Expression of 1-1-2.3.17.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1429 | 0.77 |
27DAP/17DAP | 0.8911 | 0.751 |
39DAP/27DAP | 0.9385 | 0.7 |
41DAP/39DAP | 0.84082 | 0.447 |
42DAP/41DAP | 1.03594 | 0.992 |
43DAP/42DAP | 1.22233 | 0.873 |
47DAP/43DAP | 0.75899 | 0.26 |
52DAP/47DAP | 1.13719 | 0.96 |
57DAP/52DAP | 1.40443 | 0.827 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07273 | 1 |
17DAP/reference | 1.18901 | 0.239 |
27DAP/reference | 1.28383 | 0.539 |
39DAP/reference | 0.96093 | 0.611 |
41DAP/reference | 1.00264 | 1 |
42DAP/reference | 1.03707 | 1 |
43DAP/reference | 0.94726 | 0.519 |
47DAP/reference | 0.98896 | 0.503 |
52DAP/reference | 1.21957 | 0.286 |
57DAP/reference | 1.10074 | 0.31 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93709 | 0.56 |
27DAP/17DAP | 0.97061 | 0.887 |
39DAP/27DAP | 0.91907 | 0.371 |
41DAP/39DAP | 1.05459 | 0.781 |
42DAP/41DAP | 1.00487 | 0.925 |
43DAP/42DAP | 1.14912 | 0.446 |
47DAP/43DAP | 1.05113 | 0.857 |
52DAP/47DAP | 1.06242 | 0.823 |
57DAP/52DAP | 1.12228 | 0.402 |
57DAP/7DAP | 1.13603 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82366 | 0.122 |
17DAP/reference | 0.87052 | 0.295 |
27DAP/reference | 0.91687 | 0.248 |
39DAP/reference | 1.00004 | 0.64 |
41DAP/reference | 1.00722 | 0.741 |
42DAP/reference | 0.74425 | 0.055 |
43DAP/reference | 1.23618 | 0.241 |
47DAP/reference | 1.08494 | 0.901 |
52DAP/reference | 1.01482 | 0.74 |
57DAP/reference | 0.91499 | 0.28 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06672 | 1 |
17DAP/reference | 0.89452 | 0.189 |
27DAP/reference | 1.00057 | 0.663 |
39DAP/reference | 1.08487 | 1 |
41DAP/reference | 1.10824 | 0.629 |
42DAP/reference | 0.87085 | 0.108 |
43DAP/reference | 1.01568 | 0.657 |
47DAP/reference | 0.86529 | 0.075 |
52DAP/reference | 0.82416 | 0.121 |
57DAP/reference | 0.96573 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03781 | 0.804 |
17DAP/reference | 0.77094 | 0.057 |
27DAP/reference | 1.04834 | 0.727 |
39DAP/reference | 0.90958 | 0.299 |
41DAP/reference | 0.93337 | 0.371 |
42DAP/reference | 1.38589 | 0.023 |
43DAP/reference | 1.57527 | 0.008 |
47DAP/reference | 1.22982 | 0.309 |
52DAP/reference | 1.14719 | 0.979 |
57DAP/reference | 1.1896 | 0.262 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08577 | 1 |
26DAP/20DAP | 0.93189 | 0.512 |
34DAP/26DAP | 1.1719 | 1 |
51DAP/34DAP | 1.10522 | 0.55 |
52DAP/51DAP | 1.14396 | 0.808 |
53DAP/52DAP | 1.09903 | 0.819 |
55DAP/53DAP | 1.19466 | 0.82 |
57DAP/55DAP | 1.17629 | 0.805 |
62DAP/57DAP | 1.09748 | 0.678 |
68DAP/62DAP | 0.90814 | 0.747 |
68DAP/14DAP | 1.1288 | 0.785 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.24169 | 0.081 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.03919 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.09143 | |
Mature Eggplant/Ripe Tomato | 0.07371 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99655 | |
1-1-2/M82 | 1.20019 | |
12-2/M82 | 1.07931 | 1 |
12-4/M82 | 1.01786 | 1 |
1-3/M82 | 2.72001 | 0.479 |
2-1-1/M82 | 0.88472 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.72576 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.24584 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.35146 | |
4-3/M82 | 1.91821 | 1 |
5-3/M82 | 1.0852 | 1 |
6-2/M82 | 1.46778 | 0.253 |
6-3/M82 | 0.56366 | 0.637 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.24073 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.99988 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.78856 | 0.31 |
IL12-4/WTpooled | 1.15666 | 0.624 |
IL1-4/WTpooled | 0.87862 | 0.457 |
WT/WTpooled | 1.06776 | 0.855 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06072 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95992 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.29577 | 1 |
DC3000/delta hrp 24h | 0.54825 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.87165 | 0.513 |
DC3000 delta B/DC3000 delta AB | 0.8799 | 0.337 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05862 | 1 |
Var 0h | 1.08559 | 0.98 |
Var 12h I row2-row1 | 0.97739 | 0.856 |
Var 12h NI row2-row1 | 1.01902 | 1 |
Var 36h I row2-row1 | 0.92439 | 1 |
Var 36h NI row2-row1 | 1.31022 | 1 |
Var 60h I row2-row1 | 0.91855 | 0.374 |
Var 60h NI row2-row1 | 0.97552 | 1 |
Time course 0hI-0hNI | 1.00236 | 1 |
Time course 12hI-12hNI | 1.01145 | 0.854 |
Time course 36hI-36hNI | 0.94272 | 0.119 |
Time course 60hI-60hNI | 0.77557 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.93404 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.01788 | 1 |
Manapal/WT (red) | 1.14637 | 0.413 |
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