Expression of 1-1-2.3.3.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.939120.617
27DAP/17DAP0.78190.451
39DAP/27DAP1.315460.236
41DAP/39DAP0.723320.158
42DAP/41DAP1.132830.941
43DAP/42DAP1.030891
47DAP/43DAP0.95620.768
52DAP/47DAP1.416040.371
57DAP/52DAP1.502150.902

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.902770.109
17DAP/reference0.84520.057
27DAP/reference1.015391
39DAP/reference0.865620.136
41DAP/reference0.77520.012
42DAP/reference1.039190.544
43DAP/reference1.051920.705
47DAP/reference1.113420.062
52DAP/reference1.21580.092
57DAP/reference1.228160.041

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.011471
27DAP/17DAP0.957460.854
39DAP/27DAP0.916790.469
41DAP/39DAP1.206260.427
42DAP/41DAP0.996820.887
43DAP/42DAP0.94030.597
47DAP/43DAP1.048380.873
52DAP/47DAP0.90280.512
57DAP/52DAP1.113150.417
57DAP/7DAP0.931841

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.359050.037
17DAP/reference1.671440.014
27DAP/reference1.311290.16
39DAP/reference1.275080.053
41DAP/reference1.256450.215
42DAP/reference1.355710.059
43DAP/reference1.181940.066
47DAP/reference1.180750.13
52DAP/reference1.224770.041
57DAP/reference1.394150.019

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.879620.286
17DAP/reference0.875530.153
27DAP/reference1.120230.607
39DAP/reference1.019291
41DAP/reference1.128620.043
42DAP/reference1.025930.843
43DAP/reference0.721160.03
47DAP/reference0.992140.643
52DAP/reference0.869980.02
57DAP/reference0.715460.016

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.320960.202
17DAP/reference0.892590.348
27DAP/reference1.07020.721
39DAP/reference1.235740.235
41DAP/reference0.966190.56
42DAP/reference1.152520.194
43DAP/reference1.412150.052
47DAP/reference1.136550.424
52DAP/reference1.275370.058
57DAP/reference1.670570.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.077510.966
26DAP/20DAP1.469940.238
34DAP/26DAP1.000150.988
51DAP/34DAP1.188180.159
52DAP/51DAP0.839721
53DAP/52DAP1.070330.552
55DAP/53DAP0.728680.025
57DAP/55DAP1.228320.906
62DAP/57DAP1.120620.868
68DAP/62DAP1.442050.124
68DAP/14DAP1.867680.08

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.028871

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.988860.847
Mature Green Tomato/Ripe Tomato1.406490.299
Immature Eggplant/Mature Eggplant0.979590.912
Ripe Pepper/Ripe Tomato1.769121
Mature Eggplant/Ripe Tomato1.009781

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.94568
1-1-2/M821.164981
12-2/M820.68702
12-4/M821.346391
1-3/M821.91271
2-1-1/M822.019080.457
2-1/M820.8065
2-6/M820.927811
3-2/M82N/AN/A
4-1-1/M821.65199
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.232411
5-3/M821.329461
6-2/M822.4396
6-3/M821.002621
7-1/M82N/AN/A
7-2/M821.201141
9-3-2/M820.83491

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.058290.365
IL2-6/WTpooled2.173990.361
IL7-5/WTpooled0.742221
IL7-3/WTpooled1.110591
IL12-4/WTpooled1.660950.525
IL1-4/WTpooled1.498551
WT/WTpooled0.957371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.959931

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.985141
DC3000/delta hrp 6h0.949830.95
DC3000/delta hrp 12h0.829731
DC3000/delta hrp 24h1.04750.779

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.140040.145
DC3000 delta B/DC3000 delta AB1.174240.209

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.012611
Exp 36h1.291910.693
Exp 60h1.148520.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988481
Var 0h1.872760.98
Var 12h I row2-row11.163920.692
Var 12h NI row2-row11.135651
Var 36h I row2-row11.003631
Var 36h NI row2-row14.141851
Var 60h I row2-row10.890890.285
Var 60h NI row2-row10.946010.932
Time course 0hI-0hNI0.896330.297
Time course 12hI-12hNI1.016220.867
Time course 36hI-36hNI1.20760.28
Time course 60hI-60hNI1.056970.426

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.207660.289
transgenic ySAMdc/azygous control (breaker)0.627210.15
transgenic ySAMdc/azygous control (red)0.724821

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.294540.071

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.857350.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.775510.172
Manapal/WT (break)1.102850.381
Manapal/WT (red)1.363370.164