Expression of 1-1-2.3.20.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86965 | 0.464 |
27DAP/17DAP | 1.37218 | 0.728 |
39DAP/27DAP | 0.80334 | 0.522 |
41DAP/39DAP | 1.53454 | 0.483 |
42DAP/41DAP | 1.11802 | 1 |
43DAP/42DAP | 1.26749 | 0.974 |
47DAP/43DAP | 1.25447 | 0.809 |
52DAP/47DAP | 1.04851 | 0.984 |
57DAP/52DAP | 0.96829 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91615 | 0.432 |
17DAP/reference | 1.29822 | 0.064 |
27DAP/reference | 1.04268 | 0.759 |
39DAP/reference | 0.96686 | 0.874 |
41DAP/reference | 1.3671 | 0.421 |
42DAP/reference | 0.70893 | 0.007 |
43DAP/reference | 1.44269 | 0.617 |
47DAP/reference | 0.77719 | 0.098 |
52DAP/reference | 1.03789 | 1 |
57DAP/reference | 0.657 | 0.009 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | N/A | N/A |
27DAP/17DAP | 1.24104 | |
39DAP/27DAP | 1.91092 | 0.171 |
41DAP/39DAP | 1.01759 | 1 |
42DAP/41DAP | 1.26909 | 1 |
43DAP/42DAP | 1.00971 | 1 |
47DAP/43DAP | 1.15027 | 0.901 |
52DAP/47DAP | 1.21165 | 0.494 |
57DAP/52DAP | 1.08666 | 0.856 |
57DAP/7DAP | 1.13038 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93477 | 0.063 |
17DAP/reference | 0.74467 | 0.011 |
27DAP/reference | 0.70501 | 0.01 |
39DAP/reference | 0.86788 | 0.073 |
41DAP/reference | 0.81227 | 0.05 |
42DAP/reference | 0.79561 | 0.02 |
43DAP/reference | 0.80514 | 0.013 |
47DAP/reference | 0.85576 | 0.168 |
52DAP/reference | 0.82251 | 0.017 |
57DAP/reference | 0.88893 | 0.02 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00233 | 0.869 |
17DAP/reference | 0.94727 | 0.434 |
27DAP/reference | 0.85842 | 0.203 |
39DAP/reference | 0.80898 | 0.097 |
41DAP/reference | 0.85173 | 0.164 |
42DAP/reference | 0.81964 | 0.189 |
43DAP/reference | 0.99752 | 0.748 |
47DAP/reference | 1.09143 | 0.731 |
52DAP/reference | 1.01532 | 1 |
57DAP/reference | 0.92545 | 0.259 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81355 | 0.027 |
17DAP/reference | 0.93707 | 0.407 |
27DAP/reference | 0.77834 | 0.021 |
39DAP/reference | 0.83383 | 0.043 |
41DAP/reference | 0.80577 | 0.031 |
42DAP/reference | 0.86222 | 0.172 |
43DAP/reference | 0.83295 | 0.15 |
47DAP/reference | 0.94269 | 0.278 |
52DAP/reference | 0.90676 | 0.472 |
57DAP/reference | 0.66898 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08613 | 0.966 |
26DAP/20DAP | 1.29912 | 0.534 |
34DAP/26DAP | 1.10262 | 0.819 |
51DAP/34DAP | 0.90492 | 0.419 |
52DAP/51DAP | 0.86629 | 1 |
53DAP/52DAP | 1.24582 | 0.921 |
55DAP/53DAP | 1.36055 | 0.46 |
57DAP/55DAP | 1.16502 | 0.841 |
62DAP/57DAP | 0.97827 | 0.994 |
68DAP/62DAP | 0.81848 | 0.505 |
68DAP/14DAP | 0.75389 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.16098 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.65921 | |
Mature Green Tomato/Ripe Tomato | 0.58745 | 0.029 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 2.6896 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.95082 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.49688 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.95058 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.70327 | |
4-3-2/M82 | 0.63372 | 0.487 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.98131 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.6636 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.73616 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.28875 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.08384 | 1 |
IL12-4/WTpooled | 0.79766 | 0.71 |
IL1-4/WTpooled | 0.91622 | 0.834 |
WT/WTpooled | 0.91134 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.41303 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96745 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.01986 | 1 |
DC3000/delta hrp 24h | 0.90126 | |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.83634 | 0.879 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.92067 | |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.058 | 0.202 |
Var 12h NI row2-row1 | 0.93909 | 0.906 |
Var 36h I row2-row1 | 1.10081 | |
Var 36h NI row2-row1 | 1.89791 | 1 |
Var 60h I row2-row1 | 0.92281 | 0.582 |
Var 60h NI row2-row1 | 0.55327 | 0.408 |
Time course 0hI-0hNI | 0.84382 | 0.247 |
Time course 12hI-12hNI | 1.04182 | 0.82 |
Time course 36hI-36hNI | 1.11236 | 0.881 |
Time course 60hI-60hNI | 1.21451 | 0.187 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06167 | 0.384 |
transgenic ySAMdc/azygous control (breaker) | 1.16981 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.0146 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97293 | 0.471 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.03816 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.8848 | 1 |
Manapal/WT (red) | 1.20258 | 0.413 |
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