Expression of 1-1-2.3.20.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7569 | 0.221 |
27DAP/17DAP | 1.26931 | 0.755 |
39DAP/27DAP | 1.00304 | 0.749 |
41DAP/39DAP | 1.24556 | 0.108 |
42DAP/41DAP | 1.183 | 0.856 |
43DAP/42DAP | 1.0527 | 1 |
47DAP/43DAP | 1.15029 | 0.269 |
52DAP/47DAP | 1.08339 | 0.989 |
57DAP/52DAP | 1.02686 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96688 | 0.578 |
17DAP/reference | 1.14103 | 0.083 |
27DAP/reference | 1.07145 | 0.735 |
39DAP/reference | 1.07013 | 0.722 |
41DAP/reference | 0.92706 | 0.154 |
42DAP/reference | 0.92902 | 0.107 |
43DAP/reference | 1.00466 | 0.924 |
47DAP/reference | 0.89283 | 0.322 |
52DAP/reference | 0.81512 | 0.244 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81109 | 0.201 |
27DAP/17DAP | N/A | N/A |
39DAP/27DAP | 1.19409 | 0.465 |
41DAP/39DAP | 0.67381 | 0.347 |
42DAP/41DAP | 0.99611 | 0.721 |
43DAP/42DAP | 1.05449 | 1 |
47DAP/43DAP | 0.93769 | 0.833 |
52DAP/47DAP | 1.17382 | 0.589 |
57DAP/52DAP | 1.15508 | 0.657 |
57DAP/7DAP | 0.98353 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23673 | 0.11 |
17DAP/reference | 1.39327 | 0.013 |
27DAP/reference | 1.5655 | 0.008 |
39DAP/reference | 2.08237 | 0.005 |
41DAP/reference | 1.86952 | 0.015 |
42DAP/reference | 2.26969 | 0.006 |
43DAP/reference | 1.91498 | 0.007 |
47DAP/reference | 1.19123 | 0.468 |
52DAP/reference | 1.48612 | 0.036 |
57DAP/reference | 1.8039 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03853 | 0.951 |
17DAP/reference | 0.99688 | 0.642 |
27DAP/reference | 0.90757 | 0.366 |
39DAP/reference | 0.88329 | 0.189 |
41DAP/reference | 0.94061 | 0.291 |
42DAP/reference | 1.18461 | 1 |
43DAP/reference | 1.19147 | 0.997 |
47DAP/reference | 0.90439 | 0.227 |
52DAP/reference | 0.91121 | 0.171 |
57DAP/reference | 1.06458 | 0.593 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11928 | 0.303 |
17DAP/reference | 0.94531 | 0.519 |
27DAP/reference | 1.34709 | 0.021 |
39DAP/reference | 1.16004 | 0.043 |
41DAP/reference | 1.13876 | 0.343 |
42DAP/reference | 1.40512 | 0.06 |
43DAP/reference | 1.19183 | 0.026 |
47DAP/reference | 0.90657 | 0.191 |
52DAP/reference | 1.83637 | 0.094 |
57DAP/reference | 1.3502 | 0.939 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.30523 | 0.966 |
26DAP/20DAP | 1.6892 | |
34DAP/26DAP | 1.35445 | 0.542 |
51DAP/34DAP | 0.44405 | |
52DAP/51DAP | 1.03017 | 1 |
53DAP/52DAP | 1.12301 | 0.935 |
55DAP/53DAP | 1.09327 | 0.908 |
57DAP/55DAP | 1.19009 | 0.986 |
62DAP/57DAP | 1.11607 | 0.515 |
68DAP/62DAP | 0.97096 | 0.863 |
68DAP/14DAP | 0.97993 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.54636 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.63455 | 0.02 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.48202 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.90716 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.88116 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.51654 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.14633 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.89078 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.07501 | |
IL2-6/WTpooled | 1.46597 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.08191 | |
WT/WTpooled | 1.00959 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.4502 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09523 | 0.921 |
DC3000/delta hrp 6h | 1.1196 | 1 |
DC3000/delta hrp 12h | 1.09299 | 1 |
DC3000/delta hrp 24h | 0.9077 | 0.246 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 3.39292 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.38147 | 0.693 |
Exp 60h | 1.55417 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.89505 | |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.95437 | 0.948 |
Var 12h NI row2-row1 | 0.90718 | 0.906 |
Var 36h I row2-row1 | 1.44123 | |
Var 36h NI row2-row1 | 2.40576 | 1 |
Var 60h I row2-row1 | 1.09894 | |
Var 60h NI row2-row1 | 2.11384 | 1 |
Time course 0hI-0hNI | 0.89125 | 0.555 |
Time course 12hI-12hNI | 0.94049 | 0.725 |
Time course 36hI-36hNI | 0.82326 | 0.312 |
Time course 60hI-60hNI | 0.66105 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.31027 | 0.312 |
transgenic ySAMdc/azygous control (breaker) | 0.56768 | 0.134 |
transgenic ySAMdc/azygous control (red) | 0.97275 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08744 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06095 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.11962 | 0.307 |
Manapal/WT (break) | 1.12367 | 1 |
Manapal/WT (red) | 0.95477 | 0.728 |
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