Expression of 1-1-2.3.2.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.42747 | 0.183 |
27DAP/17DAP | 1.00857 | 1 |
39DAP/27DAP | 1.26346 | 0.444 |
41DAP/39DAP | 0.60121 | 0.06 |
42DAP/41DAP | 0.98582 | 1 |
43DAP/42DAP | 1.06448 | 1 |
47DAP/43DAP | 1.44701 | 0.269 |
52DAP/47DAP | 0.78892 | 0.54 |
57DAP/52DAP | 1.23339 | 0.962 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87824 | 0.217 |
17DAP/reference | 1.20803 | 0.508 |
27DAP/reference | 2.80606 | 0.007 |
39DAP/reference | 1.98336 | 0.012 |
41DAP/reference | 1.49863 | 0.013 |
42DAP/reference | 1.17192 | 0.023 |
43DAP/reference | 0.85055 | 0.043 |
47DAP/reference | 1.01438 | 1 |
52DAP/reference | 0.93195 | 0.36 |
57DAP/reference | 1.04031 | 0.744 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88306 | 0.484 |
27DAP/17DAP | 0.81057 | 0.446 |
39DAP/27DAP | 1.0236 | 0.845 |
41DAP/39DAP | 1.12419 | 0.774 |
42DAP/41DAP | 0.95173 | 0.695 |
43DAP/42DAP | 0.63848 | 0.025 |
47DAP/43DAP | 0.92215 | 0.588 |
52DAP/47DAP | 1.4187 | 0.167 |
57DAP/52DAP | 1.09389 | 0.759 |
57DAP/7DAP | 0.47991 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85528 | 0.088 |
17DAP/reference | 0.92099 | 0.22 |
27DAP/reference | 0.9548 | 0.375 |
39DAP/reference | 1.04749 | 0.411 |
41DAP/reference | 0.92106 | 0.203 |
42DAP/reference | 0.83374 | 0.033 |
43DAP/reference | 0.87817 | 0.266 |
47DAP/reference | 0.8448 | 0.222 |
52DAP/reference | 0.93403 | 0.232 |
57DAP/reference | 1.01235 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83495 | 0.119 |
17DAP/reference | 0.84164 | 0.077 |
27DAP/reference | 0.92009 | 0.304 |
39DAP/reference | 1.10406 | 0.978 |
41DAP/reference | 0.89004 | 0.11 |
42DAP/reference | 0.91193 | 0.189 |
43DAP/reference | 0.92464 | 0.385 |
47DAP/reference | 0.8624 | 0.113 |
52DAP/reference | 3.54541 | 0.702 |
57DAP/reference | 0.81537 | 0.144 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73427 | 0.043 |
17DAP/reference | 0.93374 | 0.508 |
27DAP/reference | 0.91415 | 0.319 |
39DAP/reference | 1.00374 | 0.755 |
41DAP/reference | 1.08555 | 0.486 |
42DAP/reference | 0.9751 | 0.671 |
43DAP/reference | 0.99441 | 0.712 |
47DAP/reference | 0.74695 | 0.038 |
52DAP/reference | 0.74338 | 0.096 |
57DAP/reference | 1.34675 | 0.04 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.27156 | 0.966 |
26DAP/20DAP | 1.16823 | 0.558 |
34DAP/26DAP | 0.92172 | 0.857 |
51DAP/34DAP | 0.87701 | 0.442 |
52DAP/51DAP | 1.24201 | 0.163 |
53DAP/52DAP | 0.79066 | 0.095 |
55DAP/53DAP | 1.11012 | 0.722 |
57DAP/55DAP | 0.77826 | 0.366 |
62DAP/57DAP | 1.59563 | 0.047 |
68DAP/62DAP | 1.28796 | 0.808 |
68DAP/14DAP | 0.74916 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.64945 | 0.024 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.25678 | 0.063 |
Mature Green Tomato/Ripe Tomato | 3.90132 | 0.015 |
Immature Eggplant/Mature Eggplant | 1.12584 | 0.136 |
Ripe Pepper/Ripe Tomato | 1.86213 | 1 |
Mature Eggplant/Ripe Tomato | 2.37086 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.75112 | 0.402 |
1-1-2/M82 | 1.54215 | 1 |
12-2/M82 | 1.34051 | 1 |
12-4/M82 | 0.8817 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.02627 | 0.764 |
2-1/M82 | 0.57253 | |
2-6/M82 | 1.0451 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.62529 | 0.977 |
4-1/M82 | 0.90193 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 2.71594 | 0.268 |
5-3/M82 | 0.74366 | 0.364 |
6-2/M82 | 0.79829 | 0.497 |
6-3/M82 | 0.97349 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.4704 | 0.302 |
9-3-2/M82 | 1.54058 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.038 | 0.277 |
IL2-6/WTpooled | 1.01626 | |
IL7-5/WTpooled | 0.79937 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.91144 | 1 |
IL1-4/WTpooled | 1.89513 | 1 |
WT/WTpooled | 2.64668 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96259 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05569 | 0.921 |
DC3000/delta hrp 6h | 1.14041 | 1 |
DC3000/delta hrp 12h | 1.68544 | 1 |
DC3000/delta hrp 24h | 0.64916 | 0.04 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.9238 | 0.161 |
DC3000 delta B/DC3000 delta AB | 1.35705 | 0.179 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.78256 | 1 |
Exp 36h | 0.9724 | 0.943 |
Exp 60h | 0.61145 | 0.278 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98782 | 1 |
Var 0h | 0.94676 | 1 |
Var 12h I row2-row1 | 0.68896 | 0.357 |
Var 12h NI row2-row1 | 1.27047 | 0.281 |
Var 36h I row2-row1 | 1.0667 | 1 |
Var 36h NI row2-row1 | 0.73627 | 0.478 |
Var 60h I row2-row1 | 0.80307 | 0.582 |
Var 60h NI row2-row1 | 0.93259 | 1 |
Time course 0hI-0hNI | 1.0043 | 1 |
Time course 12hI-12hNI | 0.86727 | 0.173 |
Time course 36hI-36hNI | 1.13039 | 0.101 |
Time course 60hI-60hNI | 1.74398 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93779 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 0.77532 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.87953 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.45982 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.23735 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.51015 | 0.172 |
Manapal/WT (break) | 0.59633 | 0.262 |
Manapal/WT (red) | 1.1263 | 0.413 |
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