Expression of 1-1-2.3.19.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.752270.463
27DAP/17DAP1.16720.841
39DAP/27DAP1.904830.181
41DAP/39DAP0.566970.041
42DAP/41DAP1.173830.929
43DAP/42DAP1.183431
47DAP/43DAP1.115580.95
52DAP/47DAP0.916370.619
57DAP/52DAP1.106190.995

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.511030.026
17DAP/reference1.376050.012
27DAP/reference1.295570.132
39DAP/reference1.258670.114
41DAP/reference1.736180.013
42DAP/reference1.30670.002
43DAP/reference1.124420.325
47DAP/reference1.177630.114
52DAP/reference1.207960.04
57DAP/reference1.168290.724

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.097740.049
27DAP/17DAP1.082390.867
39DAP/27DAP1.03871
41DAP/39DAP1.327440.876
42DAP/41DAP1.138190.773
43DAP/42DAP0.816640.127
47DAP/43DAP0.967450.902
52DAP/47DAP1.056751
57DAP/52DAP0.907030.545
57DAP/7DAP1.260440.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.83690.077
17DAP/reference0.907390.082
27DAP/reference0.86070.016
39DAP/reference0.82870.012
41DAP/reference0.861840.079
42DAP/reference0.887380.048
43DAP/reference0.869560.018
47DAP/reference0.876210.293
52DAP/reference0.786520.066
57DAP/reference0.82390.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.368870.038
17DAP/reference1.784080.008
27DAP/reference1.439170.029
39DAP/reference1.225920.05
41DAP/reference1.513810.006
42DAP/reference1.403640.01
43DAP/reference1.82330.01
47DAP/reference1.45320.008
52DAP/reference1.512970.006
57DAP/reference1.787250.009

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.867120.039
17DAP/reference1.138070.474
27DAP/reference0.920110.302
39DAP/reference0.877530.133
41DAP/reference1.024260.754
42DAP/reference1.103760.529
43DAP/reference1.088970.91
47DAP/reference1.269660.013
52DAP/reference0.867160.25
57DAP/reference0.952550.41

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.838110.997
26DAP/20DAP1.374150.608
34DAP/26DAP1.188381
51DAP/34DAP0.891740.305
52DAP/51DAP0.490540.067
53DAP/52DAP0.966410.876
55DAP/53DAP0.764080.048
57DAP/55DAP1.514380.348
62DAP/57DAP1.370670.723
68DAP/62DAP1.290480.919
68DAP/14DAP0.701120.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.255410.026

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.018940.814
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.83786
Mature Eggplant/Ripe Tomato1.097661

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.792680.651
1-1-2/M821.447321
12-2/M820.892740.955
12-4/M821.497211
1-3/M822.187830.248
2-1-1/M820.833240.465
2-1/M82N/AN/A
2-6/M820.961941
3-2/M821.180270.426
4-1-1/M821.270331
4-1/M821.456651
4-3-2/M821.367111
4-3/M821.27691
5-3/M821.22344
6-2/M821.473860.214
6-3/M820.69643
7-1/M821.23373
7-2/M821.126960.282
9-3-2/M821.215540.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.9241
IL7-5/WTpooled0.52445
IL7-3/WTpooled1.901451
IL12-4/WTpooled1.219710.839
IL1-4/WTpooled1.17886
WT/WTpooled1.03021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.232070.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.103440.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.083291
DC3000/delta hrp 24h1.106740.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.13431

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.287911

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.080571
Var 0h1.007981
Var 12h I row2-row10.976530.77
Var 12h NI row2-row10.925640.82
Var 36h I row2-row11.195050.908
Var 36h NI row2-row11.55971
Var 60h I row2-row10.833460.439
Var 60h NI row2-row11.111951
Time course 0hI-0hNI1.092990.537
Time course 12hI-12hNI0.954240.739
Time course 36hI-36hNI1.048031
Time course 60hI-60hNI1.215990.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.808190.251
transgenic ySAMdc/azygous control (red)0.897851

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.880380.064

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.887330.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.184160.134