Expression of 1-1-2.3.20.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.869650.464
27DAP/17DAP1.372180.728
39DAP/27DAP0.803340.522
41DAP/39DAP1.534540.483
42DAP/41DAP1.118021
43DAP/42DAP1.267490.974
47DAP/43DAP1.254470.809
52DAP/47DAP1.048510.984
57DAP/52DAP0.968290.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.916150.432
17DAP/reference1.298220.064
27DAP/reference1.042680.759
39DAP/reference0.966860.874
41DAP/reference1.36710.421
42DAP/reference0.708930.007
43DAP/reference1.442690.617
47DAP/reference0.777190.098
52DAP/reference1.037891
57DAP/reference0.6570.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP1.24104
39DAP/27DAP1.910920.171
41DAP/39DAP1.017591
42DAP/41DAP1.269091
43DAP/42DAP1.009711
47DAP/43DAP1.150270.901
52DAP/47DAP1.211650.494
57DAP/52DAP1.086660.856
57DAP/7DAP1.130381

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934770.063
17DAP/reference0.744670.011
27DAP/reference0.705010.01
39DAP/reference0.867880.073
41DAP/reference0.812270.05
42DAP/reference0.795610.02
43DAP/reference0.805140.013
47DAP/reference0.855760.168
52DAP/reference0.822510.017
57DAP/reference0.888930.02

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.002330.869
17DAP/reference0.947270.434
27DAP/reference0.858420.203
39DAP/reference0.808980.097
41DAP/reference0.851730.164
42DAP/reference0.819640.189
43DAP/reference0.997520.748
47DAP/reference1.091430.731
52DAP/reference1.015321
57DAP/reference0.925450.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.813550.027
17DAP/reference0.937070.407
27DAP/reference0.778340.021
39DAP/reference0.833830.043
41DAP/reference0.805770.031
42DAP/reference0.862220.172
43DAP/reference0.832950.15
47DAP/reference0.942690.278
52DAP/reference0.906760.472
57DAP/reference0.668980.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.086130.966
26DAP/20DAP1.299120.534
34DAP/26DAP1.102620.819
51DAP/34DAP0.904920.419
52DAP/51DAP0.866291
53DAP/52DAP1.245820.921
55DAP/53DAP1.360550.46
57DAP/55DAP1.165020.841
62DAP/57DAP0.978270.994
68DAP/62DAP0.818480.505
68DAP/14DAP0.753890.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.160980.607

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.65921
Mature Green Tomato/Ripe Tomato0.587450.029
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato2.6896
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.95082
12-2/M82N/AN/A
12-4/M820.49688
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.950581
4-1-1/M82N/AN/A
4-1/M820.70327
4-3-2/M820.633720.487
4-3/M82N/AN/A
5-3/M820.981311
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.6636
7-2/M82N/AN/A
9-3-2/M820.736160.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.288750.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.083841
IL12-4/WTpooled0.797660.71
IL1-4/WTpooled0.916220.834
WT/WTpooled0.911341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.41303

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.967451
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.019861
DC3000/delta hrp 24h0.90126

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h0.836340.879
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.92067
Var 0hN/AN/A
Var 12h I row2-row11.0580.202
Var 12h NI row2-row10.939090.906
Var 36h I row2-row11.10081
Var 36h NI row2-row11.897911
Var 60h I row2-row10.922810.582
Var 60h NI row2-row10.553270.408
Time course 0hI-0hNI0.843820.247
Time course 12hI-12hNI1.041820.82
Time course 36hI-36hNI1.112360.881
Time course 60hI-60hNI1.214510.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.061670.384
transgenic ySAMdc/azygous control (breaker)1.169810.178
transgenic ySAMdc/azygous control (red)1.01460.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.972930.471

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.038161

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.88481
Manapal/WT (red)1.202580.413