Expression of 1-1-2.3.2.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84912 | 0.413 |
27DAP/17DAP | 0.86485 | 0.665 |
39DAP/27DAP | 0.82256 | 0.495 |
41DAP/39DAP | 1.08803 | 0.701 |
42DAP/41DAP | 1.1125 | 1 |
43DAP/42DAP | 0.96278 | 0.892 |
47DAP/43DAP | 0.77858 | 0.377 |
52DAP/47DAP | 1.36493 | 0.487 |
57DAP/52DAP | 0.97534 | 0.966 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02513 | 1 |
17DAP/reference | 1.35991 | 0.013 |
27DAP/reference | 1.27043 | 0.023 |
39DAP/reference | 1.35624 | 0.021 |
41DAP/reference | 1.6781 | 0.009 |
42DAP/reference | 0.79013 | 0.001 |
43DAP/reference | 1.10268 | 0.233 |
47DAP/reference | 0.92964 | 0.207 |
52DAP/reference | 1.21819 | 0.176 |
57DAP/reference | 1.27137 | 0.114 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.25872 | 0.192 |
27DAP/17DAP | 0.72474 | 0.135 |
39DAP/27DAP | 0.75064 | 0.034 |
41DAP/39DAP | 1.09685 | 0.656 |
42DAP/41DAP | 0.86365 | 0.064 |
43DAP/42DAP | 0.78951 | 0.039 |
47DAP/43DAP | 1.06186 | 0.948 |
52DAP/47DAP | 1.01581 | 0.986 |
57DAP/52DAP | 0.88487 | 0.555 |
57DAP/7DAP | 0.54262 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9444 | 0.402 |
17DAP/reference | 0.96515 | 0.338 |
27DAP/reference | 0.80796 | 0.01 |
39DAP/reference | 0.76913 | 0.011 |
41DAP/reference | 0.94574 | 0.375 |
42DAP/reference | 0.73539 | 0.018 |
43DAP/reference | 0.78049 | 0.025 |
47DAP/reference | 0.80869 | 0.128 |
52DAP/reference | 0.80387 | 0.043 |
57DAP/reference | 0.74754 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00072 | 0.884 |
17DAP/reference | 1.19744 | 0.029 |
27DAP/reference | 1.03464 | 1 |
39DAP/reference | 0.9154 | 0.202 |
41DAP/reference | 1.09481 | 0.657 |
42DAP/reference | 0.79492 | 0.017 |
43DAP/reference | 1.22952 | 0.222 |
47DAP/reference | 0.82418 | 0.044 |
52DAP/reference | 1.18723 | 0.032 |
57DAP/reference | 1.204 | 0.755 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83024 | 0.077 |
17DAP/reference | 1.02399 | 0.775 |
27DAP/reference | 0.90288 | 0.133 |
39DAP/reference | 0.92211 | 0.054 |
41DAP/reference | 0.81936 | 0.058 |
42DAP/reference | 0.68236 | 0.02 |
43DAP/reference | 0.78816 | 0.064 |
47DAP/reference | 0.76989 | 0.041 |
52DAP/reference | 0.59791 | 0.056 |
57DAP/reference | 0.91786 | 0.031 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06532 | 0.966 |
26DAP/20DAP | 0.98574 | 1 |
34DAP/26DAP | 0.92914 | 0.874 |
51DAP/34DAP | 1.44716 | 0.036 |
52DAP/51DAP | 0.87302 | 0.151 |
53DAP/52DAP | 0.90847 | 0.535 |
55DAP/53DAP | 0.77672 | 0.12 |
57DAP/55DAP | 1.17159 | 0.492 |
62DAP/57DAP | 0.83793 | 0.466 |
68DAP/62DAP | 1.06308 | 0.939 |
68DAP/14DAP | 1.25147 | 0.328 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.55561 | 0.042 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.47812 | 0.097 |
Mature Green Tomato/Ripe Tomato | 3.18744 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.9706 | 0.72 |
Ripe Pepper/Ripe Tomato | 10.3706 | 0.258 |
Mature Eggplant/Ripe Tomato | 7.50693 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03567 | 1 |
1-1-2/M82 | 0.99308 | 1 |
12-2/M82 | 1.39733 | 0.61 |
12-4/M82 | 1.13737 | 1 |
1-3/M82 | 0.94755 | 1 |
2-1-1/M82 | 1.0211 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.86693 | 0.501 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.96257 | 1 |
4-1/M82 | 1.53845 | |
4-3-2/M82 | 0.60944 | 0.487 |
4-3/M82 | 0.82162 | |
5-3/M82 | 1.10761 | |
6-2/M82 | 0.89649 | |
6-3/M82 | 0.91384 | 1 |
7-1/M82 | 0.93356 | 0.803 |
7-2/M82 | 0.90011 | 0.527 |
9-3-2/M82 | 0.77414 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.86517 | 0.321 |
IL2-6/WTpooled | 1.08279 | 0.531 |
IL7-5/WTpooled | 1.48419 | |
IL7-3/WTpooled | 0.66959 | 0.294 |
IL12-4/WTpooled | 0.81165 | 0.71 |
IL1-4/WTpooled | 0.86162 | 0.562 |
WT/WTpooled | 1.02575 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91756 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10706 | 0.671 |
DC3000/delta hrp 6h | 1.01782 | 0.95 |
DC3000/delta hrp 12h | 1.03295 | 1 |
DC3000/delta hrp 24h | 1.00702 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.42328 | |
DC3000 delta B/DC3000 delta AB | 0.4473 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02793 | 1 |
Exp 36h | 1.02185 | 1 |
Exp 60h | 1.03473 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.1569 | 1 |
Var 0h | 1.08326 | 1 |
Var 12h I row2-row1 | 0.72488 | 0.344 |
Var 12h NI row2-row1 | 1.06045 | 1 |
Var 36h I row2-row1 | 0.89552 | 1 |
Var 36h NI row2-row1 | 0.93739 | 0.743 |
Var 60h I row2-row1 | 1.06236 | 1 |
Var 60h NI row2-row1 | 1.07424 | 1 |
Time course 0hI-0hNI | 1.01083 | 1 |
Time course 12hI-12hNI | 0.99065 | 0.972 |
Time course 36hI-36hNI | 1.07541 | 0.355 |
Time course 60hI-60hNI | 0.41526 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9113 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 0.87942 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.97176 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0593 | 0.234 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.73542 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.01072 | 1 |
Manapal/WT (break) | 0.81718 | 1 |
Manapal/WT (red) | 0.84443 | 0.36 |
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