
34DAP/26DAP | 1.14997 | 0.819 |
51DAP/34DAP | 1.37123 | 0.164 |
52DAP/51DAP | 1.10319 | 0.367 |
53DAP/52DAP | 1.08988 | 0.608 |
55DAP/53DAP | 1.06129 | 0.938 |
57DAP/55DAP | 0.86115 | 0.356 |
62DAP/57DAP | 1.01897 | 1 |
68DAP/62DAP | 1.04263 | 0.885 |
68DAP/14DAP | 0.53143 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18904 | 0.264 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.03042 | 0.774 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.22626 | |
Mature Eggplant/Ripe Tomato | 0.08404 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 2.11262 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.43509 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.24042 | 0.382 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 2.09958 | 0.512 |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.71786 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.78225 | 0.243 |
IL2-6/WTpooled | 0.94536 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.02295 | 1 |
IL12-4/WTpooled | 0.81035 | 0.566 |
IL1-4/WTpooled | 0.96871 | 1 |
WT/WTpooled | 0.96499 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96336 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05659 | 0.921 |
DC3000/delta hrp 6h | 0.80469 | 0.71 |
DC3000/delta hrp 12h | 1.03421 | 1 |
DC3000/delta hrp 24h | 0.94506 | 0.818 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.91358 | 0.597 |
DC3000 delta B/DC3000 delta AB | 0.75551 | 0.022 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02326 | 1 |
Exp 36h | 1.16131 | 1 |
Exp 60h | 1.10577 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98701 | 1 |
Var 0h | 0.9447 | 1 |
Var 12h I row2-row1 | 0.93039 | 0.705 |
Var 12h NI row2-row1 | 1.08394 | 0.649 |
Var 36h I row2-row1 | 1.22484 | 0.908 |
Var 36h NI row2-row1 | 1.2056 | 1 |
Var 60h I row2-row1 | 0.67271 | 0.287 |
Var 60h NI row2-row1 | 0.8966 | 0.63 |
Time course 0hI-0hNI | 0.887 | 0.222 |
Time course 12hI-12hNI | 1.1153 | 0.373 |
Time course 36hI-36hNI | 1.24841 | 0.031 |
Time course 60hI-60hNI | 1.6005 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90994 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 1.71004 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.37259 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0572 | 0.073 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.42972 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77322 | 0.172 |
Manapal/WT (break) | 0.74158 | 0.333 |
Manapal/WT (red) | 0.94656 | 0.863 |
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