Expression of 1-1-2.3.17.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.14290.77
27DAP/17DAP0.89110.751
39DAP/27DAP0.93850.7
41DAP/39DAP0.840820.447
42DAP/41DAP1.035940.992
43DAP/42DAP1.222330.873
47DAP/43DAP0.758990.26
52DAP/47DAP1.137190.96
57DAP/52DAP1.404430.827

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.072731
17DAP/reference1.189010.239
27DAP/reference1.283830.539
39DAP/reference0.960930.611
41DAP/reference1.002641
42DAP/reference1.037071
43DAP/reference0.947260.519
47DAP/reference0.988960.503
52DAP/reference1.219570.286
57DAP/reference1.100740.31

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.937090.56
27DAP/17DAP0.970610.887
39DAP/27DAP0.919070.371
41DAP/39DAP1.054590.781
42DAP/41DAP1.004870.925
43DAP/42DAP1.149120.446
47DAP/43DAP1.051130.857
52DAP/47DAP1.062420.823
57DAP/52DAP1.122280.402
57DAP/7DAP1.136031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.823660.122
17DAP/reference0.870520.295
27DAP/reference0.916870.248
39DAP/reference1.000040.64
41DAP/reference1.007220.741
42DAP/reference0.744250.055
43DAP/reference1.236180.241
47DAP/reference1.084940.901
52DAP/reference1.014820.74
57DAP/reference0.914990.28

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066721
17DAP/reference0.894520.189
27DAP/reference1.000570.663
39DAP/reference1.084871
41DAP/reference1.108240.629
42DAP/reference0.870850.108
43DAP/reference1.015680.657
47DAP/reference0.865290.075
52DAP/reference0.824160.121
57DAP/reference0.965730.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.037810.804
17DAP/reference0.770940.057
27DAP/reference1.048340.727
39DAP/reference0.909580.299
41DAP/reference0.933370.371
42DAP/reference1.385890.023
43DAP/reference1.575270.008
47DAP/reference1.229820.309
52DAP/reference1.147190.979
57DAP/reference1.18960.262

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.085771
26DAP/20DAP0.931890.512
34DAP/26DAP1.17191
51DAP/34DAP1.105220.55
52DAP/51DAP1.143960.808
53DAP/52DAP1.099030.819
55DAP/53DAP1.194660.82
57DAP/55DAP1.176290.805
62DAP/57DAP1.097480.678
68DAP/62DAP0.908140.747
68DAP/14DAP1.12880.785

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.241690.081

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.03919
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.09143
Mature Eggplant/Ripe Tomato0.073710.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.99655
1-1-2/M821.20019
12-2/M821.079311
12-4/M821.017861
1-3/M822.720010.479
2-1-1/M820.88472
2-1/M82N/AN/A
2-6/M820.72576
3-2/M82N/AN/A
4-1-1/M821.245841
4-1/M82N/AN/A
4-3-2/M821.35146
4-3/M821.918211
5-3/M821.08521
6-2/M821.467780.253
6-3/M820.563660.637
7-1/M82N/AN/A
7-2/M821.240731
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.999881
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.788560.31
IL12-4/WTpooled1.156660.624
IL1-4/WTpooled0.878620.457
WT/WTpooled1.067760.855

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.060721

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.959921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.295771
DC3000/delta hrp 24h0.548250.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.871650.513
DC3000 delta B/DC3000 delta AB0.87990.337

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.058621
Var 0h1.085590.98
Var 12h I row2-row10.977390.856
Var 12h NI row2-row11.019021
Var 36h I row2-row10.924391
Var 36h NI row2-row11.310221
Var 60h I row2-row10.918550.374
Var 60h NI row2-row10.975521
Time course 0hI-0hNI1.002361
Time course 12hI-12hNI1.011450.854
Time course 36hI-36hNI0.942720.119
Time course 60hI-60hNI0.775570.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.934041

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.017881
Manapal/WT (red)1.146370.413