Expression of 1-1-2.3.16.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98058 | 0.83 |
27DAP/17DAP | 1.0829 | 0.881 |
39DAP/27DAP | 0.96714 | 0.7 |
41DAP/39DAP | 0.91338 | 0.655 |
42DAP/41DAP | 1.16479 | 0.941 |
43DAP/42DAP | 1.00329 | 0.937 |
47DAP/43DAP | 1.05341 | 0.979 |
52DAP/47DAP | 1.0528 | 0.926 |
57DAP/52DAP | 1.06885 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75498 | 0.051 |
17DAP/reference | 0.6953 | 0.008 |
27DAP/reference | 0.93802 | 0.406 |
39DAP/reference | 0.80734 | 0.038 |
41DAP/reference | 0.56414 | 0.008 |
42DAP/reference | 0.80192 | 0.002 |
43DAP/reference | 0.87545 | 0.042 |
47DAP/reference | 0.97156 | 0.418 |
52DAP/reference | 1.19793 | 0.32 |
57DAP/reference | 1.39177 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00745 | 0.847 |
27DAP/17DAP | 0.92776 | 0.446 |
39DAP/27DAP | 1.17029 | 0.151 |
41DAP/39DAP | 0.92009 | 0.793 |
42DAP/41DAP | 1.12178 | 0.719 |
43DAP/42DAP | 1.08268 | 0.297 |
47DAP/43DAP | 1.23937 | 1 |
52DAP/47DAP | 1.04419 | 0.9 |
57DAP/52DAP | 1.04807 | 0.874 |
57DAP/7DAP | 1.22775 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02968 | 1 |
17DAP/reference | 1.23777 | 0.147 |
27DAP/reference | 1.12798 | 0.107 |
39DAP/reference | 0.99996 | 1 |
41DAP/reference | 1.3772 | 0.066 |
42DAP/reference | 1.32374 | 0.174 |
43DAP/reference | 1.27735 | 0.045 |
47DAP/reference | 1.08295 | 0.618 |
52DAP/reference | 1.30449 | 0.058 |
57DAP/reference | 1.1775 | 0.053 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76272 | 0.028 |
17DAP/reference | 0.68892 | 0.003 |
27DAP/reference | 0.86592 | 0.1 |
39DAP/reference | 0.82252 | 0.021 |
41DAP/reference | 0.97349 | 0.451 |
42DAP/reference | 0.87395 | 0.046 |
43DAP/reference | 0.66858 | 0.006 |
47DAP/reference | 0.76291 | 0.012 |
52DAP/reference | 0.90361 | 0.111 |
57DAP/reference | 0.74731 | 0.011 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10456 | 0.631 |
17DAP/reference | 1.03748 | 0.956 |
27DAP/reference | 1.05335 | 0.749 |
39DAP/reference | 1.19666 | 0.075 |
41DAP/reference | 1.07142 | 0.939 |
42DAP/reference | 1.11316 | 0.68 |
43DAP/reference | 1.3134 | 0.068 |
47DAP/reference | 0.97925 | 0.509 |
52DAP/reference | 0.9785 | 0.704 |
57DAP/reference | 1.40397 | 0.024 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19459 | 0.56 |
26DAP/20DAP | 1.08186 | 0.753 |
34DAP/26DAP | 0.83631 | 0.735 |
51DAP/34DAP | 0.97387 | 0.816 |
52DAP/51DAP | 0.96313 | 1 |
53DAP/52DAP | 0.79927 | 0.323 |
55DAP/53DAP | 0.89949 | 0.544 |
57DAP/55DAP | 1.18433 | 1 |
62DAP/57DAP | 1.01156 | 1 |
68DAP/62DAP | 1.64915 | 0.017 |
68DAP/14DAP | 1.59599 | 0.113 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.13996 | 0.558 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.43785 | 0.075 |
Mature Green Tomato/Ripe Tomato | 1.06941 | 1 |
Immature Eggplant/Mature Eggplant | 0.54881 | |
Ripe Pepper/Ripe Tomato | 1.73319 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.61912 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93825 | 0.634 |
1-1-2/M82 | 0.91956 | 1 |
12-2/M82 | 0.9708 | 0.955 |
12-4/M82 | 1.01307 | 1 |
1-3/M82 | 0.88433 | 0.378 |
2-1-1/M82 | 1.04314 | 0.689 |
2-1/M82 | 1.12606 | |
2-6/M82 | 1.19623 | 0.395 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.01902 | 1 |
4-1/M82 | 1.37716 | 0.853 |
4-3-2/M82 | 1.06853 | |
4-3/M82 | 1.02174 | 1 |
5-3/M82 | 0.79864 | 0.49 |
6-2/M82 | 1.03069 | 1 |
6-3/M82 | 1.09589 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.13524 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 1.17153 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.13635 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04316 | 0.921 |
DC3000/delta hrp 6h | 0.9827 | 0.95 |
DC3000/delta hrp 12h | 0.97783 | 1 |
DC3000/delta hrp 24h | 1.13487 | 0.283 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.28641 | |
DC3000 delta B/DC3000 delta AB | 1.20407 | 0.265 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.74505 | 0.471 |
Exp 60h | 1.14931 | 0.206 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96783 | 1 |
Var 0h | 1.30914 | 0.339 |
Var 12h I row2-row1 | 0.94696 | 0.39 |
Var 12h NI row2-row1 | 1.10642 | 1 |
Var 36h I row2-row1 | 1.29132 | 0.601 |
Var 36h NI row2-row1 | 1.0761 | 1 |
Var 60h I row2-row1 | 0.79553 | 0.306 |
Var 60h NI row2-row1 | 0.89375 | 0.572 |
Time course 0hI-0hNI | 0.97347 | 0.886 |
Time course 12hI-12hNI | 1.00408 | 0.9 |
Time course 36hI-36hNI | 1.13814 | 0.19 |
Time course 60hI-60hNI | 1.55619 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89211 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.07079 | 1 |
transgenic ySAMdc/azygous control (red) | 1.07993 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.12905 | 0.083 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75517 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.06126 | 1 |
Manapal/WT (break) | 0.89433 | 1 |
Manapal/WT (red) | 0.91608 | 0.424 |
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