Expression of 1-1-2.3.17.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.160550.575
27DAP/17DAP0.936890.894
39DAP/27DAP1.440470.277
41DAP/39DAP0.705650.107
42DAP/41DAP1.376290.737
43DAP/42DAP0.948880.883
47DAP/43DAP0.88250.613
52DAP/47DAP1.20910.721
57DAP/52DAP1.257070.886

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.276640.028
17DAP/reference1.072950.33
27DAP/reference1.273840.205
39DAP/reference1.072480.108
41DAP/reference1.455720.014
42DAP/reference1.297910.001
43DAP/reference0.967230.594
47DAP/reference1.152560.175
52DAP/reference1.344690.114
57DAP/reference1.236380.344

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.11810.619
27DAP/17DAP0.948660.724
39DAP/27DAP1.017171
41DAP/39DAP1.054480.807
42DAP/41DAP1.150250.514
43DAP/42DAP0.84230.097
47DAP/43DAP1.018110.963
52DAP/47DAP1.111840.681
57DAP/52DAP1.041490.897
57DAP/7DAP1.071961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.905090.361
17DAP/reference0.894920.108
27DAP/reference0.746470.071
39DAP/reference1.078990.74
41DAP/reference1.455550.06
42DAP/reference1.056051
43DAP/reference0.887210.132
47DAP/reference0.991931
52DAP/reference1.092470.526
57DAP/reference0.976760.53

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080610.438
17DAP/reference1.231290.11
27DAP/reference1.248930.038
39DAP/reference1.22160.013
41DAP/reference1.272350.053
42DAP/reference1.716790.017
43DAP/reference1.092930.605
47DAP/reference1.386830.009
52DAP/reference1.250990.092
57DAP/reference1.331830.236

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.915970.311
17DAP/reference1.121140.365
27DAP/reference1.018291
39DAP/reference1.25460.104
41DAP/reference1.056291
42DAP/reference1.222490.204
43DAP/reference1.71850.009
47DAP/reference1.313030.171
52DAP/reference1.006720.854
57DAP/reference1.383220.068

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.447310.966
26DAP/20DAP1.298030.437
34DAP/26DAP1.013651
51DAP/34DAP0.892480.436
52DAP/51DAP0.906541
53DAP/52DAP1.155540.797
55DAP/53DAP1.405590.576
57DAP/55DAP1.272070.643
62DAP/57DAP1.229820.868
68DAP/62DAP0.879170.787
68DAP/14DAP0.956761

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.501260.034

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.45760.237
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.00647
12-2/M82N/AN/A
12-4/M821.55386
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.32183

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.98786
IL2-6/WTpooled1.124380.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.987721
IL12-4/WTpooled0.90061
IL1-4/WTpooled1.04991
WT/WTpooled1.04691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.97351

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.059841
DC3000/delta hrp 24h1.8089

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.574710.132
DC3000 delta B/DC3000 delta AB1.461980.586

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.195661

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.026581
Var 0h1.626530.936
Var 12h I row2-row10.98841
Var 12h NI row2-row10.973950.906
Var 36h I row2-row11.148810.489
Var 36h NI row2-row11.085081
Var 60h I row2-row10.98850.832
Var 60h NI row2-row10.996761
Time course 0hI-0hNI1.009720.867
Time course 12hI-12hNI1.055290.668
Time course 36hI-36hNI1.010820.874
Time course 60hI-60hNI0.771380.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.77670.49
transgenic ySAMdc/azygous control (red)0.891971

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.095521

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.756691
Manapal/WT (red)N/AN/A