Expression of 1-1-2.3.20.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.75690.221
27DAP/17DAP1.269310.755
39DAP/27DAP1.003040.749
41DAP/39DAP1.245560.108
42DAP/41DAP1.1830.856
43DAP/42DAP1.05271
47DAP/43DAP1.150290.269
52DAP/47DAP1.083390.989
57DAP/52DAP1.026861

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.966880.578
17DAP/reference1.141030.083
27DAP/reference1.071450.735
39DAP/reference1.070130.722
41DAP/reference0.927060.154
42DAP/reference0.929020.107
43DAP/reference1.004660.924
47DAP/reference0.892830.322
52DAP/reference0.815120.244
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.811090.201
27DAP/17DAPN/AN/A
39DAP/27DAP1.194090.465
41DAP/39DAP0.673810.347
42DAP/41DAP0.996110.721
43DAP/42DAP1.054491
47DAP/43DAP0.937690.833
52DAP/47DAP1.173820.589
57DAP/52DAP1.155080.657
57DAP/7DAP0.983531

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.236730.11
17DAP/reference1.393270.013
27DAP/reference1.56550.008
39DAP/reference2.082370.005
41DAP/reference1.869520.015
42DAP/reference2.269690.006
43DAP/reference1.914980.007
47DAP/reference1.191230.468
52DAP/reference1.486120.036
57DAP/reference1.80390.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.038530.951
17DAP/reference0.996880.642
27DAP/reference0.907570.366
39DAP/reference0.883290.189
41DAP/reference0.940610.291
42DAP/reference1.184611
43DAP/reference1.191470.997
47DAP/reference0.904390.227
52DAP/reference0.911210.171
57DAP/reference1.064580.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.119280.303
17DAP/reference0.945310.519
27DAP/reference1.347090.021
39DAP/reference1.160040.043
41DAP/reference1.138760.343
42DAP/reference1.405120.06
43DAP/reference1.191830.026
47DAP/reference0.906570.191
52DAP/reference1.836370.094
57DAP/reference1.35020.939

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.305230.966
26DAP/20DAP1.6892
34DAP/26DAP1.354450.542
51DAP/34DAP0.44405
52DAP/51DAP1.030171
53DAP/52DAP1.123010.935
55DAP/53DAP1.093270.908
57DAP/55DAP1.190090.986
62DAP/57DAP1.116070.515
68DAP/62DAP0.970960.863
68DAP/14DAP0.979931

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.546360.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.634550.02
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.48202
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.90716
12-2/M82N/AN/A
12-4/M820.88116
1-3/M82N/AN/A
2-1-1/M821.51654
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.146331
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.89078
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.07501
IL2-6/WTpooled1.46597
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.08191
WT/WTpooled1.009591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.4502

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.095230.921
DC3000/delta hrp 6h1.11961
DC3000/delta hrp 12h1.092991
DC3000/delta hrp 24h0.90770.246

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB3.39292

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.381470.693
Exp 60h1.554170.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.89505
Var 0hN/AN/A
Var 12h I row2-row10.954370.948
Var 12h NI row2-row10.907180.906
Var 36h I row2-row11.44123
Var 36h NI row2-row12.405761
Var 60h I row2-row11.09894
Var 60h NI row2-row12.113841
Time course 0hI-0hNI0.891250.555
Time course 12hI-12hNI0.940490.725
Time course 36hI-36hNI0.823260.312
Time course 60hI-60hNI0.661050.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.310270.312
transgenic ySAMdc/azygous control (breaker)0.567680.134
transgenic ySAMdc/azygous control (red)0.972751

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.087440.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.060950.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.119620.307
Manapal/WT (break)1.123671
Manapal/WT (red)0.954770.728