Expression of 1-1-2.3.3.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.922180.586
27DAP/17DAP1.121640.88
39DAP/27DAP1.376190.501
41DAP/39DAP0.720190.136
42DAP/41DAP1.296580.85
43DAP/42DAP1.165671
47DAP/43DAP0.99450.913
52DAP/47DAP0.850380.609
57DAP/52DAP1.300330.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.776930.027
17DAP/reference0.810180.014
27DAP/reference1.053460.771
39DAP/reference0.868140.106
41DAP/reference0.788520.065
42DAP/reference0.880830.019
43DAP/reference0.984680.763
47DAP/reference1.048990.728
52DAP/reference1.119920.114
57DAP/reference1.181280.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.146120.797
27DAP/17DAP1.058590.923
39DAP/27DAP1.240070.102
41DAP/39DAP1.234130.603
42DAP/41DAP1.007830.737
43DAP/42DAP0.911620.367
47DAP/43DAP0.967590.886
52DAP/47DAP1.03180.941
57DAP/52DAP1.176960.407
57DAP/7DAP1.059511

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.083940.028
17DAP/reference3.065320.007
27DAP/reference2.732390.007
39DAP/reference3.161470.005
41DAP/reference3.129210.013
42DAP/reference3.780580.007
43DAP/reference3.850970.006
47DAP/reference1.526060.235
52DAP/reference2.796730.009
57DAP/reference2.528930.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.917080.362
17DAP/reference0.699190.005
27DAP/reference0.857330.16
39DAP/reference1.045290.705
41DAP/reference1.02651
42DAP/reference0.869780.067
43DAP/reference0.65490.027
47DAP/reference0.896040.012
52DAP/reference0.999160.761
57DAP/reference0.886220.125

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.211490.025
17DAP/reference0.805240.063
27DAP/reference2.868290.065
39DAP/reference2.806190.045
41DAP/reference2.496450.048
42DAP/reference2.696450.012
43DAP/reference2.575110.023
47DAP/reference0.987570.593
52DAP/reference2.092760.398
57DAP/reference1.286630.03

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.106140.966
26DAP/20DAP0.734291
34DAP/26DAP1.039281
51DAP/34DAP1.061231
52DAP/51DAP1.07611
53DAP/52DAP1.173250.502
55DAP/53DAP1.282160.275
57DAP/55DAP1.105571
62DAP/57DAP1.25660.902
68DAP/62DAP1.579920.04
68DAP/14DAP1.807170.031

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.797270.211

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.942320.692
Mature Green Tomato/Ripe Tomato0.891490.411
Immature Eggplant/Mature Eggplant1.174760.15
Ripe Pepper/Ripe Tomato1.006151
Mature Eggplant/Ripe Tomato1.471470.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.859360.883
1-1-2/M820.998651
12-2/M820.957950.955
12-4/M820.804380.358
1-3/M821.841130.248
2-1-1/M820.921331
2-1/M820.8527
2-6/M820.760650.501
3-2/M821.56899
4-1-1/M820.775391
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.126721
5-3/M821.22401
6-2/M821.031061
6-3/M821.137041
7-1/M821.03699
7-2/M821.235611
9-3-2/M821.01785

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.858430.247
IL2-6/WTpooled1.388771
IL7-5/WTpooled0.957041
IL7-3/WTpooled1.088171
IL12-4/WTpooled0.980461
IL1-4/WTpooled1.07281
WT/WTpooled1.029671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.821330.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.991321
DC3000/delta hrp 6h1.157011
DC3000/delta hrp 12h0.971881
DC3000/delta hrp 24h0.898780.285

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.092420.408
DC3000 delta B/DC3000 delta AB0.9025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.054571
Exp 36h0.929110.749
Exp 60h0.916960.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.87483
Var 0h0.9381
Var 12h I row2-row10.780580.338
Var 12h NI row2-row11.102881
Var 36h I row2-row11.218120.339
Var 36h NI row2-row10.724080.743
Var 60h I row2-row11.06895
Var 60h NI row2-row10.846420.756
Time course 0hI-0hNI0.992111
Time course 12hI-12hNI1.044220.777
Time course 36hI-36hNI1.138590.19
Time course 60hI-60hNI1.291110.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.001621
transgenic ySAMdc/azygous control (breaker)0.693190.142
transgenic ySAMdc/azygous control (red)0.920691

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.167950.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.753420.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.803670.172
Manapal/WT (break)0.881430.333
Manapal/WT (red)1.069651