Expression of 1-1-2.3.3.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92218 | 0.586 |
27DAP/17DAP | 1.12164 | 0.88 |
39DAP/27DAP | 1.37619 | 0.501 |
41DAP/39DAP | 0.72019 | 0.136 |
42DAP/41DAP | 1.29658 | 0.85 |
43DAP/42DAP | 1.16567 | 1 |
47DAP/43DAP | 0.9945 | 0.913 |
52DAP/47DAP | 0.85038 | 0.609 |
57DAP/52DAP | 1.30033 | 0.963 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77693 | 0.027 |
17DAP/reference | 0.81018 | 0.014 |
27DAP/reference | 1.05346 | 0.771 |
39DAP/reference | 0.86814 | 0.106 |
41DAP/reference | 0.78852 | 0.065 |
42DAP/reference | 0.88083 | 0.019 |
43DAP/reference | 0.98468 | 0.763 |
47DAP/reference | 1.04899 | 0.728 |
52DAP/reference | 1.11992 | 0.114 |
57DAP/reference | 1.18128 | 0.021 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14612 | 0.797 |
27DAP/17DAP | 1.05859 | 0.923 |
39DAP/27DAP | 1.24007 | 0.102 |
41DAP/39DAP | 1.23413 | 0.603 |
42DAP/41DAP | 1.00783 | 0.737 |
43DAP/42DAP | 0.91162 | 0.367 |
47DAP/43DAP | 0.96759 | 0.886 |
52DAP/47DAP | 1.0318 | 0.941 |
57DAP/52DAP | 1.17696 | 0.407 |
57DAP/7DAP | 1.05951 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.08394 | 0.028 |
17DAP/reference | 3.06532 | 0.007 |
27DAP/reference | 2.73239 | 0.007 |
39DAP/reference | 3.16147 | 0.005 |
41DAP/reference | 3.12921 | 0.013 |
42DAP/reference | 3.78058 | 0.007 |
43DAP/reference | 3.85097 | 0.006 |
47DAP/reference | 1.52606 | 0.235 |
52DAP/reference | 2.79673 | 0.009 |
57DAP/reference | 2.52893 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91708 | 0.362 |
17DAP/reference | 0.69919 | 0.005 |
27DAP/reference | 0.85733 | 0.16 |
39DAP/reference | 1.04529 | 0.705 |
41DAP/reference | 1.0265 | 1 |
42DAP/reference | 0.86978 | 0.067 |
43DAP/reference | 0.6549 | 0.027 |
47DAP/reference | 0.89604 | 0.012 |
52DAP/reference | 0.99916 | 0.761 |
57DAP/reference | 0.88622 | 0.125 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.21149 | 0.025 |
17DAP/reference | 0.80524 | 0.063 |
27DAP/reference | 2.86829 | 0.065 |
39DAP/reference | 2.80619 | 0.045 |
41DAP/reference | 2.49645 | 0.048 |
42DAP/reference | 2.69645 | 0.012 |
43DAP/reference | 2.57511 | 0.023 |
47DAP/reference | 0.98757 | 0.593 |
52DAP/reference | 2.09276 | 0.398 |
57DAP/reference | 1.28663 | 0.03 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10614 | 0.966 |
26DAP/20DAP | 0.73429 | 1 |
34DAP/26DAP | 1.03928 | 1 |
51DAP/34DAP | 1.06123 | 1 |
52DAP/51DAP | 1.0761 | 1 |
53DAP/52DAP | 1.17325 | 0.502 |
55DAP/53DAP | 1.28216 | 0.275 |
57DAP/55DAP | 1.10557 | 1 |
62DAP/57DAP | 1.2566 | 0.902 |
68DAP/62DAP | 1.57992 | 0.04 |
68DAP/14DAP | 1.80717 | 0.031 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.79727 | 0.211 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.94232 | 0.692 |
Mature Green Tomato/Ripe Tomato | 0.89149 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.17476 | 0.15 |
Ripe Pepper/Ripe Tomato | 1.00615 | 1 |
Mature Eggplant/Ripe Tomato | 1.47147 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.85936 | 0.883 |
1-1-2/M82 | 0.99865 | 1 |
12-2/M82 | 0.95795 | 0.955 |
12-4/M82 | 0.80438 | 0.358 |
1-3/M82 | 1.84113 | 0.248 |
2-1-1/M82 | 0.92133 | 1 |
2-1/M82 | 0.8527 | |
2-6/M82 | 0.76065 | 0.501 |
3-2/M82 | 1.56899 | |
4-1-1/M82 | 0.77539 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.12672 | 1 |
5-3/M82 | 1.22401 | |
6-2/M82 | 1.03106 | 1 |
6-3/M82 | 1.13704 | 1 |
7-1/M82 | 1.03699 | |
7-2/M82 | 1.23561 | 1 |
9-3-2/M82 | 1.01785 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.85843 | 0.247 |
IL2-6/WTpooled | 1.38877 | 1 |
IL7-5/WTpooled | 0.95704 | 1 |
IL7-3/WTpooled | 1.08817 | 1 |
IL12-4/WTpooled | 0.98046 | 1 |
IL1-4/WTpooled | 1.0728 | 1 |
WT/WTpooled | 1.02967 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82133 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99132 | 1 |
DC3000/delta hrp 6h | 1.15701 | 1 |
DC3000/delta hrp 12h | 0.97188 | 1 |
DC3000/delta hrp 24h | 0.89878 | 0.285 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09242 | 0.408 |
DC3000 delta B/DC3000 delta AB | 0.9025 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05457 | 1 |
Exp 36h | 0.92911 | 0.749 |
Exp 60h | 0.91696 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.87483 | |
Var 0h | 0.938 | 1 |
Var 12h I row2-row1 | 0.78058 | 0.338 |
Var 12h NI row2-row1 | 1.10288 | 1 |
Var 36h I row2-row1 | 1.21812 | 0.339 |
Var 36h NI row2-row1 | 0.72408 | 0.743 |
Var 60h I row2-row1 | 1.06895 | |
Var 60h NI row2-row1 | 0.84642 | 0.756 |
Time course 0hI-0hNI | 0.99211 | 1 |
Time course 12hI-12hNI | 1.04422 | 0.777 |
Time course 36hI-36hNI | 1.13859 | 0.19 |
Time course 60hI-60hNI | 1.29111 | 0.08 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00162 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.69319 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.92069 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.16795 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75342 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.80367 | 0.172 |
Manapal/WT (break) | 0.88143 | 0.333 |
Manapal/WT (red) | 1.06965 | 1 |
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