Expression of 1-1-2.3.16.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.980580.83
27DAP/17DAP1.08290.881
39DAP/27DAP0.967140.7
41DAP/39DAP0.913380.655
42DAP/41DAP1.164790.941
43DAP/42DAP1.003290.937
47DAP/43DAP1.053410.979
52DAP/47DAP1.05280.926
57DAP/52DAP1.068850.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.754980.051
17DAP/reference0.69530.008
27DAP/reference0.938020.406
39DAP/reference0.807340.038
41DAP/reference0.564140.008
42DAP/reference0.801920.002
43DAP/reference0.875450.042
47DAP/reference0.971560.418
52DAP/reference1.197930.32
57DAP/reference1.391770.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.007450.847
27DAP/17DAP0.927760.446
39DAP/27DAP1.170290.151
41DAP/39DAP0.920090.793
42DAP/41DAP1.121780.719
43DAP/42DAP1.082680.297
47DAP/43DAP1.239371
52DAP/47DAP1.044190.9
57DAP/52DAP1.048070.874
57DAP/7DAP1.227751

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.029681
17DAP/reference1.237770.147
27DAP/reference1.127980.107
39DAP/reference0.999961
41DAP/reference1.37720.066
42DAP/reference1.323740.174
43DAP/reference1.277350.045
47DAP/reference1.082950.618
52DAP/reference1.304490.058
57DAP/reference1.17750.053

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.762720.028
17DAP/reference0.688920.003
27DAP/reference0.865920.1
39DAP/reference0.822520.021
41DAP/reference0.973490.451
42DAP/reference0.873950.046
43DAP/reference0.668580.006
47DAP/reference0.762910.012
52DAP/reference0.903610.111
57DAP/reference0.747310.011

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.104560.631
17DAP/reference1.037480.956
27DAP/reference1.053350.749
39DAP/reference1.196660.075
41DAP/reference1.071420.939
42DAP/reference1.113160.68
43DAP/reference1.31340.068
47DAP/reference0.979250.509
52DAP/reference0.97850.704
57DAP/reference1.403970.024

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.194590.56
26DAP/20DAP1.081860.753
34DAP/26DAP0.836310.735
51DAP/34DAP0.973870.816
52DAP/51DAP0.963131
53DAP/52DAP0.799270.323
55DAP/53DAP0.899490.544
57DAP/55DAP1.184331
62DAP/57DAP1.011561
68DAP/62DAP1.649150.017
68DAP/14DAP1.595990.113

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.139960.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.437850.075
Mature Green Tomato/Ripe Tomato1.069411
Immature Eggplant/Mature Eggplant0.54881
Ripe Pepper/Ripe Tomato1.733190.256
Mature Eggplant/Ripe Tomato0.619120.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.938250.634
1-1-2/M820.919561
12-2/M820.97080.955
12-4/M821.013071
1-3/M820.884330.378
2-1-1/M821.043140.689
2-1/M821.12606
2-6/M821.196230.395
3-2/M82N/AN/A
4-1-1/M821.019021
4-1/M821.377160.853
4-3-2/M821.06853
4-3/M821.021741
5-3/M820.798640.49
6-2/M821.030691
6-3/M821.095891
7-1/M82N/AN/A
7-2/M821.135241
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooled1.17153

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.136351

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.043160.921
DC3000/delta hrp 6h0.98270.95
DC3000/delta hrp 12h0.977831
DC3000/delta hrp 24h1.134870.283

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.28641
DC3000 delta B/DC3000 delta AB1.204070.265

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.745050.471
Exp 60h1.149310.206

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.967831
Var 0h1.309140.339
Var 12h I row2-row10.946960.39
Var 12h NI row2-row11.106421
Var 36h I row2-row11.291320.601
Var 36h NI row2-row11.07611
Var 60h I row2-row10.795530.306
Var 60h NI row2-row10.893750.572
Time course 0hI-0hNI0.973470.886
Time course 12hI-12hNI1.004080.9
Time course 36hI-36hNI1.138140.19
Time course 60hI-60hNI1.556190.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.892110.314
transgenic ySAMdc/azygous control (breaker)1.070791
transgenic ySAMdc/azygous control (red)1.079930.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.129050.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.755170.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.061261
Manapal/WT (break)0.894331
Manapal/WT (red)0.916080.424