Expression of 1-1-2.3.2.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.849120.413
27DAP/17DAP0.864850.665
39DAP/27DAP0.822560.495
41DAP/39DAP1.088030.701
42DAP/41DAP1.11251
43DAP/42DAP0.962780.892
47DAP/43DAP0.778580.377
52DAP/47DAP1.364930.487
57DAP/52DAP0.975340.966

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.025131
17DAP/reference1.359910.013
27DAP/reference1.270430.023
39DAP/reference1.356240.021
41DAP/reference1.67810.009
42DAP/reference0.790130.001
43DAP/reference1.102680.233
47DAP/reference0.929640.207
52DAP/reference1.218190.176
57DAP/reference1.271370.114

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.258720.192
27DAP/17DAP0.724740.135
39DAP/27DAP0.750640.034
41DAP/39DAP1.096850.656
42DAP/41DAP0.863650.064
43DAP/42DAP0.789510.039
47DAP/43DAP1.061860.948
52DAP/47DAP1.015810.986
57DAP/52DAP0.884870.555
57DAP/7DAP0.542621

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.94440.402
17DAP/reference0.965150.338
27DAP/reference0.807960.01
39DAP/reference0.769130.011
41DAP/reference0.945740.375
42DAP/reference0.735390.018
43DAP/reference0.780490.025
47DAP/reference0.808690.128
52DAP/reference0.803870.043
57DAP/reference0.747540.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.000720.884
17DAP/reference1.197440.029
27DAP/reference1.034641
39DAP/reference0.91540.202
41DAP/reference1.094810.657
42DAP/reference0.794920.017
43DAP/reference1.229520.222
47DAP/reference0.824180.044
52DAP/reference1.187230.032
57DAP/reference1.2040.755

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.830240.077
17DAP/reference1.023990.775
27DAP/reference0.902880.133
39DAP/reference0.922110.054
41DAP/reference0.819360.058
42DAP/reference0.682360.02
43DAP/reference0.788160.064
47DAP/reference0.769890.041
52DAP/reference0.597910.056
57DAP/reference0.917860.031

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.065320.966
26DAP/20DAP0.985741
34DAP/26DAP0.929140.874
51DAP/34DAP1.447160.036
52DAP/51DAP0.873020.151
53DAP/52DAP0.908470.535
55DAP/53DAP0.776720.12
57DAP/55DAP1.171590.492
62DAP/57DAP0.837930.466
68DAP/62DAP1.063080.939
68DAP/14DAP1.251470.328

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.555610.042

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.478120.097
Mature Green Tomato/Ripe Tomato3.187440.017
Immature Eggplant/Mature Eggplant0.97060.72
Ripe Pepper/Ripe Tomato10.37060.258
Mature Eggplant/Ripe Tomato7.506930.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.035671
1-1-2/M820.993081
12-2/M821.397330.61
12-4/M821.137371
1-3/M820.947551
2-1-1/M821.0211
2-1/M82N/AN/A
2-6/M820.866930.501
3-2/M82N/AN/A
4-1-1/M820.962571
4-1/M821.53845
4-3-2/M820.609440.487
4-3/M820.82162
5-3/M821.10761
6-2/M820.89649
6-3/M820.913841
7-1/M820.933560.803
7-2/M820.900110.527
9-3-2/M820.774140.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.865170.321
IL2-6/WTpooled1.082790.531
IL7-5/WTpooled1.48419
IL7-3/WTpooled0.669590.294
IL12-4/WTpooled0.811650.71
IL1-4/WTpooled0.861620.562
WT/WTpooled1.025751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.917560.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.107060.671
DC3000/delta hrp 6h1.017820.95
DC3000/delta hrp 12h1.032951
DC3000/delta hrp 24h1.007020.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.42328
DC3000 delta B/DC3000 delta AB0.44730.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.027931
Exp 36h1.021851
Exp 60h1.034731

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.15691
Var 0h1.083261
Var 12h I row2-row10.724880.344
Var 12h NI row2-row11.060451
Var 36h I row2-row10.895521
Var 36h NI row2-row10.937390.743
Var 60h I row2-row11.062361
Var 60h NI row2-row11.074241
Time course 0hI-0hNI1.010831
Time course 12hI-12hNI0.990650.972
Time course 36hI-36hNI1.075410.355
Time course 60hI-60hNI0.415260.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.91130.362
transgenic ySAMdc/azygous control (breaker)0.879420.49
transgenic ySAMdc/azygous control (red)0.971761

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.05930.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.735420.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.010721
Manapal/WT (break)0.817181
Manapal/WT (red)0.844430.36