Expression of 1-1-2.3.2.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.907780.511
27DAP/17DAP0.874170.7
39DAP/27DAP1.636170.176
41DAP/39DAP0.643690.05
42DAP/41DAP1.138370.877
43DAP/42DAP0.965520.91
47DAP/43DAP0.74080.266
52DAP/47DAP1.186570.772
57DAP/52DAP1.093620.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.315370.025
17DAP/reference1.119170.412
27DAP/reference1.091480.415
39DAP/reference1.090910.628
41DAP/reference1.109570.312
42DAP/reference1.401750.001
43DAP/reference1.150360.34
47DAP/reference1.303310.001
52DAP/reference1.018680.768
57DAP/reference1.354590.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.534010.036
27DAP/17DAP1.039780.942
39DAP/27DAP0.74470.079
41DAP/39DAP1.303970.735
42DAP/41DAP1.076530.571
43DAP/42DAP0.729850.022
47DAP/43DAP0.87170.382
52DAP/47DAP2.107020.054
57DAP/52DAP2.630360.045
57DAP/7DAP2.581021

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.841380.027
17DAP/reference1.821250.006
27DAP/reference1.739080.006
39DAP/reference1.769040.006
41DAP/reference1.55930.011
42DAP/reference1.773850.016
43DAP/reference1.50860.015
47DAP/reference1.427610.034
52DAP/reference2.059130.007
57DAP/reference1.978630.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.124980.582
17DAP/reference1.376840.074
27DAP/reference1.910720.014
39DAP/reference1.426410.011
41DAP/reference1.438490.005
42DAP/reference1.505120.008
43DAP/reference1.075320.846
47DAP/reference1.59280.013
52DAP/reference0.982070.5
57DAP/reference1.071780.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.648240.029
17DAP/reference1.154890.631
27DAP/reference1.283790.045
39DAP/reference1.87620.004
41DAP/reference1.311970.008
42DAP/reference1.561510.007
43DAP/reference1.807390.016
47DAP/reference1.048891
52DAP/reference1.580520.032
57DAP/reference2.037890.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.931361
26DAP/20DAP2.840850.855
34DAP/26DAP3.267621
51DAP/34DAP1.282230.911
52DAP/51DAP3.823090.036
53DAP/52DAP0.69490.049
55DAP/53DAP1.238490.097
57DAP/55DAP0.570540.06
62DAP/57DAP2.923520.723
68DAP/62DAP0.737740.406
68DAP/14DAP0.819980.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.354610.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.17690.063
Mature Green Tomato/Ripe Tomato1.585570.015
Immature Eggplant/Mature Eggplant0.793120.067
Ripe Pepper/Ripe Tomato0.897551
Mature Eggplant/Ripe Tomato1.412411

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.004411
1-1-2/M821.024461
12-2/M821.020421
12-4/M821.017041
1-3/M821.329620.277
2-1-1/M820.808930.465
2-1/M820.834430.74
2-6/M821.02010.594
3-2/M821.029841
4-1-1/M821.114481
4-1/M821.046120.512
4-3-2/M821.32919
4-3/M821.327570.268
5-3/M821.073311
6-2/M820.960581
6-3/M821.07881
7-1/M821.049091
7-2/M821.087650.324
9-3-2/M821.091691

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.55884
IL2-6/WTpooled0.71545
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.02373
IL12-4/WTpooled1.048781
IL1-4/WTpooled1.58168
WT/WTpooled0.854041

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.970971

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.114960.692
DC3000/delta hrp 6h0.856550.942
DC3000/delta hrp 12h0.907091
DC3000/delta hrp 24h1.075690.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.048870.333
DC3000 delta B/DC3000 delta AB1.161390.539

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.907521
Exp 36h1.111321
Exp 60h0.968890.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008091
Var 0h0.937011
Var 12h I row2-row10.747830.338
Var 12h NI row2-row11.128551
Var 36h I row2-row11.295520.489
Var 36h NI row2-row11.461591
Var 60h I row2-row10.774770.287
Var 60h NI row2-row10.723640.63
Time course 0hI-0hNI0.81940.111
Time course 12hI-12hNI1.04050.779
Time course 36hI-36hNI1.217270.248
Time course 60hI-60hNI0.981080.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.037350.397
transgenic ySAMdc/azygous control (breaker)1.369820.172
transgenic ySAMdc/azygous control (red)1.139830.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.151390.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.159681

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.882831
Manapal/WT (break)1.02611
Manapal/WT (red)1.144681