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Expression of 1-1-2.3.19.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.544340.062
27DAP/17DAP2.54250.148
39DAP/27DAP3.912510.323
41DAP/39DAP2.998150.408
42DAP/41DAP0.909871
43DAP/42DAP1.453210.985
47DAP/43DAP0.154950.032
52DAP/47DAP0.827570.543
57DAP/52DAP0.579750.619

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.990770.693
17DAP/reference0.986410.737
27DAP/reference0.908680.265
39DAP/reference0.957950.565
41DAP/reference1.170130.451
42DAP/reference1.47040.041
43DAP/reference0.926110.273
47DAP/reference0.988850.535
52DAP/reference0.795070.013
57DAP/reference0.903440.086

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.677230.211
27DAP/17DAP0.973340.821
39DAP/27DAP5.422990.047
41DAP/39DAP5.61460.005
42DAP/41DAP0.573890.007
43DAP/42DAP0.275910.02
47DAP/43DAP1.048760.926
52DAP/47DAP1.538890.816
57DAP/52DAP0.348450.125
57DAP/7DAP0.799411

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968270.361
17DAP/reference1.078210.477
27DAP/reference1.127980.131
39DAP/reference1.124430.391
41DAP/reference1.190210.113
42DAP/reference1.187980.1
43DAP/reference1.264270.074
47DAP/reference1.384350.099
52DAP/reference1.046440.732
57DAP/reference1.09240.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.924060.412
17DAP/reference1.13270.092
27DAP/reference1.177610.12
39DAP/reference1.857280.025
41DAP/reference1.240070.096
42DAP/reference1.44410.025
43DAP/reference2.294570.058
47DAP/reference2.578490.016
52DAP/reference1.273940.024
57DAP/reference3.170740.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.274950.046
17DAP/reference1.323040.163
27DAP/reference1.069760.392
39DAP/reference1.088320.546
41DAP/reference1.063440.796
42DAP/reference1.140240.459
43DAP/reference0.946510.246
47DAP/reference0.970840.465
52DAP/reference1.060350.837
57DAP/reference1.081680.501

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.497250.586
26DAP/20DAP0.935211
34DAP/26DAP1.038291
51DAP/34DAP0.819840.235
52DAP/51DAP1.078091
53DAP/52DAP0.966640.807
55DAP/53DAP1.351630.256
57DAP/55DAP1.156510.969
62DAP/57DAP1.07421
68DAP/62DAP0.874990.29
68DAP/14DAP0.78810.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker7.60350.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.83570.323
Mature Green Tomato/Ripe Tomato20.38450.015
Immature Eggplant/Mature Eggplant0.867470.493
Ripe Pepper/Ripe Tomato2.159630.258
Mature Eggplant/Ripe Tomato0.592541

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.27104N/A
12-2/M820.41856N/A
12-4/M821.28641
1-3/M822.430420.277
2-1-1/M821.17137N/A
2-1/M82N/AN/A
2-6/M821.296930.505
3-2/M823.645180.388
4-1-1/M822.19167N/A
4-1/M82N/AN/A
4-3-2/M825.975650.246
4-3/M82N/AN/A
5-3/M821.891430.467
6-2/M8211.77620.235
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.5797N/A
9-3-2/M823.298980.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.283380.277
IL2-6/WTpooled1.03051
IL7-5/WTpooled1.097940.792
IL7-3/WTpooled0.86210.418
IL12-4/WTpooled0.996131
IL1-4/WTpooled0.979890.415
WT/WTpooled1.016691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.552041

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.262190.921
DC3000/delta hrp 6h1.130591
DC3000/delta hrp 12h0.848531
DC3000/delta hrp 24h2.429650.025

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.18280.042
DC3000 delta B/DC3000 delta AB4.548390.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.20971
Exp 36h0.994891
Exp 60h1.813080.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.032711
Var 0h0.824480.933
Var 12h I row2-row11.086180.58
Var 12h NI row2-row12.792920.161
Var 36h I row2-row11.27680.601
Var 36h NI row2-row10.529590.522
Var 60h I row2-row10.964310.582
Var 60h NI row2-row10.756740.818
Time course 0hI-0hNI2.08370.603
Time course 12hI-12hNI2.150970.493
Time course 36hI-36hNI11.9090.004
Time course 60hI-60hNI89.36480.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.449860.246
transgenic ySAMdc/azygous control (breaker)1.057441
transgenic ySAMdc/azygous control (red)1.055120.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.994520.784

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.725780.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.829270.083
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.492530.36