Expression of 1-1-2.3.3.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88537 | 0.339 |
27DAP/17DAP | 0.82927 | 0.597 |
39DAP/27DAP | 1.00827 | 0.899 |
41DAP/39DAP | 1.13041 | 0.78 |
42DAP/41DAP | 0.98107 | 1 |
43DAP/42DAP | 1.19686 | 0.861 |
47DAP/43DAP | 1.10159 | 0.689 |
52DAP/47DAP | 1.06985 | 1 |
57DAP/52DAP | 0.99408 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87217 | 0.205 |
17DAP/reference | 0.92423 | 0.342 |
27DAP/reference | 0.53091 | 0.182 |
39DAP/reference | 0.7372 | 0.02 |
41DAP/reference | 0.90723 | 0.341 |
42DAP/reference | 0.95599 | 0.337 |
43DAP/reference | 0.88077 | |
47DAP/reference | 0.85292 | 0.161 |
52DAP/reference | 0.85906 | 0.125 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97102 | 0.732 |
27DAP/17DAP | 1.00483 | 0.969 |
39DAP/27DAP | 0.96702 | 0.737 |
41DAP/39DAP | 0.977 | 0.98 |
42DAP/41DAP | 1.28474 | 0.719 |
43DAP/42DAP | 0.86431 | 0.085 |
47DAP/43DAP | 1.57971 | 0.884 |
52DAP/47DAP | 1.1914 | 0.549 |
57DAP/52DAP | 1.0689 | 0.699 |
57DAP/7DAP | 1.21222 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08988 | 0.481 |
17DAP/reference | 1.20014 | 0.627 |
27DAP/reference | 1.12788 | 0.301 |
39DAP/reference | 1.03721 | 1 |
41DAP/reference | 1.06691 | 0.891 |
42DAP/reference | 0.99362 | 0.713 |
43DAP/reference | 1.01372 | 0.727 |
47DAP/reference | 0.93871 | 0.504 |
52DAP/reference | 0.94732 | 0.398 |
57DAP/reference | 0.9885 | 0.53 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98237 | 0.736 |
17DAP/reference | 0.8878 | 0.253 |
27DAP/reference | 1.15758 | 0.131 |
39DAP/reference | 1.00868 | 0.621 |
41DAP/reference | 0.8368 | 0.06 |
42DAP/reference | 1.02374 | 1 |
43DAP/reference | 0.94951 | 0.486 |
47DAP/reference | 0.85094 | 0.058 |
52DAP/reference | 0.9438 | 0.38 |
57DAP/reference | 0.8607 | 0.063 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14071 | 0.311 |
17DAP/reference | 0.99599 | 0.763 |
27DAP/reference | 1.00506 | 0.805 |
39DAP/reference | 0.94694 | 0.36 |
41DAP/reference | 1.19564 | 0.249 |
42DAP/reference | 1.01171 | 1 |
43DAP/reference | 0.90309 | 0.348 |
47DAP/reference | 0.87544 | 0.097 |
52DAP/reference | 1.39126 | 0.609 |
57DAP/reference | 1.07974 | 0.444 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10274 | 1 |
26DAP/20DAP | 1.08578 | 0.818 |
34DAP/26DAP | 1.06435 | 1 |
51DAP/34DAP | 0.91335 | 0.727 |
52DAP/51DAP | 1.32876 | 0.167 |
53DAP/52DAP | 0.92183 | 0.732 |
55DAP/53DAP | 1.05932 | 0.982 |
57DAP/55DAP | 1.24918 | 0.666 |
62DAP/57DAP | 1.1504 | 0.902 |
68DAP/62DAP | 1.10721 | 0.939 |
68DAP/14DAP | 1.15267 | 0.453 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.92981 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.75168 | |
Mature Green Tomato/Ripe Tomato | 1.07759 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.41811 | 1 |
Mature Eggplant/Ripe Tomato | 1.69649 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99148 | 1 |
1-1-2/M82 | 0.96805 | 1 |
12-2/M82 | 1.01091 | 1 |
12-4/M82 | 1.02081 | 1 |
1-3/M82 | 1.05709 | 0.277 |
2-1-1/M82 | 0.89726 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.00827 | 1 |
3-2/M82 | 1.22048 | |
4-1-1/M82 | 0.92701 | 1 |
4-1/M82 | 0.93408 | |
4-3-2/M82 | 1.05649 | |
4-3/M82 | 1.10391 | 1 |
5-3/M82 | 0.99575 | 1 |
6-2/M82 | 0.98157 | 1 |
6-3/M82 | 0.93416 | 0.916 |
7-1/M82 | 1.05707 | 1 |
7-2/M82 | 0.91632 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.81493 | |
IL2-6/WTpooled | 0.70456 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.96955 | 1 |
IL12-4/WTpooled | 0.80498 | 0.581 |
IL1-4/WTpooled | 0.9144 | 0.834 |
WT/WTpooled | 0.98219 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88454 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0528 | 0.656 |
DC3000/delta hrp 6h | 1.10002 | 1 |
DC3000/delta hrp 12h | 1.05695 | 1 |
DC3000/delta hrp 24h | 1.05116 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.8383 | 0.033 |
DC3000 delta B/DC3000 delta AB | 0.76275 | 0.025 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88108 | 1 |
Exp 36h | 0.90413 | 0.82 |
Exp 60h | 0.87849 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94845 | 1 |
Var 0h | 0.45267 | 0.933 |
Var 12h I row2-row1 | 0.75151 | 0.338 |
Var 12h NI row2-row1 | 1.01638 | 1 |
Var 36h I row2-row1 | 0.90172 | 1 |
Var 36h NI row2-row1 | 1.27643 | 1 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.00592 | 1 |
Time course 0hI-0hNI | 0.9379 | 0.522 |
Time course 12hI-12hNI | 0.9549 | 0.612 |
Time course 36hI-36hNI | 0.81303 | 0.027 |
Time course 60hI-60hNI | 0.29763 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.19718 | 0.212 |
transgenic ySAMdc/azygous control (breaker) | 1.15393 | 1 |
transgenic ySAMdc/azygous control (red) | 0.98184 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97108 | 0.305 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04817 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.89568 | 0.093 |
Manapal/WT (break) | 1.55084 | 0.381 |
Manapal/WT (red) | 1.04453 | 1 |
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