Expression of 1-1-2.3.2.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.427470.183
27DAP/17DAP1.008571
39DAP/27DAP1.263460.444
41DAP/39DAP0.601210.06
42DAP/41DAP0.985821
43DAP/42DAP1.064481
47DAP/43DAP1.447010.269
52DAP/47DAP0.788920.54
57DAP/52DAP1.233390.962

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.878240.217
17DAP/reference1.208030.508
27DAP/reference2.806060.007
39DAP/reference1.983360.012
41DAP/reference1.498630.013
42DAP/reference1.171920.023
43DAP/reference0.850550.043
47DAP/reference1.014381
52DAP/reference0.931950.36
57DAP/reference1.040310.744

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.883060.484
27DAP/17DAP0.810570.446
39DAP/27DAP1.02360.845
41DAP/39DAP1.124190.774
42DAP/41DAP0.951730.695
43DAP/42DAP0.638480.025
47DAP/43DAP0.922150.588
52DAP/47DAP1.41870.167
57DAP/52DAP1.093890.759
57DAP/7DAP0.479911

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.855280.088
17DAP/reference0.920990.22
27DAP/reference0.95480.375
39DAP/reference1.047490.411
41DAP/reference0.921060.203
42DAP/reference0.833740.033
43DAP/reference0.878170.266
47DAP/reference0.84480.222
52DAP/reference0.934030.232
57DAP/reference1.012351

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.834950.119
17DAP/reference0.841640.077
27DAP/reference0.920090.304
39DAP/reference1.104060.978
41DAP/reference0.890040.11
42DAP/reference0.911930.189
43DAP/reference0.924640.385
47DAP/reference0.86240.113
52DAP/reference3.545410.702
57DAP/reference0.815370.144

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.734270.043
17DAP/reference0.933740.508
27DAP/reference0.914150.319
39DAP/reference1.003740.755
41DAP/reference1.085550.486
42DAP/reference0.97510.671
43DAP/reference0.994410.712
47DAP/reference0.746950.038
52DAP/reference0.743380.096
57DAP/reference1.346750.04

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.271560.966
26DAP/20DAP1.168230.558
34DAP/26DAP0.921720.857
51DAP/34DAP0.877010.442
52DAP/51DAP1.242010.163
53DAP/52DAP0.790660.095
55DAP/53DAP1.110120.722
57DAP/55DAP0.778260.366
62DAP/57DAP1.595630.047
68DAP/62DAP1.287960.808
68DAP/14DAP0.749160.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.649450.024

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.256780.063
Mature Green Tomato/Ripe Tomato3.901320.015
Immature Eggplant/Mature Eggplant1.125840.136
Ripe Pepper/Ripe Tomato1.862131
Mature Eggplant/Ripe Tomato2.370860.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.751120.402
1-1-2/M821.542151
12-2/M821.340511
12-4/M820.88171
1-3/M82N/AN/A
2-1-1/M821.026270.764
2-1/M820.57253
2-6/M821.04511
3-2/M82N/AN/A
4-1-1/M821.625290.977
4-1/M820.90193
4-3-2/M82N/AN/A
4-3/M822.715940.268
5-3/M820.743660.364
6-2/M820.798290.497
6-3/M820.973491
7-1/M82N/AN/A
7-2/M821.47040.302
9-3-2/M821.540581

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.0380.277
IL2-6/WTpooled1.01626
IL7-5/WTpooled0.79937
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.911441
IL1-4/WTpooled1.895131
WT/WTpooled2.646681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.962591

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.055690.921
DC3000/delta hrp 6h1.140411
DC3000/delta hrp 12h1.685441
DC3000/delta hrp 24h0.649160.04

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.92380.161
DC3000 delta B/DC3000 delta AB1.357050.179

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.782561
Exp 36h0.97240.943
Exp 60h0.611450.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987821
Var 0h0.946761
Var 12h I row2-row10.688960.357
Var 12h NI row2-row11.270470.281
Var 36h I row2-row11.06671
Var 36h NI row2-row10.736270.478
Var 60h I row2-row10.803070.582
Var 60h NI row2-row10.932591
Time course 0hI-0hNI1.00431
Time course 12hI-12hNI0.867270.173
Time course 36hI-36hNI1.130390.101
Time course 60hI-60hNI1.743980.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.937790.377
transgenic ySAMdc/azygous control (breaker)0.775320.251
transgenic ySAMdc/azygous control (red)0.879531

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.459820.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.237351

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.510150.172
Manapal/WT (break)0.596330.262
Manapal/WT (red)1.12630.413