Expression of 1-1-2.3.3.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.885370.339
27DAP/17DAP0.829270.597
39DAP/27DAP1.008270.899
41DAP/39DAP1.130410.78
42DAP/41DAP0.981071
43DAP/42DAP1.196860.861
47DAP/43DAP1.101590.689
52DAP/47DAP1.069851
57DAP/52DAP0.994080.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.872170.205
17DAP/reference0.924230.342
27DAP/reference0.530910.182
39DAP/reference0.73720.02
41DAP/reference0.907230.341
42DAP/reference0.955990.337
43DAP/reference0.88077
47DAP/reference0.852920.161
52DAP/reference0.859060.125
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.971020.732
27DAP/17DAP1.004830.969
39DAP/27DAP0.967020.737
41DAP/39DAP0.9770.98
42DAP/41DAP1.284740.719
43DAP/42DAP0.864310.085
47DAP/43DAP1.579710.884
52DAP/47DAP1.19140.549
57DAP/52DAP1.06890.699
57DAP/7DAP1.212221

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.089880.481
17DAP/reference1.200140.627
27DAP/reference1.127880.301
39DAP/reference1.037211
41DAP/reference1.066910.891
42DAP/reference0.993620.713
43DAP/reference1.013720.727
47DAP/reference0.938710.504
52DAP/reference0.947320.398
57DAP/reference0.98850.53

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.982370.736
17DAP/reference0.88780.253
27DAP/reference1.157580.131
39DAP/reference1.008680.621
41DAP/reference0.83680.06
42DAP/reference1.023741
43DAP/reference0.949510.486
47DAP/reference0.850940.058
52DAP/reference0.94380.38
57DAP/reference0.86070.063

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.140710.311
17DAP/reference0.995990.763
27DAP/reference1.005060.805
39DAP/reference0.946940.36
41DAP/reference1.195640.249
42DAP/reference1.011711
43DAP/reference0.903090.348
47DAP/reference0.875440.097
52DAP/reference1.391260.609
57DAP/reference1.079740.444

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.102741
26DAP/20DAP1.085780.818
34DAP/26DAP1.064351
51DAP/34DAP0.913350.727
52DAP/51DAP1.328760.167
53DAP/52DAP0.921830.732
55DAP/53DAP1.059320.982
57DAP/55DAP1.249180.666
62DAP/57DAP1.15040.902
68DAP/62DAP1.107210.939
68DAP/14DAP1.152670.453

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.929810.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.75168
Mature Green Tomato/Ripe Tomato1.07759
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.418111
Mature Eggplant/Ripe Tomato1.696490.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.991481
1-1-2/M820.968051
12-2/M821.010911
12-4/M821.020811
1-3/M821.057090.277
2-1-1/M820.897260.465
2-1/M82N/AN/A
2-6/M821.008271
3-2/M821.22048
4-1-1/M820.927011
4-1/M820.93408
4-3-2/M821.05649
4-3/M821.103911
5-3/M820.995751
6-2/M820.981571
6-3/M820.934160.916
7-1/M821.057071
7-2/M820.916320.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.81493
IL2-6/WTpooled0.704560.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.969551
IL12-4/WTpooled0.804980.581
IL1-4/WTpooled0.91440.834
WT/WTpooled0.982191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.884540.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.05280.656
DC3000/delta hrp 6h1.100021
DC3000/delta hrp 12h1.056951
DC3000/delta hrp 24h1.051160.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.83830.033
DC3000 delta B/DC3000 delta AB0.762750.025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.881081
Exp 36h0.904130.82
Exp 60h0.878490.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.948451
Var 0h0.452670.933
Var 12h I row2-row10.751510.338
Var 12h NI row2-row11.016381
Var 36h I row2-row10.901721
Var 36h NI row2-row11.276431
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.005921
Time course 0hI-0hNI0.93790.522
Time course 12hI-12hNI0.95490.612
Time course 36hI-36hNI0.813030.027
Time course 60hI-60hNI0.297630.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.197180.212
transgenic ySAMdc/azygous control (breaker)1.153931
transgenic ySAMdc/azygous control (red)0.981841

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.971080.305

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.048171

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.895680.093
Manapal/WT (break)1.550840.381
Manapal/WT (red)1.044531