Expression of 1-1-2.3.19.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.75227 | 0.463 |
27DAP/17DAP | 1.1672 | 0.841 |
39DAP/27DAP | 1.90483 | 0.181 |
41DAP/39DAP | 0.56697 | 0.041 |
42DAP/41DAP | 1.17383 | 0.929 |
43DAP/42DAP | 1.18343 | 1 |
47DAP/43DAP | 1.11558 | 0.95 |
52DAP/47DAP | 0.91637 | 0.619 |
57DAP/52DAP | 1.10619 | 0.995 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.51103 | 0.026 |
17DAP/reference | 1.37605 | 0.012 |
27DAP/reference | 1.29557 | 0.132 |
39DAP/reference | 1.25867 | 0.114 |
41DAP/reference | 1.73618 | 0.013 |
42DAP/reference | 1.3067 | 0.002 |
43DAP/reference | 1.12442 | 0.325 |
47DAP/reference | 1.17763 | 0.114 |
52DAP/reference | 1.20796 | 0.04 |
57DAP/reference | 1.16829 | 0.724 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.09774 | 0.049 |
27DAP/17DAP | 1.08239 | 0.867 |
39DAP/27DAP | 1.0387 | 1 |
41DAP/39DAP | 1.32744 | 0.876 |
42DAP/41DAP | 1.13819 | 0.773 |
43DAP/42DAP | 0.81664 | 0.127 |
47DAP/43DAP | 0.96745 | 0.902 |
52DAP/47DAP | 1.05675 | 1 |
57DAP/52DAP | 0.90703 | 0.545 |
57DAP/7DAP | 1.26044 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8369 | 0.077 |
17DAP/reference | 0.90739 | 0.082 |
27DAP/reference | 0.8607 | 0.016 |
39DAP/reference | 0.8287 | 0.012 |
41DAP/reference | 0.86184 | 0.079 |
42DAP/reference | 0.88738 | 0.048 |
43DAP/reference | 0.86956 | 0.018 |
47DAP/reference | 0.87621 | 0.293 |
52DAP/reference | 0.78652 | 0.066 |
57DAP/reference | 0.8239 | 0.018 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36887 | 0.038 |
17DAP/reference | 1.78408 | 0.008 |
27DAP/reference | 1.43917 | 0.029 |
39DAP/reference | 1.22592 | 0.05 |
41DAP/reference | 1.51381 | 0.006 |
42DAP/reference | 1.40364 | 0.01 |
43DAP/reference | 1.8233 | 0.01 |
47DAP/reference | 1.4532 | 0.008 |
52DAP/reference | 1.51297 | 0.006 |
57DAP/reference | 1.78725 | 0.009 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86712 | 0.039 |
17DAP/reference | 1.13807 | 0.474 |
27DAP/reference | 0.92011 | 0.302 |
39DAP/reference | 0.87753 | 0.133 |
41DAP/reference | 1.02426 | 0.754 |
42DAP/reference | 1.10376 | 0.529 |
43DAP/reference | 1.08897 | 0.91 |
47DAP/reference | 1.26966 | 0.013 |
52DAP/reference | 0.86716 | 0.25 |
57DAP/reference | 0.95255 | 0.41 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.83811 | 0.997 |
26DAP/20DAP | 1.37415 | 0.608 |
34DAP/26DAP | 1.18838 | 1 |
51DAP/34DAP | 0.89174 | 0.305 |
52DAP/51DAP | 0.49054 | 0.067 |
53DAP/52DAP | 0.96641 | 0.876 |
55DAP/53DAP | 0.76408 | 0.048 |
57DAP/55DAP | 1.51438 | 0.348 |
62DAP/57DAP | 1.37067 | 0.723 |
68DAP/62DAP | 1.29048 | 0.919 |
68DAP/14DAP | 0.70112 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.25541 | 0.026 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.01894 | 0.814 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.83786 | |
Mature Eggplant/Ripe Tomato | 1.09766 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.79268 | 0.651 |
1-1-2/M82 | 1.44732 | 1 |
12-2/M82 | 0.89274 | 0.955 |
12-4/M82 | 1.49721 | 1 |
1-3/M82 | 2.18783 | 0.248 |
2-1-1/M82 | 0.83324 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96194 | 1 |
3-2/M82 | 1.18027 | 0.426 |
4-1-1/M82 | 1.27033 | 1 |
4-1/M82 | 1.45665 | 1 |
4-3-2/M82 | 1.36711 | 1 |
4-3/M82 | 1.2769 | 1 |
5-3/M82 | 1.22344 | |
6-2/M82 | 1.47386 | 0.214 |
6-3/M82 | 0.69643 | |
7-1/M82 | 1.23373 | |
7-2/M82 | 1.12696 | 0.282 |
9-3-2/M82 | 1.21554 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.924 | 1 |
IL7-5/WTpooled | 0.52445 | |
IL7-3/WTpooled | 1.90145 | 1 |
IL12-4/WTpooled | 1.21971 | 0.839 |
IL1-4/WTpooled | 1.17886 | |
WT/WTpooled | 1.0302 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.23207 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10344 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.08329 | 1 |
DC3000/delta hrp 24h | 1.10674 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.13431 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.28791 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08057 | 1 |
Var 0h | 1.00798 | 1 |
Var 12h I row2-row1 | 0.97653 | 0.77 |
Var 12h NI row2-row1 | 0.92564 | 0.82 |
Var 36h I row2-row1 | 1.19505 | 0.908 |
Var 36h NI row2-row1 | 1.5597 | 1 |
Var 60h I row2-row1 | 0.83346 | 0.439 |
Var 60h NI row2-row1 | 1.11195 | 1 |
Time course 0hI-0hNI | 1.09299 | 0.537 |
Time course 12hI-12hNI | 0.95424 | 0.739 |
Time course 36hI-36hNI | 1.04803 | 1 |
Time course 60hI-60hNI | 1.21599 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.80819 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.89785 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.88038 | 0.064 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.88733 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.18416 | 0.134 |
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