Expression of 1-1-2.3.17.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16055 | 0.575 |
27DAP/17DAP | 0.93689 | 0.894 |
39DAP/27DAP | 1.44047 | 0.277 |
41DAP/39DAP | 0.70565 | 0.107 |
42DAP/41DAP | 1.37629 | 0.737 |
43DAP/42DAP | 0.94888 | 0.883 |
47DAP/43DAP | 0.8825 | 0.613 |
52DAP/47DAP | 1.2091 | 0.721 |
57DAP/52DAP | 1.25707 | 0.886 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27664 | 0.028 |
17DAP/reference | 1.07295 | 0.33 |
27DAP/reference | 1.27384 | 0.205 |
39DAP/reference | 1.07248 | 0.108 |
41DAP/reference | 1.45572 | 0.014 |
42DAP/reference | 1.29791 | 0.001 |
43DAP/reference | 0.96723 | 0.594 |
47DAP/reference | 1.15256 | 0.175 |
52DAP/reference | 1.34469 | 0.114 |
57DAP/reference | 1.23638 | 0.344 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1181 | 0.619 |
27DAP/17DAP | 0.94866 | 0.724 |
39DAP/27DAP | 1.01717 | 1 |
41DAP/39DAP | 1.05448 | 0.807 |
42DAP/41DAP | 1.15025 | 0.514 |
43DAP/42DAP | 0.8423 | 0.097 |
47DAP/43DAP | 1.01811 | 0.963 |
52DAP/47DAP | 1.11184 | 0.681 |
57DAP/52DAP | 1.04149 | 0.897 |
57DAP/7DAP | 1.07196 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90509 | 0.361 |
17DAP/reference | 0.89492 | 0.108 |
27DAP/reference | 0.74647 | 0.071 |
39DAP/reference | 1.07899 | 0.74 |
41DAP/reference | 1.45555 | 0.06 |
42DAP/reference | 1.05605 | 1 |
43DAP/reference | 0.88721 | 0.132 |
47DAP/reference | 0.99193 | 1 |
52DAP/reference | 1.09247 | 0.526 |
57DAP/reference | 0.97676 | 0.53 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08061 | 0.438 |
17DAP/reference | 1.23129 | 0.11 |
27DAP/reference | 1.24893 | 0.038 |
39DAP/reference | 1.2216 | 0.013 |
41DAP/reference | 1.27235 | 0.053 |
42DAP/reference | 1.71679 | 0.017 |
43DAP/reference | 1.09293 | 0.605 |
47DAP/reference | 1.38683 | 0.009 |
52DAP/reference | 1.25099 | 0.092 |
57DAP/reference | 1.33183 | 0.236 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91597 | 0.311 |
17DAP/reference | 1.12114 | 0.365 |
27DAP/reference | 1.01829 | 1 |
39DAP/reference | 1.2546 | 0.104 |
41DAP/reference | 1.05629 | 1 |
42DAP/reference | 1.22249 | 0.204 |
43DAP/reference | 1.7185 | 0.009 |
47DAP/reference | 1.31303 | 0.171 |
52DAP/reference | 1.00672 | 0.854 |
57DAP/reference | 1.38322 | 0.068 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.44731 | 0.966 |
26DAP/20DAP | 1.29803 | 0.437 |
34DAP/26DAP | 1.01365 | 1 |
51DAP/34DAP | 0.89248 | 0.436 |
52DAP/51DAP | 0.90654 | 1 |
53DAP/52DAP | 1.15554 | 0.797 |
55DAP/53DAP | 1.40559 | 0.576 |
57DAP/55DAP | 1.27207 | 0.643 |
62DAP/57DAP | 1.22982 | 0.868 |
68DAP/62DAP | 0.87917 | 0.787 |
68DAP/14DAP | 0.95676 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.50126 | 0.034 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.4576 | 0.237 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.00647 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.55386 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.32183 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98786 | |
IL2-6/WTpooled | 1.12438 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.98772 | 1 |
IL12-4/WTpooled | 0.9006 | 1 |
IL1-4/WTpooled | 1.0499 | 1 |
WT/WTpooled | 1.0469 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9735 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.05984 | 1 |
DC3000/delta hrp 24h | 1.8089 | |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.57471 | 0.132 |
DC3000 delta B/DC3000 delta AB | 1.46198 | 0.586 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.19566 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02658 | 1 |
Var 0h | 1.62653 | 0.936 |
Var 12h I row2-row1 | 0.9884 | 1 |
Var 12h NI row2-row1 | 0.97395 | 0.906 |
Var 36h I row2-row1 | 1.14881 | 0.489 |
Var 36h NI row2-row1 | 1.08508 | 1 |
Var 60h I row2-row1 | 0.9885 | 0.832 |
Var 60h NI row2-row1 | 0.99676 | 1 |
Time course 0hI-0hNI | 1.00972 | 0.867 |
Time course 12hI-12hNI | 1.05529 | 0.668 |
Time course 36hI-36hNI | 1.01082 | 0.874 |
Time course 60hI-60hNI | 0.77138 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.7767 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.89197 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.09552 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.75669 | 1 |
Manapal/WT (red) | N/A | N/A |
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