Expression of 1-1-2.3.19.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.54434 | 0.062 |
27DAP/17DAP | 2.5425 | 0.148 |
39DAP/27DAP | 3.91251 | 0.323 |
41DAP/39DAP | 2.99815 | 0.408 |
42DAP/41DAP | 0.90987 | 1 |
43DAP/42DAP | 1.45321 | 0.985 |
47DAP/43DAP | 0.15495 | 0.032 |
52DAP/47DAP | 0.82757 | 0.543 |
57DAP/52DAP | 0.57975 | 0.619 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99077 | 0.693 |
17DAP/reference | 0.98641 | 0.737 |
27DAP/reference | 0.90868 | 0.265 |
39DAP/reference | 0.95795 | 0.565 |
41DAP/reference | 1.17013 | 0.451 |
42DAP/reference | 1.4704 | 0.041 |
43DAP/reference | 0.92611 | 0.273 |
47DAP/reference | 0.98885 | 0.535 |
52DAP/reference | 0.79507 | 0.013 |
57DAP/reference | 0.90344 | 0.086 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.67723 | 0.211 |
27DAP/17DAP | 0.97334 | 0.821 |
39DAP/27DAP | 5.42299 | 0.047 |
41DAP/39DAP | 5.6146 | 0.005 |
42DAP/41DAP | 0.57389 | 0.007 |
43DAP/42DAP | 0.27591 | 0.02 |
47DAP/43DAP | 1.04876 | 0.926 |
52DAP/47DAP | 1.53889 | 0.816 |
57DAP/52DAP | 0.34845 | 0.125 |
57DAP/7DAP | 0.79941 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96827 | 0.361 |
17DAP/reference | 1.07821 | 0.477 |
27DAP/reference | 1.12798 | 0.131 |
39DAP/reference | 1.12443 | 0.391 |
41DAP/reference | 1.19021 | 0.113 |
42DAP/reference | 1.18798 | 0.1 |
43DAP/reference | 1.26427 | 0.074 |
47DAP/reference | 1.38435 | 0.099 |
52DAP/reference | 1.04644 | 0.732 |
57DAP/reference | 1.0924 | 0.25 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92406 | 0.412 |
17DAP/reference | 1.1327 | 0.092 |
27DAP/reference | 1.17761 | 0.12 |
39DAP/reference | 1.85728 | 0.025 |
41DAP/reference | 1.24007 | 0.096 |
42DAP/reference | 1.4441 | 0.025 |
43DAP/reference | 2.29457 | 0.058 |
47DAP/reference | 2.57849 | 0.016 |
52DAP/reference | 1.27394 | 0.024 |
57DAP/reference | 3.17074 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27495 | 0.046 |
17DAP/reference | 1.32304 | 0.163 |
27DAP/reference | 1.06976 | 0.392 |
39DAP/reference | 1.08832 | 0.546 |
41DAP/reference | 1.06344 | 0.796 |
42DAP/reference | 1.14024 | 0.459 |
43DAP/reference | 0.94651 | 0.246 |
47DAP/reference | 0.97084 | 0.465 |
52DAP/reference | 1.06035 | 0.837 |
57DAP/reference | 1.08168 | 0.501 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.49725 | 0.586 |
26DAP/20DAP | 0.93521 | 1 |
34DAP/26DAP | 1.03829 | 1 |
51DAP/34DAP | 0.81984 | 0.235 |
52DAP/51DAP | 1.07809 | 1 |
53DAP/52DAP | 0.96664 | 0.807 |
55DAP/53DAP | 1.35163 | 0.256 |
57DAP/55DAP | 1.15651 | 0.969 |
62DAP/57DAP | 1.0742 | 1 |
68DAP/62DAP | 0.87499 | 0.29 |
68DAP/14DAP | 0.7881 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 7.6035 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.8357 | 0.323 |
Mature Green Tomato/Ripe Tomato | 20.3845 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.86747 | 0.493 |
Ripe Pepper/Ripe Tomato | 2.15963 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.59254 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.27104 | |
12-2/M82 | 0.41856 | |
12-4/M82 | 1.2864 | 1 |
1-3/M82 | 2.43042 | 0.277 |
2-1-1/M82 | 1.17137 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.29693 | 0.505 |
3-2/M82 | 3.64518 | 0.388 |
4-1-1/M82 | 2.19167 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 5.97565 | 0.246 |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.89143 | 0.467 |
6-2/M82 | 11.7762 | 0.235 |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.5797 | |
9-3-2/M82 | 3.29898 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.28338 | 0.277 |
IL2-6/WTpooled | 1.0305 | 1 |
IL7-5/WTpooled | 1.09794 | 0.792 |
IL7-3/WTpooled | 0.8621 | 0.418 |
IL12-4/WTpooled | 0.99613 | 1 |
IL1-4/WTpooled | 0.97989 | 0.415 |
WT/WTpooled | 1.01669 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.55204 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.26219 | 0.921 |
DC3000/delta hrp 6h | 1.13059 | 1 |
DC3000/delta hrp 12h | 0.84853 | 1 |
DC3000/delta hrp 24h | 2.42965 | 0.025 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.1828 | 0.042 |
DC3000 delta B/DC3000 delta AB | 4.54839 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.2097 | 1 |
Exp 36h | 0.99489 | 1 |
Exp 60h | 1.81308 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03271 | 1 |
Var 0h | 0.82448 | 0.933 |
Var 12h I row2-row1 | 1.08618 | 0.58 |
Var 12h NI row2-row1 | 2.79292 | 0.161 |
Var 36h I row2-row1 | 1.2768 | 0.601 |
Var 36h NI row2-row1 | 0.52959 | 0.522 |
Var 60h I row2-row1 | 0.96431 | 0.582 |
Var 60h NI row2-row1 | 0.75674 | 0.818 |
Time course 0hI-0hNI | 2.0837 | 0.603 |
Time course 12hI-12hNI | 2.15097 | 0.493 |
Time course 36hI-36hNI | 11.909 | 0.004 |
Time course 60hI-60hNI | 89.3648 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.44986 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.05744 | 1 |
transgenic ySAMdc/azygous control (red) | 1.05512 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99452 | 0.784 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.72578 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.82927 | 0.083 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.49253 | 0.36 |
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